Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF384 Gene 0 109.47 115.66 122.20 199.70 111.50 153.94 87.41 127.69 122.77 240.39 285.03 155.16 171.62 224.81 191.38 211.73 191.89 246.96 170.19 145.17 144.31 158.23 143.70 2 396801 Transcript 0 65.27 48.91 32.47 80.63 58.98 104.14 51.88 81.10 99.80 132.54 164.59 68.97 99.72 89.56 63.58 85.66 94.59 235.40 127.70 127.31 123.56 106.67 89.74 3 436774 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 417772 Transcript 0 16.97 25.58 19.57 59.01 31.07 39.32 14.01 46.08 53.83 89.46 92.82 47.32 61.44 51.37 42.49 43.46 37.54 121.62 66.33 85.09 66.94 66.23 39.32 5 355772 Transcript 0 3.78 0.00 1.60 5.29 7.22 0.00 7.73 2.55 0.00 2.77 5.00 11.55 0.00 11.65 4.45 0.00 4.68 8.50 15.81 3.26 5.93 8.33 0.00 6 396799 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 319770 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 361959 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 396795 Transcript 1 26.13 57.88 43.32 62.95 36.88 82.86 45.31 66.44 71.37 142.67 81.35 30.75 22.02 70.78 46.06 71.57 53.69 118.61 93.13 68.10 66.43 81.42 72.20 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 1 5.61 12.20 3.12 6.13 18.93 44.16 19.17 8.81 10.69 10.11 51.06 22.16 33.87 35.96 26.30 88.79 31.84 53.97 29.66 9.50 17.22 16.68 77.70 12 E1a_E3b KnownJunction 1 7.56 14.80 12.71 24.94 27.42 18.34 9.36 20.70 29.69 32.72 56.80 43.36 78.24 36.97 38.45 79.04 25.15 118.93 41.98 20.52 19.83 36.92 52.75 13 ER2a ExonRegion 0 8.56 7.53 2.77 2.27 7.18 12.15 5.67 4.07 4.18 6.63 32.11 8.23 6.80 23.01 17.86 19.92 23.01 22.92 20.80 10.44 12.66 15.71 15.71 14 E2a_E3b KnownJunction 0 6.00 2.63 7.54 15.85 0.00 10.33 6.01 9.65 12.59 19.82 40.27 18.91 13.15 58.92 37.33 46.83 19.54 32.67 51.67 25.31 30.89 30.98 31.76 15 I2 Intron 1 9.86 15.86 10.84 22.47 14.64 31.82 15.72 17.69 22.29 66.47 61.44 4.09 4.63 33.65 28.22 37.73 38.83 67.69 55.64 49.55 50.81 26.20 46.85 16 I2_AR1 ActiveIntronRegion 1 9.90 15.94 10.89 22.57 14.71 31.95 15.80 17.78 22.39 66.77 61.72 4.11 4.65 33.80 28.35 37.89 39.01 67.99 55.90 49.78 51.04 26.32 47.06 17 E3_Aa NovelBoundary 0 3.78 22.23 33.32 58.70 36.50 18.97 25.97 43.74 55.44 138.69 77.97 10.95 0.00 40.97 32.51 43.07 53.95 134.31 76.43 83.16 46.33 84.62 108.41 18 ER3a ExonRegion 0 26.13 57.88 43.32 62.95 36.88 82.86 45.31 66.44 71.37 142.67 81.35 30.75 22.02 70.78 46.06 71.57 53.69 118.61 93.13 68.10 66.43 81.42 72.20 19 E3_Ab KnownBoundary 1 25.71 81.89 61.53 111.47 76.57 114.88 69.20 82.85 102.23 209.68 111.66 66.77 56.49 140.56 48.21 150.22 35.06 152.84 145.89 84.18 46.27 152.29 151.26 20 ER3b