Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EMG1 Gene 0 124.12 80.72 106.97 126.02 160.01 167.73 93.63 54.43 41.38 137.89 302.56 128.85 86.72 441.59 463.46 637.44 314.02 157.18 255.13 124.78 124.81 175.05 229.56 2 451846 Transcript 0 0.30 2.03 1.58 1.27 3.63 1.18 0.85 2.72 0.00 1.39 0.00 0.00 0.00 0.00 1.04 2.55 0.00 0.00 0.00 2.13 2.20 1.79 0.42 3 261406 Transcript 0 65.97 57.68 66.99 64.15 76.26 46.38 43.12 26.44 28.68 101.61 234.03 163.58 97.88 373.50 452.77 279.76 214.95 39.22 60.97 73.03 79.96 104.30 54.28 4 439543 Transcript 0 0.07 3.10 4.13 0.10 0.00 3.70 0.63 2.08 1.46 0.05 3.83 6.27 10.26 4.81 9.01 4.60 0.10 3.95 0.00 4.15 0.09 1.04 2.13 5 ER1a ExonRegion 1 249.30 105.47 67.68 103.82 306.21 364.24 175.12 46.02 33.99 106.30 266.99 35.27 37.86 331.40 426.39 1116.53 272.39 259.72 482.08 158.83 119.73 170.20 468.84 6 E1a_E2a KnownJunction 0 0.00 0.00 29.74 25.94 0.00 0.00 0.00 2.51 15.08 31.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 1 18.90 12.44 49.04 42.15 12.17 7.55 6.43 18.48 18.03 61.39 226.20 29.07 18.09 153.40 122.41 170.76 266.90 21.07 78.19 45.95 135.11 48.27 58.66 8 E2a_E3a KnownJunction 1 47.42 29.21 128.41 118.77 33.79 19.42 19.12 50.19 44.76 170.25 538.29 61.52 47.07 327.33 284.57 414.16 692.94 64.13 196.62 138.89 307.03 127.79 139.48 9 ER3a ExonRegion 0 66.69 59.59 156.57 190.86 79.56 77.63 46.38 71.82 62.00 191.92 440.81 96.05 113.25 650.81 781.49 1483.24 525.85 295.22 650.25 204.48 202.05 324.03 616.06 10 E3a_E4a KnownJunction 1 102.54 116.69 187.43 260.81 184.89 82.51 64.21 91.27 78.73 192.60 347.40 129.34 56.81 411.15 395.58 1282.65 255.45 542.62 459.31 181.78 105.08 283.14 611.11 11 ER4a ExonRegion 0 75.93 92.61 173.17 197.43 374.57 422.95 203.22 86.78 59.74 187.38 392.04 189.00 106.48 527.13 448.55 574.14 414.59 200.05 232.20 134.09 170.48 207.63 190.72 12 E4a_E5a KnownJunction 0 258.19 193.45 202.18 219.95 55.69 88.47 95.08 94.51 61.20 198.81 383.78 180.06 152.26 493.73 464.06 441.17 393.64 157.11 148.62 131.73 117.87 275.80 132.23 13 ER4b ExonRegion 0 0.30 2.03 1.58 1.27 3.63 1.18 0.85 2.72 0.00 1.39 0.00 0.00 0.00 0.00 1.04 2.55 0.00 0.00 0.00 2.13 2.20 1.79 0.42 14 ER5a ExonRegion 0 220.84 157.96 152.71 169.27 78.73 81.62 60.63 62.96 47.71 186.60 333.08 194.53 129.02 586.72 588.86 487.43 338.48 159.66 174.66 118.54 147.39 251.36 122.19 15 E5_Da NovelBoundary 0 34.52 21.44 23.18 9.29 32.00 23.17 26.10 18.81 8.59 33.07 5.21 19.06 0.00 17.78 11.50 20.25 22.63 13.22 32.28 23.91 9.08 19.78 15.71 16 E5a_E6a KnownJunction 0 207.07 143.40 134.68 159.62 127.93 51.33 73.44 50.97 43.63 203.86 335.19 209.02 128.08 613.28 526.36 489.19 343.71 126.02 137.70 139.66 156.61 201.52 93.30 17 E5a_E7a NovelJunction 0 0.00 3.35 10.14 17.18 3.57 7.84 0.00 4.85 3.01 6.58 