Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BCL2L14 Gene 0 6.00 3.24 1.78 3.20 5.11 2.10 5.64 4.46 4.07 2.64 0.71 4.29 3.88 8.15 12.60 8.83 2.91 3.53 2.61 6.34 1.46 1.07 1.85 2 484949 Transcript 0 3.76 3.75 1.84 2.27 2.70 2.61 4.68 2.26 2.74 2.17 1.44 3.23 3.41 1.78 4.95 4.11 3.33 2.93 3.36 3.69 2.61 2.01 3.68 3 464885 Transcript 0 1.74 0.00 0.79 0.94 0.51 0.11 1.98 3.82 2.87 0.21 0.00 2.05 0.00 3.13 5.20 3.01 0.00 1.07 0.20 1.18 0.00 0.00 0.00 4 461264 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 479717 Transcript 0 0.00 0.19 0.31 0.76 0.74 0.00 0.24 0.35 0.67 0.00 0.00 0.33 0.00 2.62 3.26 1.95 0.00 0.51 0.00 0.77 0.00 0.00 0.00 6 466531 Transcript 0 0.00 0.00 0.28 0.81 3.83 0.74 2.10 1.56 0.80 0.45 0.00 0.00 1.11 0.20 2.09 0.13 0.00 0.66 0.61 2.43 0.00 0.00 1.24 7 308721 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 396361 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 396367 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 266434 Transcript 0 3.94 5.71 2.06 4.31 7.18 2.89 6.18 2.94 4.91 7.82 0.00 0.00 2.76 3.34 2.82 0.28 0.00 5.80 3.36 11.37 1.54 0.00 0.00 11 396369 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 298566 Transcript 0 0.19 2.11 0.65 1.25 1.77 0.28 1.63 0.71 0.71 0.57 0.00 1.29 0.87 0.39 0.71 0.46 0.79 0.77 0.76 1.26 0.37 0.11 0.00 13 IG50_AR6 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 9.65 1.80 0.46 7.75 4.34 0.53 1.67 0.00 0.00 1.07 0.00 0.00 0.00 14 IG50_AR7 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.54 9.79 0.00 1.82 7.16 4.93 2.71 0.33 0.00 0.00 0.12 0.00 0.00 0.00 15 IG50_AR8 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.28 0.59 0.58 2.43 1.69 16.82 3.38 2.28 10.63 7.01 1.99 1.69 0.00 0.00 0.58 0.49 0.00 0.00 16 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 17 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.87 0.00 0.00 0.00 18 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.04 0.00 0.00 0.00 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E2a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3a ExonRegion 0 7.52 7.50 3.69 4.55 5.40 5.23 9.35 4.52 5.49 4.35 2.88 6.47 6.82 3.57 9.91 8.22 6.66 5.85 6.71 7.38 5.23 4.02 7.35 24 ER4a ExonRegion 0 0.00 0.00 0.00 1.36 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4b ExonRegion 0 3.83 0.00 0.47 1.01 3.43 0.94 2.05 0.66 0.95 0.45 0.00 0.00 0.00 6.31 4.07 3.30 4.25 0.71 2.46 3.32 0.00 0.00 0.00 26 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E4a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E4a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E5_Aa