Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 U47924.1 Gene 0 113.06 45.15 63.47 75.03 94.46 63.81 69.05 125.13 80.22 116.19 230.80 97.09 119.14 191.31 275.55 205.03 231.89 86.47 72.35 63.01 108.83 96.91 92.26 2 261407 Transcript 0 128.78 41.83 62.12 77.03 107.71 65.18 77.44 136.06 88.70 122.96 261.75 94.84 139.83 209.75 283.46 222.41 258.29 82.91 70.40 55.99 119.01 112.72 92.37 3 ER1a ExonRegion 1 45.53 11.37 12.38 14.31 31.00 28.90 25.24 28.04 20.98 42.98 101.58 13.00 24.92 63.75 94.13 157.33 93.76 61.34 38.00 21.48 42.75 39.41 85.38 4 E1a_E2a KnownJunction 0 30.75 0.00 30.48 30.67 7.89 2.33 13.51 63.79 62.53 71.72 179.57 39.61 58.60 188.95 254.90 286.34 144.27 97.37 81.88 29.53 64.00 83.52 133.08 5 Ix Intron 0 21.39 18.49 20.10 39.47 28.54 8.29 23.56 10.70 6.62 20.20 6.89 19.21 23.84 11.13 15.92 15.83 14.14 17.82 14.83 21.71 5.37 6.18 9.39 6 Ix_AR12 ActiveIntronRegion 0 5.09 2.23 5.12 5.06 2.81 0.79 4.25 4.25 2.91 6.70 3.46 5.05 6.28 2.16 6.55 5.73 7.19 17.34 4.59 10.72 6.17 1.65 5.11 7 Ix_AR11 ActiveIntronRegion 0 9.90 7.04 7.32 12.54 9.71 2.75 11.38 6.33 3.96 9.05 0.82 5.35 13.55 2.58 6.66 11.48 6.11 4.94 5.61 21.99 1.97 5.21 7.64 8 Ix_SR8 SilentIntronRegion 0 19.96 14.17 9.97 18.98 7.45 2.20 13.69 7.13 4.15 15.42 3.10 9.85 8.19 0.44 4.07 9.16 15.20 6.56 5.16 13.61 5.00 5.68 10.28 9 Ix_AR10 ActiveIntronRegion 0 14.74 10.47 14.56 32.58 21.23 3.29 15.44 13.43 4.96 14.14 3.78 10.99 15.83 3.28 10.25 17.26 12.32 10.98 9.45 17.34 4.13 7.17 7.56 10 Ix_AR9 ActiveIntronRegion 0 4.72 10.64 7.35 35.02 16.47 12.84 6.82 18.75 3.99 14.29 1.78 4.33 18.76 6.00 17.18 15.32 7.11 8.67 3.19 17.02 3.73 6.25 5.87 11 Ix_AR8 ActiveIntronRegion 0 4.87 10.78 6.62 33.25 17.12 9.35 8.87 17.28 4.32 12.16 3.87 10.82 18.76 4.55 7.54 20.21 14.19 9.05 3.19 23.40 4.41 1.88 4.11 12 Ix_SR7 SilentIntronRegion 0 21.15 12.55 12.24 28.71 15.64 3.20 18.31 9.24 6.01 13.35 3.03 12.15 21.65 3.06 11.91 13.71 10.70 14.93 12.00 17.76 3.63 3.78 5.74 13 Ix_AR5 ActiveIntronRegion 0 13.37 6.73 16.93 31.21 19.79 3.94 19.59 6.35 6.74 16.07 3.70 24.90 21.52 6.47 10.82 4.56 15.25 8.20 12.84 20.54 2.19 5.41 7.12 14 Ix_SR4 SilentIntronRegion 0 14.10 5.63 16.35 37.49 24.69 3.18 20.65 9.85 6.71 11.59 5.76 17.62 24.89 4.49 9.82 11.41 12.03 5.77 9.12 23.94 3.39 4.40 6.39 15 Ix_SR3 SilentIntronRegion 0 25.89 16.11 11.59 26.87 24.60 