14.16 12.60 0.00 9.71 14.96 4.36 4.11 8.17 7.91 6.26 10.19 3.00 3.67 18 E6_Aa NovelBoundary 0 17.19 6.25 6.12 14.12 11.54 12.61 23.76 20.04 5.67 14.40 14.53 0.00 20.45 14.36 8.90 7.18 8.79 7.50 18.92 5.24 10.93 28.35 13.06 19 ER6a ExonRegion 0 195.57 99.27 123.13 132.87 114.83 76.32 72.14 70.26 46.20 177.62 337.39 203.05 125.16 566.36 521.90 442.59 327.73 124.83 151.37 137.25 121.78 176.03 118.62 20 E6_Da NovelBoundary 0 16.74 38.81 15.08 35.89 31.66 25.84 20.62 12.77 4.80 26.08 25.64 12.45 13.64 12.95 28.56 16.41 16.27 14.34 7.34 11.25 34.53 35.27 11.44 21 E6a_E7a KnownJunction 0 69.35 54.40 77.53 57.47 102.97 60.53 46.99 28.63 28.30 115.78 234.43 173.01 113.30 376.13 439.83 267.11 228.42 33.08 54.50 58.23 99.59 102.20 45.33 22 E6a_E8a KnownJunction 0 0.00 2.43 7.16 0.00 0.00 4.66 0.00 2.55 1.79 0.00 0.00 0.00 0.00 2.71 0.00 3.25 0.00 5.10 0.00 6.39 0.00 0.00 4.27 23 I6 Intron 0 25.20 36.64 18.51 43.46 33.58 14.46 21.30 10.36 4.15 18.70 18.97 17.91 11.98 20.50 32.29 31.56 26.55 18.62 19.47 17.80 14.88 26.82 13.72 24 I6_AR1 ActiveIntronRegion 0 25.35 36.88 18.63 43.72 33.79 14.55 21.44 10.43 4.17 18.82 19.09 18.02 12.05 20.63 32.48 31.75 26.71 18.74 19.60 17.91 14.98 26.99 13.81 25 E7_Aa NovelBoundary 0 34.45 46.97 30.99 80.54 33.53 14.31 35.02 20.58 14.35 22.86 29.38 32.41 0.00 28.78 33.13 35.29 48.53 11.36 17.51 48.26 11.18 19.29 7.17 26 ER7a ExonRegion 0 62.60 60.95 56.46 70.82 49.55 32.22 39.24 24.26 29.07 87.45 233.63 154.15 82.45 370.87 465.70 292.42 201.47 45.35 67.45 87.83 60.33 106.41 63.24 27 E7_Da NovelBoundary 0 108.09 112.28 84.00 114.64 59.59 58.03 50.12 74.14 29.72 125.85 279.18 116.74 91.71 411.44 466.16 332.73 306.69 60.07 167.53 92.68 111.69 243.46 93.98 28 I7 Intron 0 32.24 40.10 41.23 53.31 41.86 25.20 38.53 25.57 17.52 54.16 77.29 98.68 55.53 110.61 130.16 83.67 87.10 42.22 45.92 58.74 29.97 43.35 33.95 29 I7_AR1 ActiveIntronRegion 0 32.42 40.32 41.44 53.59 42.08 25.34 38.74 25.71 17.61 54.45 77.69 99.19 55.82 111.20 130.84 84.12 87.55 42.45 46.14 59.04 30.13 43.58 34.11 30 Ix Intron 0 17.40 19.29 28.86 32.08 21.43 18.16 32.09 17.36 9.31 30.61 27.31 32.90 19.94 38.86 37.08 41.97 46.61 31.96 44.29 43.94 18.58 26.78 16.09 31 Ix_AR1 ActiveIntronRegion 0 17.53 19.44 29.09 32.35 21.61 18.32 32.35 17.51 9.39 30.86 27.54 33.17 20.11 39.18 37.39 42.32 47.00 32.22 44.65 44.30 18.73 27.00 16.22 32 Ix Intron 0 6.23 5.98 11.64 12.95 11.81 8.99 12.34 3.79 4.51 12.57 17.06 44.21 22.46 30.41 22.51 21.86 30.76 22.99 24.99 24.00 16.21 4.09 12.96 33 Ix_AR1 ActiveIntronRegion 0 6.35 6.10 11.87 13.20 12.01 9.17 12.58 3.86 4.60 12.81 17.40 45.08 22.90 31.00 22.93 22.29 31.33 23.42 25.48 24.45 16.53 4.17 13.21 34 Ix Intron 0 34.88 20.66 22.52 25.26 28.56 26.80 26.76 28.56 18.12 43.58 37.46 21.67 