Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GNB3 Gene 0 22.29 31.77 126.85 105.05 31.94 45.77 27.14 108.97 65.95 99.14 8.56 3.63 2.94 15.49 8.44 10.64 6.92 99.38 54.07 78.84 51.31 15.70 24.15 2 435982 Transcript 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 229264 Transcript 0 18.12 33.09 135.18 107.51 36.35 58.70 37.51 112.16 59.49 102.88 12.82 7.70 7.82 28.62 23.77 18.36 11.79 101.29 56.13 74.54 49.42 11.06 14.04 4 IG31 Intergenic 0 7.58 18.35 52.05 37.82 23.77 37.83 18.59 66.05 46.94 66.11 0.00 1.02 0.55 0.00 0.29 0.85 0.00 73.82 47.91 56.39 33.74 11.04 17.25 5 IG31_SR1 SilentIntergenicRegion 0 6.15 12.31 35.98 23.52 15.69 17.71 10.69 44.83 29.01 62.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55.14 36.57 50.80 25.57 7.10 18.38 6 IG31_AR1 ActiveIntergenicRegion 0 8.23 20.88 58.87 43.78 27.15 45.97 21.84 75.01 54.38 68.44 0.00 1.42 0.77 0.00 0.41 1.18 0.00 81.94 52.86 59.32 37.33 12.70 17.08 7 ER1a ExonRegion 0 14.91 20.25 57.12 43.36 17.55 45.90 22.51 61.21 55.74 66.83 0.00 0.00 0.00 0.00 2.78 3.61 0.80 67.71 64.98 67.09 53.04 16.15 24.25 8 E1_Da NovelBoundary 0 17.41 35.39 110.70 79.51 38.79 77.46 42.93 107.57 77.81 119.62 0.00 0.00 0.00 2.18 0.00 0.00 0.00 161.71 119.25 141.19 80.00 16.90 59.16 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.28 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1 Intron 0 1.83 5.55 33.46 29.93 8.28 14.98 7.54 49.42 33.27 55.02 0.48 0.76 0.00 0.17 0.00 0.00 0.41 61.52 33.92 41.36 33.83 10.57 10.91 11 I1_AR1 ActiveIntronRegion 0 1.84 5.57 33.62 30.07 8.32 15.06 7.58 49.66 33.44 55.28 0.49 0.76 0.00 0.17 0.00 0.00 0.41 61.81 34.08 41.56 34.00 10.63 10.96 12 ER2a ExonRegion 0 2.62 3.14 16.43 12.95 8.71 10.18 5.32 14.22 10.69 26.90 0.00 0.00 0.00 0.00 2.80 0.63 0.00 26.74 9.07 22.50 21.40 3.64 7.24 13 E2_Da NovelBoundary 0 0.00 9.54 22.94 30.37 0.00 5.28 8.39 16.35 22.97 33.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.62 23.15 33.17 26.07 8.70 3.93 14 E2a_E3a KnownJunction 0 0.00 0.00 37.20 24.17 11.46 0.00 0.00 26.70 20.98 26.03 0.00 0.00 7.30 0.00 0.00 4.02 0.00 14.18 12.80 26.78 10.63 5.20 12.21 15 I2 Intron 0 3.37 7.87 17.05 11.56 7.92 21.72 8.44 17.01 14.67 24.08 0.00 0.00 0.00 0.00 0.47 0.00 0.00 27.39 11.60 20.33 27.07 5.22 10.70 16 I2_AR1 ActiveIntronRegion 0 3.40 7.94 17.20 11.66 7.99 21.91 8.52 17.16 14.80 24.30 0.00 0.00 0.00 0.00 0.47 0.00 0.00 27.63 11.71 20.51 27.32 5.27 10.78 17 E3_Aa NovelBoundary 0 0.00 6.05 41.22 46.45 19.35 37.36 10.51 48.10 28.50 42.