Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DERA Gene 0 57.72 35.79 93.80 64.18 152.38 348.12 136.20 97.25 114.05 79.12 126.77 119.07 95.48 162.20 102.53 101.71 109.99 40.27 34.76 55.94 56.99 98.49 44.54 2 437671 Transcript 0 3.55 0.59 2.08 4.17 16.15 30.27 10.34 7.17 13.41 7.48 9.23 7.19 17.34 5.94 2.04 9.67 4.32 1.19 2.86 7.05 2.66 14.00 3.01 3 428559 Transcript 0 3.93 1.65 4.99 1.65 9.22 21.50 8.91 4.03 4.56 2.61 1.71 11.88 6.57 3.70 2.82 1.10 0.03 0.46 0.39 0.65 0.42 0.52 1.29 4 25429 Transcript 0 2.42 0.87 1.46 0.91 4.59 15.02 6.94 0.99 2.47 0.82 2.85 0.21 0.22 2.47 2.07 5.24 2.04 3.08 1.37 2.94 1.78 1.79 3.36 5 IG49_SR2 SilentIntergenicRegion 0 3.33 29.88 10.93 43.55 19.17 12.67 11.09 10.76 18.71 28.81 1.52 11.44 14.81 0.63 3.69 1.34 0.74 1.45 4.52 19.29 0.00 17.31 4.54 6 IG49_SR3 SilentIntergenicRegion 0 0.00 17.71 13.43 10.59 10.70 7.03 9.18 5.98 7.51 7.86 2.74 9.29 0.00 2.50 4.17 0.56 0.00 1.46 2.19 9.71 1.29 10.03 0.00 7 IG49_AR3 ActiveIntergenicRegion 0 5.34 20.02 14.47 38.56 20.54 6.70 5.66 13.10 15.51 27.16 0.96 9.73 6.33 1.94 2.38 2.15 0.35 5.14 7.57 14.33 2.21 10.06 4.92 8 ER1a ExonRegion 0 0.00 0.00 0.00 1.23 0.00 0.00 0.44 0.00 0.00 0.00 5.37 0.00 0.00 1.86 2.58 12.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 16.75 10.71 7.73 3.63 38.88 255.57 71.06 4.89 11.52 4.13 25.45 0.72 3.76 19.54 23.87 30.05 26.04 15.25 5.39 21.80 15.07 14.30 19.99 11 E1a_E4b KnownJunction 1 71.79 31.64 29.48 23.87 102.29 254.17 121.93 25.14 52.46 20.23 46.49 6.30 0.00 49.15 62.67 103.22 28.89 59.53 36.24 41.99 40.22 43.72 82.20 12 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER4a ExonRegion 0 7.26 2.61 4.38 2.73 13.76 45.06 20.81 2.96 7.41 2.46 8.56 0.62 0.67 7.42 6.22 15.71 6.13 9.24 4.10 8.81 5.35 5.36 10.07 15 ER4b ExonRegion 0 23.72 5.45 33.29 15.81 36.55 105.49 50.64 19.21 47.01 22.63 79.45 20.62 19.53 53.65 23.90 47.37 80.68 34.55 17.37 31.45 46.28 38.88 24.86 16 E4a_E5a KnownJunction 1 32.15 0.00 37.40 8.82 7.56 77.74 31.93 28.71 41.78 34.09 160.46 34.51 19.15 64.51 42.90 41.70 168.68 18.99 20.99 27.80 114.91 66.32 13.06 17 E4a_E6a NovelJunction 0 0.00 5.79 7.42 19.24 8.40 33.96 15.41 1.68 26.13 6.90 0.00 0.00 0.00 2.88 5.19 0.00 8.79 14.30 8.38 22.69 0.00 0.00 4.27 18 ER5a ExonRegion 0 26.26 14.26 49.38 14.28 91.34 219.41 82.83 57.06 62.74 55.30 148.38 100.19 76.53 173.13 91.33 129.67 134.65 30.54 26.34 27.39 80.08 73.68 59.11 19 E5a_E6a KnownJunction 0 36.97 48.54 73.00 31.40 184.55 508.46 300.66 61.36 77.02 63.96 115.82 142.85 85.38 211.55 109.90 160.04 210.47 27.23 21.37 32.02 99.09 71.64 38.24 20 ER6a ExonRegion 0 32.25 35.80 79.82 