8.11 20.72 8.62 3.82 14.79 4.98 14.67 16.54 8.01 14.98 12.69 11.43 10.50 9.56 17.92 3.05 5.61 8.69 16 Ix_AR3 ActiveIntronRegion 0 10.53 14.66 9.99 35.85 27.96 6.84 18.11 3.20 3.21 11.47 5.29 18.04 19.65 16.57 17.24 17.01 14.68 9.62 8.70 13.76 3.84 10.86 9.50 17 Ix_SR2 SilentIntronRegion 0 16.85 27.28 18.42 44.21 67.18 9.89 40.85 7.72 8.28 23.38 5.51 33.46 20.16 13.79 16.09 9.37 8.88 7.27 7.83 13.70 1.03 10.64 5.16 18 Ix_AR2 ActiveIntronRegion 0 28.09 30.15 39.39 62.95 38.51 19.31 30.06 18.27 10.48 34.85 14.54 18.97 19.76 24.67 24.63 33.21 20.80 43.84 31.22 28.51 13.58 7.54 16.13 19 Ix_SR1 SilentIntronRegion 0 40.52 44.77 49.07 99.02 69.91 18.54 49.81 20.35 12.02 48.03 17.80 49.77 62.22 30.12 33.09 25.47 26.14 33.30 31.47 42.46 9.20 11.61 18.63 20 Ix Intron 0 18.46 16.35 26.18 41.79 23.57 7.16 18.59 11.35 7.89 16.22 5.83 10.64 21.71 9.18 15.16 14.41 17.57 19.02 18.37 22.58 7.62 6.41 10.25 21 Ix_SR1 SilentIntronRegion 0 18.47 16.36 26.20 41.82 23.59 7.16 18.61 11.35 7.89 16.23 5.83 10.65 21.73 9.18 15.17 14.42 17.58 19.03 18.38 22.59 7.62 6.41 10.25 22 Ix Intron 0 18.64 18.21 13.10 32.25 17.87 7.80 20.96 11.98 5.74 14.37 2.87 11.19 13.81 3.90 8.98 10.29 6.20 8.87 7.72 11.58 2.83 7.42 7.70 23 Ix_SR1 SilentIntronRegion 0 18.65 18.23 13.11 32.28 17.89 7.81 20.98 11.99 5.74 14.39 2.87 11.20 13.82 3.91 8.99 10.30 6.21 8.88 7.73 11.59 2.84 7.43 7.71 24 E2_Aa NovelBoundary 0 20.52 14.27 11.15 26.84 16.13 4.71 18.28 8.46 9.61 18.16 10.37 6.60 20.62 0.00 13.97 7.78 24.03 11.07 8.94 18.34 5.93 4.84 4.35 25 ER2a ExonRegion 0 37.37 15.85 43.33 52.89 92.66 43.59 65.90 95.87 62.93 92.30 209.84 50.83 67.05 154.49 224.95 338.60 194.11 103.78 67.81 48.78 87.48 88.24 160.05 26 E2a_E3a KnownJunction 0 72.61 29.67 38.53 53.74 128.10 96.48 125.02 84.86 60.97 91.79 227.32 111.94 60.39 132.62 174.30 245.75 213.93 90.00 40.28 49.41 115.03 123.57 60.69 27 Ix Intron 0 20.28 17.32 13.42 33.08 15.67 9.96 18.18 11.52 8.62 19.47 5.35 14.26 18.74 13.79 14.25 16.14 12.30 14.38 13.57 17.90 7.74 8.87 12.82 28 Ix_AR2 ActiveIntronRegion 0 24.64 20.56 16.78 41.99 18.03 12.64 23.32 13.41 10.71 25.13 6.51 18.76 23.96 18.44 17.09 20.94 14.66 19.42 18.05 22.81 9.79 9.89 16.64 29 E3_Aa NovelBoundary 1 34.30 34.01 24.75 61.20 26.91 13.46 10.20 17.74 11.28 17.27 1.95 11.70 62.98 4.89 24.97 17.52 8.98 32.58 8.85 18.79 14.33 17.15 11.35 