ExonRegion 0 58.76 62.21 93.27 151.49 77.32 122.93 71.36 112.76 164.56 309.35 426.38 143.83 121.86 230.57 173.39 309.25 232.74 301.87 225.51 173.46 185.63 222.90 180.68 21 E3a_E4a KnownJunction 0 40.23 55.38 111.17 209.80 58.74 82.74 112.31 138.58 185.82 382.94 506.39 242.93 146.91 201.84 218.93 353.24 359.51 318.78 268.24 206.77 236.42 255.16 209.74 22 ER4a ExonRegion 0 31.42 80.25 111.70 205.22 101.98 133.27 88.30 144.48 177.79 352.81 472.99 195.92 128.15 304.69 202.84 312.58 310.56 354.56 252.18 186.27 207.40 246.32 225.46 23 E4a_E5a KnownJunction 0 26.67 87.81 153.25 247.62 132.17 180.07 86.47 161.34 198.87 358.10 483.07 224.32 159.08 346.58 243.90 195.08 286.58 337.43 178.36 166.70 228.76 173.90 130.61 24 ER5a ExonRegion 0 69.21 90.92 153.05 215.91 84.70 167.55 69.59 176.06 203.88 374.29 505.75 264.88 186.83 365.56 236.29 367.14 351.10 447.95 280.39 208.95 234.96 242.34 223.42 25 E5_Da NovelBoundary 0 20.23 8.35 7.30 41.69 24.11 16.07 28.44 25.10 25.90 40.27 37.38 30.91 22.08 85.88 24.85 38.62 52.55 52.52 62.50 42.25 25.27 43.97 25.61 26 E5a_E6a KnownJunction 1 66.60 43.81 88.55 115.34 65.62 110.50 21.46 103.71 121.90 171.41 347.46 204.52 180.02 256.11 87.27 174.66 207.20 185.75 152.76 143.43 153.33 130.55 147.59 27 E5a_E7a KnownJunction 0 14.67 37.82 28.18 36.49 0.00 7.61 18.50 33.97 28.36 98.31 65.33 81.78 28.73 122.67 62.18 77.50 67.13 68.90 84.52 32.98 18.78 58.05 36.45 28 E5a_E7b KnownJunction 0 3.78 0.00 1.60 5.29 7.22 0.00 7.73 2.55 0.00 2.77 5.00 11.55 0.00 11.65 4.45 0.00 4.68 8.50 15.81 3.26 5.93 8.33 0.00 29 I5 Intron 0 14.39 9.51 10.86 15.54 17.06 21.04 10.13 8.76 7.82 15.25 28.75 26.41 16.88 33.25 17.19 21.47 30.86 17.98 36.55 21.70 13.11 9.74 12.48 30 I5_AR1 ActiveIntronRegion 0 17.27 11.41 13.04 18.64 20.44 25.23 12.15 10.49 9.39 18.30 34.50 31.69 20.21 39.90 20.63 25.77 37.00 21.54 43.86 26.04 15.71 11.69 14.95 31 E6_Aa NovelBoundary 0 54.75 21.51 28.65 54.87 40.41 33.79 37.32 29.57 37.44 41.13 99.29 75.77 59.90 69.87 64.28 73.83 63.77 49.95 56.94 27.68 43.86 19.90 55.74 32 ER6a ExonRegion 0 83.21 36.52 76.28 117.69 49.50 97.99 44.85 92.87 134.86 195.14 312.97 172.73 192.39 278.57 133.52 155.79 250.32 232.43 114.21 142.46 174.92 117.85 127.87 33 E6_Da NovelBoundary 0 42.67 8.62 11.21 37.89 51.02 31.80 41.91 12.77 21.01 52.00 54.80 49.97 61.68 74.17 23.61 56.74 29.73 45.64 29.18 56.12 31.32 32.82 33.97 34 E6a_E7a KnownJunction 0 106.76 39.53 78.38 118.37 72.07 112.32 61.70 97.26 137.59 229.59 296.55 180.81 161.84 254.52 153.04 171.66 267.13 249.43 121.70 153.59 193.73 136.24 132.74 35 I6 Intron 1 88.17 13.35 5.07 17.95 49.99 