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.71 35.30 43.21 51.71 8.94 23.47 18 ER3a ExonRegion 0 5.06 5.05 59.76 44.07 7.07 7.19 9.48 41.36 28.75 42.75 0.00 0.00 1.35 0.00 4.54 2.29 1.94 51.57 21.78 37.30 22.97 7.86 17.35 19 E3_Da NovelBoundary 0 10.22 19.54 42.22 35.49 8.23 8.63 4.11 69.74 34.46 67.37 0.00 0.00 0.00 2.47 0.00 0.00 0.00 65.41 56.47 59.70 51.65 13.78 41.49 20 E3a_E4a KnownJunction 0 7.56 12.56 31.84 19.21 3.65 4.54 8.21 33.52 17.30 45.83 0.00 0.00 8.28 0.00 4.45 3.67 0.00 26.86 11.58 29.27 13.96 0.00 0.00 21 I3 Intron 0 9.41 12.91 30.53 33.52 17.55 47.73 18.21 40.87 21.04 40.87 0.00 0.00 0.82 0.28 0.00 0.00 0.00 61.23 26.29 31.97 38.70 10.58 18.64 22 I3_AR1 ActiveIntronRegion 0 9.48 13.02 30.78 33.80 17.70 48.13 18.36 41.19 21.22 41.21 0.00 0.00 0.82 0.29 0.00 0.00 0.00 61.74 26.51 32.23 39.02 10.66 18.80 23 E4_Aa NovelBoundary 0 24.08 18.29 28.74 36.69 8.06 33.50 15.85 55.53 25.81 28.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.38 30.87 32.34 37.19 14.76 15.79 24 ER4a ExonRegion 0 4.12 6.41 58.72 33.16 3.91 17.96 9.74 51.14 39.02 74.17 0.00 2.66 3.13 0.00 0.60 0.00 0.00 44.73 49.74 43.48 28.70 15.87 8.13 25 E4a_E5a KnownJunction 0 6.37 8.95 107.30 76.45 24.96 51.05 12.01 78.37 54.89 109.46 0.00 6.30 0.00 0.00 0.00 0.00 0.00 110.93 78.87 73.89 50.35 31.84 15.45 26 E5_Aa NovelBoundary 0 0.00 13.35 6.53 6.29 0.00 19.42 5.52 17.33 2.89 18.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.23 26.07 21.41 5.93 0.00 0.00 27 ER5a ExonRegion 0 11.55 18.36 114.04 81.16 24.73 34.52 16.33 107.65 61.10 109.63 0.00 0.73 0.00 0.00 5.04 2.28 1.57 89.52 59.60 71.41 52.66 16.49 26.54 28 E5_Da NovelBoundary 0 0.00 5.92 16.62 14.98 0.00 0.00 5.87 9.28 9.52 15.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.63 4.80 17.64 16.93 5.45 3.93 29 E5a_E6a KnownJunction 0 12.89 39.27 146.62 101.22 62.14 37.08 22.83 129.96 69.68 104.17 0.00 0.00 0.00 0.00 0.00 7.95 0.00 109.44 62.59 43.21 75.18 7.90 36.36 30 I5 Intron 0 1.11 3.21 4.80 3.20 7.03 3.86 3.48 0.00 0.97 4.49 0.00 0.00 0.00 0.70 0.00 0.00 0.00 23.68 15.07 5.59 6.95 2.19 3.09 31 I5_SR1 SilentIntronRegion 0 1.14 3.25 4.90 3.27 7.18 3.94 3.55 0.00 0.99 4.59 0.00 0.00 0.00 0.72 0.00 0.00 0.00 24.16 15.36 5.71 7.10 2.24 3.15 32 E6_Aa NovelBoundary 0 0.00 12.10 15.29 19.24 3.65 4.66 8.35 8.67 13.11 11.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61.64 20.89 24.48 10.81 0.00 3.33 33 ER6a ExonRegion 0 15.58 19.48 113.02 75.96 27.13 38.77 15.14 113.48 56.80 94.66 0.00 0.00 0.00 0.00 1.63 5.67 0.00 82.08 40.96 73.64 68.31 9.02 29.60 34 E6_Da NovelBoundary 0 6.96 9.21 34.36 31.26 8.23 5.22 12.01 25.18 38.19 26.