55.89 117.31 342.27 149.83 69.86 97.61 69.73 158.05 141.79 100.30 212.59 119.07 109.94 145.58 51.47 24.35 71.23 108.12 67.80 42.15 21 E6a_E7a KnownJunction 0 48.23 30.78 118.15 85.60 108.66 518.28 143.97 88.23 148.41 104.28 154.09 109.09 85.22 238.27 155.76 133.47 165.12 69.48 46.02 129.50 110.21 87.75 43.71 22 ER7a ExonRegion 0 53.02 31.03 135.67 82.87 114.11 420.78 114.55 101.58 148.11 111.05 166.40 177.41 122.18 265.30 137.73 160.69 171.23 68.50 43.04 92.06 135.32 110.43 53.71 23 E7a_E8a KnownJunction 0 54.82 33.55 133.44 92.63 134.97 395.11 133.90 107.16 162.85 126.06 207.53 198.81 156.16 278.18 225.11 182.35 166.15 111.80 56.38 113.13 119.29 132.63 69.74 24 E7a_E9a NovelJunction 0 0.00 0.00 1.27 4.79 0.00 35.77 1.68 3.98 1.74 5.83 2.16 0.00 0.00 16.66 4.45 8.37 0.00 7.25 4.42 2.94 5.93 0.00 3.84 25 ER8a ExonRegion 0 65.79 49.63 122.77 72.54 214.27 540.27 200.10 112.62 154.77 106.85 203.09 178.82 175.75 285.47 155.16 160.36 216.96 80.18 60.47 107.57 102.12 121.41 72.14 26 E8a_E9a KnownJunction 0 107.95 64.07 101.56 69.95 242.95 500.79 196.21 129.84 173.67 120.85 202.00 155.60 134.41 248.69 151.68 157.22 129.97 64.92 93.56 90.83 62.33 208.99 91.94 27 ER9a ExonRegion 0 104.68 72.79 115.11 72.80 231.89 600.22 254.56 121.74 158.68 117.61 221.63 201.76 191.67 300.55 155.23 191.58 203.28 78.03 76.51 96.23 94.14 174.43 90.62 28 E9_Da KnownBoundary 1 9.04 9.14 5.62 9.99 15.62 81.43 34.67 11.09 47.60 22.08 14.00 36.91 68.99 17.13 9.64 15.12 9.44 6.18 11.20 20.20 8.90 25.96 15.96 29 E9a_E10a KnownJunction 0 149.95 43.22 115.87 59.23 254.58 586.37 241.08 118.38 131.57 113.44 207.42 179.01 181.81 233.15 125.10 180.98 171.39 56.34 35.30 103.29 86.30 103.06 96.72 30 ER9b ExonRegion 1 7.10 1.17 4.16 7.12 32.30 60.53 20.23 14.33 26.81 14.97 13.10 14.39 34.68 10.02 1.49 6.45 8.64 2.39 5.73 14.10 5.32 27.99 6.02 31 E9_Db NovelBoundary 1 3.48 6.05 8.19 17.01 25.98 39.64 35.24 18.94 62.15 11.68 13.79 31.36 52.11 4.77 0.00 19.74 3.74 5.97 8.75 30.74 8.40 33.49 4.18 32 I9 Intron 0 17.65 7.08 12.78 17.77 38.37 67.23 33.01 19.18 37.47 14.89 17.85 22.22 21.96 16.79 5.61 16.13 13.92 9.18 4.84 17.55 7.75 19.61 7.45 33 I9_AR1 ActiveIntronRegion 0 6.37 5.23 8.05 7.11 25.83 47.80 24.98 14.79 34.11 14.21 18.05 18.53 39.07 17.68 5.42 16.60 17.05 8.18 4.33 18.04 5.58 15.19 7.97 34 I9_SR1 SilentIntronRegion 0 8.01 4.02 5.11 10.30 32.57 49.32 24.40 13.34 28.71 11.72 10.06 25.97 18.08 16.23 3.79 9.54 11.06 5.29 4.10 11.90 6.34 18.34 5.85 35 I9_AR2 ActiveIntronRegion 0 14.15 5.04 7.37 12.29 33.92 58.97 31.97 18.10 34.77 13.10 15.59 23.41 22.06 14.61 5.01 16.27 12.17 8.37 5.32 15.57 7.11 20.05 