NovelBoundary 0 2.82 0.00 0.00 3.90 0.00 0.00 2.25 2.09 1.16 7.84 0.00 0.00 0.00 7.06 14.22 11.11 0.00 0.00 0.00 11.51 0.00 0.00 0.00 30 E5_Ab NovelBoundary 0 3.56 0.00 3.67 0.00 0.00 2.21 6.01 4.68 3.56 6.10 0.00 0.00 0.00 16.95 17.80 45.97 9.54 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 0.80 0.00 0.00 0.33 0.37 0.57 0.00 1.55 0.00 0.00 0.00 0.00 0.00 3.64 5.40 7.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5b ExonRegion 0 2.25 0.00 0.08 1.47 2.34 0.48 1.70 1.79 3.36 0.55 0.00 0.00 1.27 11.51 15.60 13.83 3.13 4.13 0.00 1.42 0.00 0.00 0.00 33 E5_Da KnownBoundary 0 0.00 0.00 0.00 5.63 3.82 0.00 0.00 2.55 2.23 0.00 0.00 0.00 0.00 2.30 9.27 0.00 0.00 0.00 0.00 6.39 0.00 0.00 0.00 34 E5a_E6a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.62 0.00 0.00 0.00 0.00 6.95 14.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E5a_E8a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 9.89 4.45 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5c ExonRegion 0 0.00 0.56 0.94 0.93 1.68 0.00 0.73 1.06 2.02 0.00 0.00 0.98 0.00 4.10 5.32 4.06 0.00 1.52 0.00 2.30 0.00 0.00 0.00 37 ER6a ExonRegion 0 2.41 0.00 0.00 1.49 1.53 0.34 0.74 4.00 2.69 0.63 0.00 0.16 0.00 4.58 11.15 5.68 0.00 1.59 0.59 3.54 0.00 0.00 0.00 38 E6a_E8a KnownJunction 0 2.82 0.00 2.37 1.33 0.00 0.00 5.21 7.48 5.93 0.00 0.00 6.00 0.00 4.83 4.45 3.33 0.00 1.62 0.00 0.00 0.00 0.00 0.00 39 ER7a ExonRegion 0 2.36 4.94 1.52 2.13 3.00 0.20 7.28 3.31 2.23 3.21 0.00 0.00 0.72 2.02 6.36 0.47 0.00 0.60 0.20 5.95 0.00 0.00 0.29 40 E7_Da KnownBoundary 0 0.00 0.00 3.64 2.03 0.00 5.22 9.23 4.23 1.79 3.33 0.00 0.00 0.00 4.83 9.64 3.33 0.00 0.00 9.32 11.19 0.00 0.00 7.60 41 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER7b ExonRegion 0 0.00 0.00 0.56 1.62 7.67 1.48 4.21 3.13 1.61 0.90 0.00 0.00 2.21 0.40 4.17 0.27 0.00 1.33 1.22 4.85 0.00 0.00 2.47 43 E7_Db NovelBoundary 0 3.78 16.12 0.00 1.66 7.47 0.00 13.82 1.73 1.16 2.85 0.00 0.00 0.00 9.89 4.45 0.00 0.00 0.00 0.00 18.60 0.00 0.00 0.00 44 ER8a ExonRegion 0 8.56 0.66 0.00 2.81 9.27 2.27 2.94 4.41 4.52 0.00 0.00 5.76 0.24 20.92 22.90 33.58 2.19 3.73 0.00 4.07 0.24 0.00 0.00 45 E8_Da KnownBoundary 0 13.63 0.00 0.00 1.43 3.40 5.28 8.70 4.39 4.28 0.00 0.00 0.00 0.00 11.95 5.07 18.03 0.00 3.48 0.00 2.56 2.97 0.00 0.00 46 ER8b ExonRegion 0 10.95 0.96 0.00 3.81 5.13 1.82 3.18 6.55 4.95 0.00 0.00 9.80 5.86 19.93 21.22 11.20 0.00 5.83 2.08 4.70 0.87 0.72 0.00 