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 96.88 38.50 32.21 23.04 24.25 12.46 35 E6a_E7a KnownJunction 0 13.41 6.51 86.37 69.75 15.70 62.07 17.44 116.73 62.70 109.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.17 33.79 71.46 37.68 16.96 36.02 36 I6 Intron 0 1.73 8.30 13.41 9.94 1.09 9.73 5.94 8.41 17.27 13.95 0.00 0.00 0.00 0.55 0.00 0.00 0.00 42.32 14.30 19.10 34.15 2.55 9.59 37 I6_SR1 SilentIntronRegion 0 1.76 8.42 13.63 10.11 1.11 9.88 6.04 8.54 17.55 14.17 0.00 0.00 0.00 0.55 0.00 0.00 0.00 42.98 14.53 19.39 34.70 2.59 9.69 38 E7_Aa NovelBoundary 0 0.00 0.00 26.85 35.29 19.35 7.38 15.77 35.94 17.36 30.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.96 26.64 29.34 26.69 11.70 24.24 39 ER7a ExonRegion 0 14.76 33.36 145.04 108.39 36.41 68.46 39.59 136.01 79.59 125.86 0.60 1.12 1.21 0.42 0.07 3.30 1.94 120.21 74.05 92.42 66.44 12.42 32.56 40 E7_Da NovelBoundary 0 3.11 2.70 21.26 26.57 19.52 0.00 20.09 40.42 12.59 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.86 0.00 20.45 23.48 2.51 8.19 41 E7a_E8a KnownJunction 0 16.45 45.65 167.06 88.20 47.96 101.31 46.55 110.24 79.60 136.67 0.00 0.00 0.00 0.00 0.00 4.36 3.46 101.56 48.75 83.60 69.50 16.35 12.80 42 E8_Aa NovelBoundary 0 9.85 12.96 14.07 27.87 10.95 18.46 8.04 35.69 22.89 16.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.15 25.88 18.34 8.65 3.12 0.00 43 ER8a ExonRegion 0 16.65 44.62 166.72 79.01 44.01 72.15 27.90 104.56 61.79 108.05 0.00 0.06 0.00 0.00 1.39 1.02 0.30 105.13 59.86 66.78 56.51 13.25 18.45 44 E8_Da NovelBoundary 0 0.00 16.84 37.37 24.61 15.20 32.77 27.03 38.03 16.67 35.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.14 9.22 18.15 31.26 5.82 7.60 45 E8a_E9a KnownJunction 0 34.60 54.79 222.02 133.48 58.40 26.46 24.95 121.78 55.03 107.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 130.74 39.06 54.01 30.39 14.14 11.44 46 E9_Aa NovelBoundary 0 6.82 9.60 42.78 32.46 34.63 31.46 17.18 44.73 33.94 47.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.03 28.42 18.09 36.33 17.51 13.06 47 ER9a ExonRegion 0 18.55 35.03 172.09 132.85 27.57 50.48 21.80 139.69 91.02 129.15 0.02 3.13 1.53 1.06 1.91 2.25 5.02 142.90 91.56 81.66 69.70 18.35 33.82 48 E9_Da NovelBoundary 0 6.59 16.44 113.80 78.41 22.41 42.76 29.37 107.49 78.65 60.