6.94 36 I9_SR2 SilentIntronRegion 0 16.98 5.26 17.96 23.13 32.56 71.19 38.39 25.34 44.31 17.70 21.02 22.75 20.86 13.63 3.49 13.85 7.69 5.97 2.47 22.04 6.85 18.88 6.08 37 I9_AR3 ActiveIntronRegion 0 23.29 7.66 16.39 29.18 41.91 77.32 35.68 17.85 47.49 19.27 25.61 19.50 19.32 20.17 7.66 22.34 17.59 17.63 4.56 23.62 12.73 28.37 8.99 38 I9_SR3 SilentIntronRegion 1 35.10 10.00 37.45 35.82 55.47 123.80 49.21 31.01 59.42 21.98 31.25 24.00 28.03 22.20 5.12 27.67 21.33 17.08 7.90 26.28 12.19 29.66 9.34 39 I9_AR4 ActiveIntronRegion 0 28.26 14.24 22.18 32.74 46.80 91.80 41.44 25.80 41.25 16.84 21.58 18.02 18.62 21.09 7.05 21.69 15.10 12.80 7.24 22.51 10.63 17.25 10.66 40 I9_SR4 SilentIntronRegion 1 58.22 15.81 24.80 30.44 52.77 77.17 42.68 29.27 52.57 26.39 25.54 21.36 20.01 16.39 9.52 10.30 22.05 10.20 2.21 23.55 5.00 22.97 3.64 41 I9_AR5 ActiveIntronRegion 0 20.35 10.27 9.65 13.37 60.70 63.77 29.71 12.85 26.41 10.36 15.09 19.99 8.26 14.05 11.05 9.28 15.18 5.49 1.20 10.50 5.55 12.50 7.22 42 E10_Aa NovelBoundary 0 58.83 19.73 26.49 37.29 68.85 119.14 69.42 36.51 57.49 20.95 25.11 6.15 27.43 11.77 22.62 7.35 21.04 20.40 9.60 15.21 10.07 20.27 15.96 43 ER10a ExonRegion 0 125.14 66.05 150.60 94.58 269.93 610.79 234.03 137.95 167.68 118.83 211.76 233.96 159.18 303.45 167.40 183.80 205.12 86.34 71.37 94.40 118.85 166.46 79.88 44 E10_Da NovelBoundary 0 72.24 24.14 36.90 47.15 87.27 69.56 59.22 24.32 51.42 14.40 9.90 17.86 0.00 19.42 13.35 7.69 31.42 17.66 4.05 19.88 14.46 8.45 7.85 45 E10a_E11a KnownJunction 0 95.72 57.82 164.93 76.65 313.75 623.73 229.73 122.03 160.53 97.19 185.20 104.28 103.40 247.51 95.19 173.97 168.86 55.96 93.84 79.32 83.58 161.04 52.33 46 I10 Intron 0 28.84 12.60 24.13 28.10 41.41 83.29 32.53 25.52 31.54 10.59 12.37 12.57 8.15 6.45 5.67 6.75 5.45 7.97 2.63 18.01 8.65 16.78 4.24 47 I10_AR1 ActiveIntronRegion 0 29.08 12.70 24.33 28.33 41.75 83.97 32.79 25.73 31.80 10.67 12.47 12.67 8.21 6.50 5.72 6.81 5.50 8.04 2.65 18.15 8.72 16.91 4.27 48 E11_Aa NovelBoundary 0 33.78 16.64 38.08 61.43 77.84 70.02 54.85 49.17 49.88 30.17 5.00 26.41 6.82 9.59 19.78 3.33 0.00 7.63 4.71 14.70 0.00 19.72 4.35 49 ER11a ExonRegion 0 88.73 55.00 155.07 119.99 248.23 444.37 190.33 179.76 185.69 125.08 150.61 156.41 122.85 179.08 144.71 108.51 103.39 35.36 42.15 64.22 34.66 150.97 47.68 50 E11_Da KnownBoundary 0 42.90 7.50 34.18 6.96 82.34 180.18 108.46 26.25 17.42 15.58 23.95 40.21 42.37 28.96 18.17 19.48 0.00 4.77 10.73 7.22 2.35 23.45 19.72 51 ER11b ExonRegion 0 3.93 1.65 4.99 1.65 9.22 21.50 8.91 4.03 4.56 2.61 1.71 11.88 6.57 3.70 2.82 1.10 0.03 0.46 0.39 0.65 0.42 0.52 1.29