22.08 45.85 62.01 48.99 43.46 40.38 33.68 44.55 28.77 18.14 18.87 35 Ix_AR1 ActiveIntronRegion 0 35.01 20.74 22.61 25.36 28.67 26.91 26.87 28.67 18.19 43.76 37.61 21.76 22.17 46.04 62.26 49.19 43.62 40.54 33.80 44.73 28.89 18.21 18.95 36 Ix Intron 0 15.91 20.74 17.65 7.63 12.93 8.86 14.22 12.44 1.98 16.52 16.60 19.96 8.29 34.47 41.78 30.32 31.90 22.19 39.33 26.27 28.39 13.42 12.61 37 Ix_AR1 ActiveIntronRegion 0 16.23 21.14 18.01 7.78 13.15 9.05 14.52 12.71 2.02 16.87 16.96 20.39 8.47 35.19 42.65 30.97 32.58 22.65 40.18 26.84 28.96 13.71 12.88 38 Ix Intron 0 56.67 52.19 59.26 64.99 44.03 36.64 35.79 41.71 24.88 62.95 37.11 45.97 31.23 54.02 59.35 65.21 54.32 57.95 50.55 52.80 32.52 38.37 32.41 39 Ix_AR1 ActiveIntronRegion 0 56.81 52.32 59.42 65.16 44.14 36.74 35.88 41.82 24.94 63.11 37.20 46.08 31.31 54.15 59.50 65.37 54.46 58.10 50.68 52.93 32.60 38.47 32.49 40 Ix Intron 0 46.66 36.00 33.53 44.10 28.17 14.48 26.84 28.65 20.95 33.63 16.79 18.67 21.31 21.94 39.84 37.76 33.47 29.99 29.14 30.10 13.05 17.03 21.06 41 Ix_AR1 ActiveIntronRegion 0 64.23 34.02 45.72 52.02 35.51 21.16 32.38 37.73 31.01 41.02 24.31 26.54 29.06 27.69 50.88 52.14 42.67 37.95 36.03 39.77 19.32 21.88 30.15 42 Ix_AR2 ActiveIntronRegion 0 26.15 43.15 19.38 37.55 20.47 6.24 21.62 18.59 8.44 26.62 7.60 9.26 12.39 16.01 28.29 20.95 23.66 21.65 22.49 19.20 5.32 11.84 10.12 43 Ix Intron 0 19.12 16.38 21.48 31.69 21.24 12.05 15.58 17.87 15.72 24.32 14.61 16.57 20.55 16.62 29.55 21.72 25.79 20.59 17.37 18.99 13.64 12.13 12.37 44 Ix_AR1 ActiveIntronRegion 0 19.21 16.46 21.59 31.85 21.35 12.11 15.66 17.96 15.80 24.43 14.68 16.65 20.65 16.71 29.69 21.83 25.91 20.69 17.45 19.08 13.70 12.19 12.43 45 Ix_AR2 ActiveIntronRegion 0 11.38 21.61 18.38 38.84 10.37 1.83 9.60 5.19 4.79 22.94 10.87 5.41 9.38 13.20 26.47 19.32 11.55 24.94 19.11 20.21 5.51 4.95 11.75 46 Ix Intron 0 20.28 17.32 13.42 33.08 15.67 9.96 18.18 11.52 8.62 19.47 5.35 14.26 18.74 13.79 14.25 16.14 12.30 14.38 13.57 17.90 7.74 8.87 12.82 47 Ix_AR2 ActiveIntronRegion 0 24.64 20.56 16.78 41.99 18.03 12.64 23.32 13.41 10.71 25.13 6.51 18.76 23.96 18.44 17.09 20.94 14.66 19.42 18.05 22.81 9.79 9.89 16.64 48 Ix Intron 0 18.64 18.21 13.10 32.25 17.87 7.80 20.96 11.98 5.74 14.37 2.87 11.19 13.81 3.90 8.98 10.29 6.20 8.87 7.72 11.58 2.83 7.42 7.70 49 Ix_SR1 SilentIntronRegion 0 18.65 18.23 13.11 32.28 17.89 7.81 20.98 11.99 5.74 14.39 2.87 11.20 13.82 3.91 8.99 10.30 6.21 8.88 7.73 11.59 2.84 7.43 7.71 50 E8_Aa NovelBoundary 0 23.56 17.89 33.80 79.84 30.98 10.62 29.19 20.95 16.26 21.49 0.00 6.15 19.48 5.24 14.09 19.99 9.26 11.86 9.22 22.56 8.65 5.88 12.12 51 ER8a ExonRegion 0 0.13 3.77 1.10 0.20 0.00 2.75 1.27 1.62 1.13 0.10 7.65 12.54 20.52 6.90 18.01 5.94 0.21 2.81 0.00 1.91 0.18 2.08 0.00