30 ER3a ExonRegion 1 92.22 54.64 59.73 77.20 77.37 59.35 69.61 114.89 77.96 112.99 246.94 51.39 135.70 169.49 185.60 173.80 224.80 91.06 49.51 68.36 105.65 89.44 67.82 31 E3_Da NovelBoundary 0 21.11 27.30 19.99 22.54 20.20 9.71 7.64 8.95 7.09 14.80 9.05 0.00 6.82 9.59 23.86 16.24 12.72 22.26 18.64 12.27 11.00 8.33 14.94 32 E3a_E4a KnownJunction 1 171.22 39.73 73.83 78.18 81.75 42.53 62.98 107.45 77.81 113.46 270.02 51.62 155.83 158.69 140.06 149.11 273.21 74.45 57.13 61.62 145.98 117.94 56.17 33 Ix_AR2 ActiveIntronRegion 0 11.38 21.61 18.38 38.84 10.37 1.83 9.60 5.19 4.79 22.94 10.87 5.41 9.38 13.20 26.47 19.32 11.55 24.94 19.11 20.21 5.51 4.95 11.75 34 E4_Aa NovelBoundary 0 14.15 12.17 24.54 18.91 8.40 2.73 11.84 19.30 5.21 30.86 15.53 6.75 20.13 7.71 5.56 6.49 18.14 12.64 4.80 13.68 16.93 9.37 3.59 35 ER4a ExonRegion 0 77.16 47.36 48.70 73.47 49.19 45.44 54.40 114.32 76.71 123.85 291.91 65.77 142.45 202.01 210.16 173.05 223.83 74.15 33.85 69.92 115.65 100.54 54.89 36 E4_Da NovelBoundary 0 13.48 2.83 22.21 30.80 33.87 21.58 23.01 8.87 16.49 17.16 12.06 5.85 0.00 7.65 28.56 20.85 9.54 20.64 12.99 17.71 8.40 2.33 16.82 37 E4a_E5a KnownJunction 0 110.91 47.75 41.04 65.96 52.55 16.30 48.98 119.36 70.05 99.01 202.58 89.88 85.38 168.29 204.46 156.88 223.75 53.31 31.06 66.22 96.19 96.50 16.48 38 ER5a ExonRegion 0 76.86 27.83 49.95 61.19 53.02 32.67 57.56 134.96 77.52 126.10 219.54 71.55 109.23 187.50 202.71 165.66 203.87 52.03 38.14 60.13 107.63 104.83 53.32 39 E5_Da NovelBoundary 0 42.45 55.85 38.82 38.42 47.54 10.11 18.64 19.76 18.29 30.49 12.32 6.30 14.77 14.95 29.05 28.88 21.04 36.02 34.26 36.05 16.68 8.63 7.94 40 E5a_E6a KnownJunction 1 126.91 20.59 42.81 52.71 83.53 64.39 87.35 117.31 81.94 109.46 280.23 60.92 192.36 244.57 337.72 226.86 244.23 57.21 48.94 50.75 128.19 146.90 95.27 41 Ix Intron 0 19.12 16.38 21.48 31.69 21.24 12.05 15.58 17.87 15.72 24.32 14.61 16.57 20.55 16.62 29.55 21.72 25.79 20.59 17.37 18.99 13.64 12.13 12.37 42 Ix_AR1 ActiveIntronRegion 0 19.21 16.46 21.59 31.85 21.35 12.11 15.66 17.96 15.80 24.43 14.68 16.65 20.65 16.71 29.69 21.83 25.91 20.69 17.45 19.08 13.70 12.19 12.43 43 E6_Aa NovelBoundary 0 64.31 18.35 39.62 65.46 26.32 22.88 59.18 49.62 13.77 34.60 22.01 0.00 31.82 18.78 29.42 16.24 41.14 28.98 25.13 28.44 14.89 19.04 30.47 44 ER6a ExonRegion 0 105.13 