45.37 40.11 19.51 14.41 44.01 79.55 34.91 43.26 63.25 47.74 82.54 67.50 42.00 81.26 42.44 35.05 38.40 51.16 36 I6_SR1 SilentIntronRegion 0 27.68 7.94 4.16 15.15 28.78 30.83 25.92 17.93 16.52 39.91 39.76 40.58 25.44 57.68 27.12 59.72 49.54 39.71 49.54 28.80 19.11 36.85 37.28 37 I6_AR1 ActiveIntronRegion 1 179.56 21.72 6.57 22.63 82.75 68.24 62.21 22.47 11.85 51.45 140.43 27.85 70.76 73.67 79.55 118.77 96.13 46.83 130.48 63.78 59.58 42.00 73.27 38 E7_Aa NovelBoundary 1 77.12 30.19 29.66 71.15 44.74 20.27 35.86 50.07 30.99 114.97 47.75 37.21 66.88 57.04 42.90 23.50 74.89 91.28 39.25 41.42 39.04 33.68 48.91 39 ER7a ExonRegion 0 118.24 95.10 155.33 212.22 106.62 200.40 98.11 190.03 208.26 392.26 553.50 319.24 216.81 422.74 229.91 385.67 392.36 473.79 284.87 240.75 264.13 208.37 239.61 40 E7_Ab KnownBoundary 0 112.76 120.77 166.29 295.13 114.35 167.69 77.55 198.96 198.00 385.76 504.97 240.38 247.22 405.79 225.11 363.58 384.48 394.80 403.78 265.26 233.15 180.21 231.93 41 ER7b ExonRegion 0 94.49 100.90 132.46 210.44 139.21 224.77 127.36 171.32 221.84 394.38 552.46 310.54 412.68 439.41 331.04 387.95 348.72 399.39 277.83 285.34 257.68 245.90 250.99 42 E7a_E8a KnownJunction 0 15.71 35.98 13.01 62.50 31.41 79.33 22.13 44.81 55.82 92.70 109.40 48.92 81.00 45.85 43.64 39.39 44.79 98.16 52.71 111.98 48.31 62.64 41.15 43 E7a_E9a KnownJunction 0 88.09 89.59 114.99 203.27 88.20 138.84 91.81 151.85 180.35 367.34 551.77 325.46 550.61 482.49 427.72 465.60 297.62 531.85 304.01 229.91 166.55 339.42 327.54 44 ER8a ExonRegion 0 18.59 27.88 21.96 53.30 28.34 21.89 13.99 46.97 51.69 86.09 114.10 48.93 64.05 60.16 41.18 45.80 59.81 133.71 78.50 87.69 83.01 72.00 41.05 45 E8a_E9a KnownJunction 1 16.60 12.89 23.74 61.23 33.45 16.75 5.92 46.45 53.99 89.58 54.96 44.11 39.28 48.09 42.65 45.20 8.04 132.98 67.77 55.61 69.50 64.05 35.77 46 ER9a ExonRegion 0 218.69 135.36 227.51 382.73 167.38 313.64 160.50 291.29 322.19 564.97 785.62 433.68 683.10 587.64 450.53 617.70 508.40 683.83 414.86 353.86 388.18 407.94 410.44 47 E9_Da NovelBoundary 0 35.86 34.40 6.56 5.86 29.71 49.35 15.15 26.99 43.89 53.35 36.43 12.15 21.59 30.26 15.20 8.54 8.51 97.95 44.80 56.25 22.86 27.07 41.15 48 E9a_E10a KnownJunction 0 120.10 62.03 45.89 125.96 54.50 147.87 59.75 120.31 128.82 167.89 228.37 107.89 174.66 97.24 78.62 137.57 145.02 347.71 213.56 132.37 192.50 158.17 138.46 49 E9a_E11a KnownJunction 1 149.80 74.20 169.66 320.47 105.60 243.67 107.71 120.72 104.48 264.59 401.05 268.74 631.13 334.28 279.99 361.53 246.75 249.51 239.54 115.11 181.69 195.76 194.37 50 I9 Intron 0 18.71 20.51 11.71 13.34 38.93 