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 139.57 87.44 39.95 32.74 18.92 19.72 49 E9a_E10a KnownJunction 0 3.41 19.14 111.47 96.89 32.00 59.28 31.62 94.02 37.38 79.54 0.00 6.30 8.28 0.00 8.90 0.00 0.00 50.32 58.73 41.16 37.68 2.57 0.00 50 E9a_E10b KnownJunction 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 I9 Intron 0 31.56 25.46 39.17 39.64 32.76 25.66 22.79 27.27 24.40 23.60 19.75 6.12 3.71 36.18 21.90 25.45 12.77 52.95 27.56 37.80 27.58 7.86 14.60 52 I9_SR1 SilentIntronRegion 0 10.50 11.21 13.09 17.91 28.77 25.25 18.61 16.33 8.63 10.84 0.00 0.00 0.00 0.37 1.13 0.00 0.00 14.68 30.73 15.24 11.54 5.72 9.71 53 I9_AR1 ActiveIntronRegion 0 42.35 32.78 52.53 50.80 34.95 25.99 25.02 32.93 32.48 30.17 29.81 9.24 5.60 54.42 32.48 38.40 19.27 72.51 26.12 49.37 35.81 8.98 17.14 54 E10_Aa NovelBoundary 0 26.97 22.63 112.68 68.89 29.80 41.23 30.38 105.97 58.19 56.97 47.17 12.60 0.00 53.33 25.71 58.70 22.44 99.16 27.11 80.60 44.54 2.39 10.84 55 ER10a ExonRegion 0 32.82 47.04 158.89 118.13 40.69 58.12 43.40 130.30 81.60 126.23 25.65 9.09 7.36 57.23 38.63 36.72 23.59 152.25 53.54 107.92 61.16 19.55 28.08 56 E10_Ab KnownBoundary 0 66.46 44.27 232.40 155.06 69.10 63.77 56.84 180.60 111.54 135.44 28.74 0.00 0.00 54.33 43.76 52.55 26.65 233.80 81.79 117.42 46.15 24.31 46.52 57 ER10b ExonRegion 0 54.08 37.77 201.85 140.22 63.79 58.45 31.36 174.02 102.54 133.33 28.48 4.18 3.23 33.75 23.04 28.76 17.00 143.78 75.06 124.19 50.96 21.67 32.47 58 E10_Da NovelBoundary 0 35.71 12.10 43.70 31.46 16.72 40.89 10.64 41.20 14.21 43.01 20.22 0.00 6.01 67.10 23.24 60.33 25.53 76.19 25.32 29.27 16.93 20.39 17.16 59 E10a_E11a KnownJunction 0 45.93 52.75 203.90 152.89 79.03 66.38 18.59 189.23 109.03 147.90 0.00 0.00 7.95 0.00 0.00 0.00 0.00 87.05 37.18 118.25 23.10 17.70 32.86 60 I10 Intron 0 22.12 16.20 40.83 23.89 18.38 21.44 17.22 31.43 14.93 23.61 24.58 9.49 4.29 52.27 16.88 23.89 20.50 54.91 23.51 27.36 22.37 11.11 16.53 61 I10_AR1 ActiveIntronRegion 0 22.18 16.25 40.94 23.96 18.43 21.50 17.27 31.51 14.97 23.67 24.65 9.52 4.31 52.42 16.93 23.95 20.56 55.07 23.57 27.44 22.44 11.15 16.57 62 E11_Aa NovelBoundary 0 32.30 30.59 64.10 63.23 31.41 18.28 19.70 56.85 21.70 51.87 47.01 6.00 0.00 47.44 18.79 36.74 35.72 82.37 21.74 68.58 25.88 12.31 18.44 63 ER11a ExonRegion 0 33.60 45.70 157.00 157.37 42.95 50.43 35.83 133.72 73.31 109.49 17.52 7.36 6.10 31.78 10.96 17.37 11.46 105.68 46.40 92.43 49.51 19.10 22.82 64 IG32 Intergenic 0 6.54 3.77 1.13 1.88 3.72 3.68 4.71 1.59 0.85 3.70 16.44 8.07 7.16 28.51 9.26 9.19 9.69 10.08 4.43 3.95 0.00 1.61 0.45 65 IG32_SR1 SilentIntergenicRegion 0 7.47 4.31 1.29 2.15 4.25 4.21 5.37 1.82 0.97 4.22 18.73 9.21 8.10 32.42 10.57 10.49 11.03 11.51 5.03 4.50 0.00 1.84 0.52