45.24 59.89 104.81 85.97 71.00 78.12 158.03 107.86 160.18 311.45 123.14 199.34 233.73 283.09 243.60 287.55 90.45 83.35 63.14 136.45 128.76 101.31 45 E6_Da NovelBoundary 0 30.60 62.49 19.60 56.57 3.57 15.79 11.57 14.29 19.73 34.87 15.11 14.40 18.83 26.72 39.56 39.05 44.51 45.64 8.75 19.11 22.49 25.53 22.96 46 E6a_E7a KnownJunction 0 156.25 42.56 62.92 91.86 185.91 115.44 89.43 172.43 105.76 175.84 304.66 94.08 132.13 246.10 325.86 275.40 317.06 56.42 82.45 42.57 142.15 128.47 94.92 47 Ix Intron 0 46.66 36.00 33.53 44.10 28.17 14.48 26.84 28.65 20.95 33.63 16.79 18.67 21.31 21.94 39.84 37.76 33.47 29.99 29.14 30.10 13.05 17.03 21.06 48 Ix_AR2 ActiveIntronRegion 0 26.15 43.15 19.38 37.55 20.47 6.24 21.62 18.59 8.44 26.62 7.60 9.26 12.39 16.01 28.29 20.95 23.66 21.65 22.49 19.20 5.32 11.84 10.12 49 Ix_AR1 ActiveIntronRegion 0 64.23 34.02 45.72 52.02 35.51 21.16 32.38 37.73 31.01 41.02 24.31 26.54 29.06 27.69 50.88 52.14 42.67 37.95 36.03 39.77 19.32 21.88 30.15 50 E7_Aa NovelBoundary 0 52.53 52.42 70.28 70.85 16.38 44.69 39.44 34.34 26.76 65.25 46.96 48.47 6.33 28.84 86.28 58.70 63.67 57.58 38.12 71.20 35.34 14.08 23.56 51 ER7a ExonRegion 0 182.29 79.27 89.02 113.76 116.24 103.00 77.49 172.85 126.82 161.69 299.67 133.54 182.18 268.37 345.62 283.69 308.04 111.59 113.56 87.49 143.75 151.10 125.95 52 E7_Da NovelBoundary 1 58.68 51.64 73.59 63.66 31.58 30.32 43.41 47.65 26.71 45.91 33.48 68.27 22.56 75.40 57.61 51.78 35.44 52.27 61.84 61.87 29.90 25.84 27.74 53 E7a_E8a KnownJunction 1 139.43 52.03 76.31 78.91 88.71 57.98 69.07 177.48 118.05 129.10 207.58 68.27 206.64 294.96 427.84 279.93 280.97 62.14 139.11 52.22 140.23 163.19 133.59 54 Ix Intron 0 56.67 52.19 59.26 64.99 44.03 36.64 35.79 41.71 24.88 62.95 37.11 45.97 31.23 54.02 59.35 65.21 54.32 57.95 50.55 52.80 32.52 38.37 32.41 55 Ix_AR1 ActiveIntronRegion 0 56.81 52.32 59.42 65.16 44.14 36.74 35.88 41.82 24.94 63.11 37.20 46.08 31.31 54.15 59.50 65.37 54.46 58.10 50.68 52.93 32.60 38.47 32.49 56 E8_Aa NovelBoundary 0 92.46 57.82 81.04 70.59 63.75 34.47 44.16 58.33 30.41 73.98 28.69 34.66 26.62 50.92 70.59 60.92 65.26 101.85 59.67 68.39 49.92 57.87 35.60 57 ER8a ExonRegion 0 137.14 64.58 85.34 90.39 96.23 70.02 85.14 177.40 103.86 163.07 350.77 146.06 171.91 294.17 343.62 232.78 323.60 96.78 101.71 81.71 160.06 124.13 118.11 58 E8_Da