47 E8_Db KnownBoundary 0 14.00 0.00 0.00 5.19 16.98 0.00 5.92 8.38 4.60 0.00 0.00 13.20 0.00 21.48 19.41 26.66 0.00 4.15 4.05 6.07 0.00 3.12 0.00 48 ER8c ExonRegion 0 8.47 1.55 0.00 3.32 5.71 0.00 1.01 5.80 3.08 0.00 0.00 10.60 8.82 20.24 20.44 13.22 0.00 4.36 0.57 6.00 0.00 0.84 0.00 49 E8c_E9a KnownJunction 0 3.33 0.00 0.00 1.63 3.74 0.00 0.00 7.23 1.50 0.00 0.00 0.00 6.01 24.66 35.85 10.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER9a ExonRegion 0 5.55 0.60 1.13 3.38 5.97 0.00 3.79 4.41 2.87 0.53 0.57 3.46 6.15 21.15 21.98 19.03 0.00 1.65 0.00 5.12 0.00 0.00 0.00 51 E9a_E10a KnownJunction 0 7.33 0.00 0.00 0.00 4.33 0.00 2.03 0.00 0.00 0.00 0.00 0.00 6.82 30.84 30.29 8.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E10_Aa NovelBoundary 0 10.30 0.00 2.34 2.96 11.63 0.00 0.00 18.11 10.04 4.11 0.00 6.30 0.00 0.00 9.77 0.00 0.00 0.00 0.00 5.82 0.00 0.00 0.00 53 ER10a ExonRegion 0 7.81 0.00 1.16 0.00 4.52 0.28 4.03 4.21 3.11 1.15 0.00 8.23 12.68 23.42 27.95 25.12 4.74 0.00 0.00 7.28 0.00 0.00 0.00 54 E10a_E11a KnownJunction 0 3.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E10a_E11b KnownJunction 0 9.93 0.00 0.00 0.00 3.90 2.38 0.00 2.55 5.38 0.00 0.00 0.00 6.82 19.01 8.90 19.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E10a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER11a ExonRegion 0 5.57 1.38 1.80 2.74 6.74 0.00 3.30 0.00 6.51 1.93 0.00 0.00 4.86 1.64 1.86 0.00 2.08 3.58 4.01 9.82 0.00 0.00 0.00 58 E11_Da KnownBoundary 0 3.78 0.00 4.32 5.16 16.98 0.00 6.27 0.00 10.47 7.09 0.00 0.00 13.64 0.00 0.00 0.00 0.00 0.00 0.00 20.84 0.00 0.00 0.00 59 ER11b ExonRegion 0 3.94 5.71 2.06 4.31 7.18 2.89 6.18 2.94 4.91 7.82 0.00 0.00 2.76 3.34 2.82 0.28 0.00 5.80 3.36 11.37 1.54 0.00 0.00 60 E11_Ab KnownBoundary 0 0.00 11.45 1.30 7.29 8.66 7.67 3.36 7.52 3.39 5.94 0.00 0.00 0.00 4.94 4.45 0.00 0.00 6.47 8.38 11.19 0.00 0.00 0.00 61 ER11c ExonRegion 0 10.13 1.91 1.34 3.17 13.00 1.94 4.66 6.65 6.10 2.51 0.00 9.11 4.23 19.09 24.07 14.57 1.27 2.60 3.38 6.53 0.00 0.40 0.00 62 E11b_E12a KnownJunction 0 7.19 0.00 0.00 1.83 15.45 0.00 0.00 6.24 3.30 0.00 0.00 12.60 0.00 11.71 30.16 25.