Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C12orf5 Gene 0 20.42 8.59 10.09 12.31 20.61 8.86 26.27 10.56 8.64 4.29 59.05 70.80 54.96 54.61 69.76 70.54 47.58 15.46 17.33 17.80 30.98 27.13 27.08 2 179259 Transcript 1 21.93 7.37 14.90 12.54 31.60 15.36 31.85 14.86 9.83 4.35 193.49 154.62 80.32 150.48 160.57 185.56 126.33 34.01 30.89 21.69 74.17 44.61 65.54 3 ER1a ExonRegion 1 20.76 7.60 3.23 1.34 27.14 16.44 38.54 1.88 4.27 4.65 168.48 0.74 17.79 75.24 111.01 209.47 116.33 23.30 21.21 16.14 71.97 33.04 59.79 4 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 2.12 0.00 25.21 7.95 0.00 0.00 3.20 0.00 0.00 7.26 5 E1a_E2a KnownJunction 1 15.11 6.71 1.54 6.16 36.16 8.69 38.51 5.05 9.87 0.00 146.25 6.60 25.97 105.77 90.61 154.75 110.80 31.13 45.46 23.71 68.20 26.88 80.50 6 I1 Intron 0 1.99 0.93 1.52 1.75 2.02 0.49 6.13 1.53 1.69 0.74 3.02 8.35 15.19 2.64 5.28 13.29 6.93 3.81 2.83 4.07 2.02 0.62 4.67 7 I1_SR1 SilentIntronRegion 0 1.88 0.92 1.49 1.67 2.33 0.40 6.30 1.57 1.54 0.53 2.83 8.30 15.23 2.43 5.04 12.70 6.55 3.54 2.83 4.08 1.91 0.50 4.56 8 I1_AR1 ActiveIntronRegion 0 2.75 1.02 1.80 2.30 0.00 1.13 5.07 1.27 2.67 2.11 4.33 8.76 15.09 4.07 6.98 17.29 9.60 5.68 2.89 4.03 2.72 1.42 5.40 9 I1_AR1 ActiveIntronRegion 0 2.55 0.33 3.17 4.24 2.32 1.12 7.50 3.97 1.29 0.57 2.64 8.62 17.26 2.66 6.03 11.44 6.87 1.81 2.85 4.89 2.02 1.05 4.60 10 ER2a ExonRegion 0 12.42 2.35 2.06 6.24 17.74 4.83 16.34 6.28 8.58 3.41 105.65 44.32 50.85 46.50 51.61 75.40 67.76 13.91 18.19 15.06 40.88 11.19 39.34 11 E2a_E3a KnownJunction 0 17.41 0.00 1.60 5.09 8.15 4.88 15.06 10.64 3.41 5.96 97.18 96.78 116.55 43.85 56.86 36.14 60.87 2.57 8.38 8.63 31.82 5.20 11.87 12 I2_AR2 ActiveIntronRegion 0 3.75 0.00 1.21 1.80 2.37 1.63 4.11 1.14 2.04 1.52 1.71 6.21 16.64 2.10 8.25 16.48 8.05 4.88 3.53 2.36 7.32 0.00 9.77 13 I2_AR3 ActiveIntronRegion 0 1.49 0.00 0.76 4.20 4.79 1.60 1.68 0.00 0.74 0.00 1.45 3.49 18.17 1.89 7.56 7.93 4.34 1.27 0.00 2.37 2.22 0.00 2.57 14 E3_Aa NovelBoundary 0 10.52 0.00 0.00 5.33 8.49 0.00 0.00 7.48 1.07 1.58 2.32 6.00 0.00 0.00 0.00 3.93 4.77 2.11 0.00 0.00 0.00 2.57 0.00 15 ER3a ExonRegion 0 15.47 0.18 19.70 11.08 16.56 2.15 12.65 17.79 16.40 6.85 380.05 251.39 115.17 152.73 187.82 337.92 226.33 46.66 34.41 26.79 122.02 55.74 79.48 16 E3_Da NovelBoundary 1 3.41 0.00 0.00 5.86 0.00 0.00 4.02 2.55 0.00 1.24 2.68 6.30 6.66 7.42 14.34 31.96 0.00 3.94 0.00 2.75 0.00 3.12 12.21 17 E3a_E4a KnownJunction 0 9.85 2.76 29.72 19.64 35.23 9.77 6.32 20.00 13.11 2.20 217.05 184.71 109.25 273.18 306.45 383.23 130.81 65.99 56.19 46.98 81.73 63.74 145.03 18 E3a_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 6.82 4.59 0.00 15.21 0.00 2.57 0.00 0.00 5.87 2.76 0.00 19 ER4a ExonRegion 0 14.19 12.91 21.41 17.46 40.86 21.21 37.95 21.87 8.58 4.16 213.66 198.38 115.63 195.85 187.58 195.74 152.10 48.68 28.46 21.58 81.48 49.36 86.97 20 E4_Da NovelBoundary 0 0.00 0.00 0.00 5.63 0.00 5.74 12.98 8.13 1.65 0.00 15.64 12.60 22.56 14.01 9.39 16.92 4.02 1.62 0.00 8.88 6.18 21.00 3.93 21 E4a_E5a KnownJunction 0 20.89 16.71 12.89 14.38 54.84 34.13 77.68 19.26 6.54 6.07 235.85 229.57 94.64 191.01 241.55 149.79 181.11 23.79 35.95 18.02 82.04 48.74 59.84 22 I4 Intron 0 5.04 0.16 2.03 2.90 4.04 3.06 9.89 4.50 1.17 0.68 13.98 32.05 20.10 13.93 16.08 15.35 12.32 3.07 2.78 1.18 2.98 9.60 6.77 23 I4_SR1 SilentIntronRegion 0 4.85 0.17 2.16 3.01 4.36 3.30 10.22 4.82 1.26 0.73 14.37 33.78 21.27 14.47 16.38 15.96 12.80 3.21 2.76 1.14 2.82 9.78 7.10 24 I4_AR1 ActiveIntronRegion 0 7.68 0.00 0.43 1.69 0.00 0.00 5.99 0.64 0.00 0.00 9.45 11.11 5.81 7.66 12.87 8.14 6.60 1.41 3.25 1.76 5.08 7.61 2.68 25 E5_Aa NovelBoundary 0 13.34 0.00 3.13 3.10 14.69 2.61 12.06 2.55 0.00 0.00 17.21 25.36 15.75 21.37 22.13 18.37 12.25 2.57 0.00 2.56 16.00 3.00 19.55 26 ER5a ExonRegion 1 35.35 14.91 32.48 25.13 36.76 22.68 41.26 24.56 10.96 5.96 233.71 346.05 75.76 212.77 203.24 165.72 182.50 34.27 43.16 21.41 114.85 68.06 54.66 27 E5a_E6a KnownJunction 0 59.42 8.35 29.69 19.15 53.99 35.66 40.01 25.79 17.85 4.35 282.33 278.34 108.27 309.20 265.28 271.30 120.34 69.48 31.81 22.63 93.65 102.93 78.70 28 ER6a ExonRegion 0 20.39 8.63 9.64 12.28 20.16 8.56 26.02 10.28 8.55 4.23 48.17 63.88 53.66 49.13 64.31 61.71 40.71 14.26 16.52 17.61 27.21 25.86 24.73