NovelBoundary 0 56.68 23.75 79.21 79.01 49.15 42.59 37.32 55.37 36.54 78.06 40.38 56.42 46.43 65.28 85.42 54.43 53.30 97.54 65.70 79.13 38.24 39.80 27.83 59 E8a_E9a KnownJunction 0 68.90 30.46 59.25 69.82 101.10 45.37 77.15 156.99 81.89 155.10 313.08 124.99 175.64 195.66 266.52 180.12 253.20 64.58 52.14 28.63 112.13 85.30 64.88 60 Ix Intron 0 15.91 20.74 17.65 7.63 12.93 8.86 14.22 12.44 1.98 16.52 16.60 19.96 8.29 34.47 41.78 30.32 31.90 22.19 39.33 26.27 28.39 13.42 12.61 61 Ix_AR1 ActiveIntronRegion 0 16.23 21.14 18.01 7.78 13.15 9.05 14.52 12.71 2.02 16.87 16.96 20.39 8.47 35.19 42.65 30.97 32.58 22.65 40.18 26.84 28.96 13.71 12.88 62 E9_Aa NovelBoundary 0 89.35 47.36 70.43 63.89 23.94 41.51 32.37 66.46 21.04 62.91 37.96 24.91 50.48 49.44 31.03 72.89 46.19 81.00 61.84 75.61 59.37 30.74 10.07 63 ER9a ExonRegion 0 123.26 46.92 76.99 109.30 137.49 100.33 85.83 173.27 103.85 175.67 311.69 166.23 196.05 280.64 366.67 256.01 320.56 129.27 97.79 86.05 154.76 136.19 106.63 64 E9_Da NovelBoundary 0 19.11 28.61 29.83 34.59 19.95 45.60 49.77 55.08 30.90 68.50 62.28 34.81 20.13 61.33 59.71 50.59 46.19 75.74 22.21 56.82 23.35 30.92 43.54 65 E9a_E10a KnownJunction 0 75.35 20.13 31.78 90.43 77.76 29.47 75.34 141.91 85.18 116.69 218.95 93.03 152.91 182.06 316.46 236.35 281.35 96.59 73.70 33.75 115.15 102.44 100.30 66 Ix Intron 0 34.88 20.66 22.52 25.26 28.56 26.80 26.76 28.56 18.12 43.58 37.46 21.67 22.08 45.85 62.01 48.99 43.46 40.38 33.68 44.55 28.77 18.14 18.87 67 Ix_AR1 ActiveIntronRegion 0 35.01 20.74 22.61 25.36 28.67 26.91 26.87 28.67 18.19 43.76 37.61 21.76 22.17 46.04 62.26 49.19 43.62 40.54 33.80 44.73 28.89 18.21 18.95 68 E10_Aa NovelBoundary 0 38.67 46.50 44.11 33.60 59.85 32.08 28.66 43.54 45.86 54.15 16.69 0.00 27.11 53.21 46.73 40.16 72.93 53.56 40.19 26.14 36.76 3.12 20.40 69 ER10a ExonRegion 0 109.52 45.63 71.43 100.96 126.21 80.85 91.68 165.13 99.78 142.95 294.99 114.58 176.54 251.16 355.60 215.76 349.16 122.93 81.05 62.09 159.55 117.96 105.98 70 E10_Da NovelBoundary 0 17.34 18.55 20.05 39.95 20.12 21.81 28.75 34.91 25.12 36.64 26.38 10.65 13.64 19.95 51.55 20.51 25.15 55.42 41.22 51.20 24.83 19.41 19.63 71 E10a_E11a KnownJunction 0 370.14 36.31 77.05 78.48 180.82 104.14 108.38 154.81 104.77 138.26 305.81 107.59 193.33 291.72 315.10 271.38 322.49 103.30 91.20 33.49 168.71 116.71 105.17 