21.38 11.91 40.29 41.04 64.04 27.82 14.34 29.07 23.29 17.78 18.83 22.21 63.82 38.62 62.58 16.20 24.61 18.84 51 I9_AR1 ActiveIntronRegion 0 9.93 5.63 3.55 2.73 26.14 5.83 5.57 12.59 13.81 18.38 5.01 2.66 14.55 12.70 8.11 14.71 6.94 17.34 21.73 25.26 4.29 7.21 9.26 52 I9_AR2 ActiveIntronRegion 0 25.79 26.85 6.80 9.48 50.07 22.82 17.19 34.60 45.54 63.09 26.11 13.23 40.21 24.06 12.17 18.58 26.59 52.71 30.08 58.77 15.22 15.86 10.82 53 I9_SR1 SilentIntronRegion 0 18.04 20.43 13.69 15.33 37.84 22.66 11.37 44.47 42.75 68.84 30.50 15.81 28.14 24.16 20.12 19.35 22.79 71.18 42.66 67.37 17.62 28.44 21.57 54 E10_Aa NovelBoundary 0 89.35 20.65 17.09 14.45 73.77 48.38 14.88 72.54 64.21 78.38 21.95 12.60 61.20 25.49 45.37 19.82 13.56 118.60 39.15 75.93 19.58 39.62 57.96 55 ER10a ExonRegion 0 49.78 73.29 44.78 97.94 74.82 129.40 69.63 101.42 123.30 183.42 219.45 83.37 127.63 130.24 105.98 117.94 129.91 247.29 139.69 165.22 155.20 140.84 108.16 56 E10a_E11a KnownJunction 0 91.20 60.32 39.21 98.62 106.62 139.29 78.12 102.69 147.08 178.85 210.53 84.63 96.58 130.56 69.72 84.17 103.41 346.59 157.56 211.63 146.54 127.67 112.34 57 ER11a ExonRegion 0 134.57 143.51 261.73 455.63 141.10 253.76 118.69 238.46 261.03 483.41 554.91 395.95 583.94 527.65 443.05 508.01 369.24 592.40 375.75 360.08 297.22 377.43 301.02 58 E11_Da NovelBoundary 1 50.31 21.58 10.20 25.44 65.11 15.90 35.42 28.22 5.96 35.11 23.90 6.30 88.63 31.49 29.54 49.82 41.80 27.77 41.32 21.41 14.58 35.15 43.45 59 E11a_E12a KnownJunction 0 110.54 167.93 349.01 535.23 130.39 259.85 121.18 278.03 287.53 563.48 555.56 431.99 483.25 468.89 424.63 422.71 396.35 471.91 417.89 466.47 289.24 383.02 288.70 60 E11a_E13a NovelJunction 0 6.52 0.00 3.52 4.93 0.00 11.58 0.00 1.85 0.00 8.97 4.69 6.00 6.82 9.89 8.90 7.95 12.44 10.16 17.79 2.62 2.78 0.00 7.43 61 E12_Aa NovelBoundary 0 67.79 20.85 23.92 69.36 56.20 49.06 42.88 44.03 15.86 50.02 32.17 17.26 19.48 28.37 62.06 48.02 12.53 26.24 62.31 33.17 22.73 51.80 15.54 62 ER12a ExonRegion 0 119.59 115.42 261.03 363.83 132.15 233.49 112.79 230.30 202.03 467.43 528.47 376.26 469.71 422.84 352.27 326.73 361.08 407.95 223.84 315.98 286.94 236.88 202.48 63 E12a_E13a KnownJunction 0 387.11 269.43 311.99 603.39 421.65 527.20 356.17 336.48 260.30 586.15 615.21 499.66 585.19 652.19 768.90 648.46 492.85 699.15 613.57 534.48 379.37 511.05 500.91 64 ER13a ExonRegion 0 164.77 176.04 147.13 250.30 158.10 170.28 108.33 127.65 92.40 204.31 211.50 116.22 107.86 182.93 201.36 165.15 149.35 176.57 144.72 107.35 103.11 136.05 112.31 65 ER13b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00