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER12a ExonRegion 0 12.36 2.94 3.67 5.46 8.05 2.55 9.60 10.91 7.27 5.18 0.00 7.54 5.69 14.57 26.41 16.07 4.91 5.95 2.52 14.41 0.44 0.00 0.00 64 E12_Da KnownBoundary 0 0.00 6.45 5.09 4.56 13.92 0.00 0.00 11.83 8.19 4.51 0.00 6.15 6.82 12.13 10.75 8.29 0.00 9.53 0.00 9.08 0.00 0.00 0.00 65 ER12b ExonRegion 0 8.84 1.99 1.90 3.38 3.99 2.02 7.25 6.09 5.30 5.05 0.00 3.30 5.26 8.83 15.66 5.20 1.45 3.78 1.40 10.65 0.00 0.00 0.65 66 E12_Db NovelBoundary 0 10.74 9.34 2.81 6.53 8.32 0.00 28.35 6.57 6.74 6.77 0.00 12.60 0.00 2.47 9.64 4.19 0.00 3.98 8.00 5.69 2.78 0.00 0.00 67 ER13a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 68 E13_Da NovelBoundary 0 0.00 11.25 1.18 2.06 18.68 7.55 23.72 4.39 4.63 5.83 0.00 0.00 6.66 2.47 0.00 0.00 0.00 4.68 13.74 20.01 5.07 0.00 0.00 69 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 Ix Intron 0 6.24 19.04 7.03 17.38 15.52 11.85 32.22 10.41 15.14 11.37 1.84 12.99 23.00 7.84 8.35 6.92 13.18 17.54 7.27 29.93 3.98 7.63 5.16 71 Ix_SR1 SilentIntronRegion 0 6.89 19.75 6.35 18.07 16.94 12.54 35.25 10.78 15.97 11.86 1.68 13.72 23.60 7.90 8.83 6.59 13.34 16.48 6.29 30.77 3.92 8.30 5.16 72 Ix Intron 0 3.37 18.72 5.87 18.63 16.13 8.07 32.32 8.67 10.75 8.47 0.93 8.58 17.65 8.53 9.99 6.71 15.02 15.88 12.02 31.24 4.56 5.47 6.84 73 Ix_SR1 SilentIntronRegion 0 3.37 18.74 5.88 18.64 16.14 8.08 32.34 8.67 10.76 8.47 0.93 8.59 17.66 8.54 9.99 6.71 15.03 15.89 12.02 31.26 4.56 5.47 6.85 74 ER14a ExonRegion 0 1.80 5.47 0.00 6.43 0.00 0.00 10.36 4.03 0.78 6.42 0.00 0.00 0.00 0.57 2.76 2.53 2.70 1.96 2.23 2.43 2.55 0.89 0.00 75 E14b_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER14b ExonRegion 0 0.00 2.63 0.00 2.39 0.00 0.00 1.65 1.73 0.00 0.57 0.00 0.00 0.00 0.00 0.36 0.00 0.55 0.00 2.39 1.42 1.29 0.00 0.00 77 Ix Intron 0 1.12 7.35 0.97 5.83 9.95 0.19 10.97 6.84 4.50 2.72 0.00 4.90 2.05 0.83 13.58 4.11 1.75 3.13 4.74 6.56 0.94 0.89 2.18 78 Ix_SR2 SilentIntronRegion 0 4.23 14.24 4.57 12.15 18.84 0.92 12.34 14.17 7.06 4.41 0.00 9.04 2.71 0.67 23.98 11.98 0.00 4.13 15.93 9.70 2.14 0.04 4.40 79 Ix_AR1 ActiveIntronRegion 0 4.42 4.12 10.66 10.70 8.61 1.17 12.10 3.44 5.66 2.25 0.25 0.97 8.41 0.46 4.17 1.13 7.05 2.46 15.69 9.36 0.84 0.00 2.61 80 ER15a ExonRegion 0 0.01 5.24 0.00 2.08 4.11 1.41 4.75 0.66 1.86 0.00 0.00 4.61 1.11 1.39 1.02 2.29 3.38 1.43 0.00 1.09 0.56 0.53 0.00 81 E15_Da NovelBoundary 0 0.00 5.72 0.00 9.46 0.00 0.00 4.42 2.55 3.27 0.00 0.00 0.00 8.12 0.00 0.00 0.00 16.27 4.19 0.00 2.75 3.15 0.00 0.00 82 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 83 E16_Aa NovelBoundary 0 0.00 6.71 0.00 2.06 0.00 2.27 9.76 4.89 3.36 0.00 2.26 0.00 0.00 2.47 4.45 0.00 0.00 1.70 0.00 22.18 0.00 0.00 0.00 84 ER16a ExonRegion 0 0.92 2.71 3.25 1.80 4.75 0.00 1.76 1.14 1.68 2.27 0.00 1.84 3.22 0.56 2.17 0.00 0.00 2.43 1.41 3.77 0.00 0.00 0.00