72 E11_Aa NovelBoundary 0 31.26 26.77 26.94 21.98 33.11 33.45 43.81 40.50 24.74 45.24 29.95 31.66 33.28 44.56 70.83 55.80 53.58 56.17 31.72 48.83 38.86 25.96 20.40 73 ER11a ExonRegion 0 156.24 47.63 71.11 88.70 123.91 74.83 88.70 131.06 92.46 121.82 230.16 132.82 160.58 226.98 316.91 183.43 293.68 88.22 85.78 61.58 132.79 106.33 90.35 74 E11_Da NovelBoundary 0 10.00 39.99 36.16 45.25 30.39 13.69 42.31 11.83 20.75 29.84 35.75 24.91 13.47 59.51 13.60 51.18 40.77 36.60 16.19 45.89 28.17 17.33 43.36 75 E11a_E12a KnownJunction 0 164.77 58.28 81.22 86.80 221.31 105.00 139.07 159.41 91.61 99.74 346.19 123.19 137.98 218.44 388.03 173.80 314.07 68.81 69.37 50.05 92.11 142.92 78.19 76 Ix Intron 0 6.23 5.98 11.64 12.95 11.81 8.99 12.34 3.79 4.51 12.57 17.06 44.21 22.46 30.41 22.51 21.86 30.76 22.99 24.99 24.00 16.21 4.09 12.96 77 Ix_AR1 ActiveIntronRegion 0 6.35 6.10 11.87 13.20 12.01 9.17 12.58 3.86 4.60 12.81 17.40 45.08 22.90 31.00 22.93 22.29 31.33 23.42 25.48 24.45 16.53 4.17 13.21 78 E12_Aa NovelBoundary 1 35.41 21.77 45.30 59.27 27.42 22.66 44.56 21.28 11.83 40.48 37.06 76.67 41.56 58.69 33.01 36.57 62.37 42.45 16.75 66.15 16.62 26.33 38.75 79 ER12a ExonRegion 0 200.99 63.80 104.67 100.85 202.36 107.30 122.47 155.96 118.69 136.54 304.78 140.66 154.88 231.20 367.22 223.35 283.88 73.78 72.37 81.99 108.12 113.14 105.67 80 E12_Da NovelBoundary 0 26.23 20.92 38.41 40.99 51.27 17.38 28.53 16.72 8.88 39.19 9.32 12.60 42.04 26.72 42.65 34.35 50.77 15.01 13.08 43.98 5.75 22.84 18.95 81 E12a_E13a KnownJunction 0 267.83 68.67 96.03 95.29 206.96 79.33 77.55 204.38 138.14 115.91 333.61 102.33 148.85 195.66 346.99 255.83 294.90 79.22 57.13 44.23 109.65 128.90 118.83 82 Ix Intron 0 17.40 19.29 28.86 32.08 21.43 18.16 32.09 17.36 9.31 30.61 27.31 32.90 19.94 38.86 37.08 41.97 46.61 31.96 44.29 43.94 18.58 26.78 16.09 83 Ix_AR1 ActiveIntronRegion 0 17.53 19.44 29.09 32.35 21.61 18.32 32.35 17.51 9.39 30.86 27.54 33.17 20.11 39.18 37.39 42.32 47.00 32.22 44.65 44.30 18.73 27.00 16.22 84 E13_Aa NovelBoundary 0 3.41 27.63 48.79 44.98 39.22 38.50 23.98 46.70 20.40 53.54 55.01 24.91 46.43 44.50 9.15 26.40 56.66 46.88 42.73 51.71 54.49 40.60 24.16 85 ER13a ExonRegion 0 120.76 49.34 69.13 65.09 84.81 53.53 59.99 119.64 69.48 97.67 180.79 93.92 74.80 162.63 292.10 175.53 187.08 74.07 72.71 64.69 91.11 81.49 76.29