Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DYRK4 Gene 0 88.82 21.94 59.25 44.09 77.08 11.39 33.67 28.16 24.15 52.00 98.66 55.17 58.94 70.49 81.53 80.03 66.24 11.47 46.78 35.76 43.39 36.66 40.75 2 10132 Transcript 0 74.19 20.84 44.40 41.71 63.31 12.67 29.51 24.88 25.13 43.85 80.44 42.17 41.83 53.08 55.91 75.86 57.84 11.86 42.98 29.62 30.71 25.40 41.17 3 IG41_AR1 ActiveIntergenicRegion 0 2.55 10.24 3.11 2.56 5.50 1.70 8.48 7.42 4.14 4.24 7.33 10.14 7.53 1.71 3.20 7.85 4.06 10.41 0.42 28.81 0.00 0.28 0.00 4 IG41_SR1 SilentIntergenicRegion 0 0.92 10.29 2.84 7.23 3.22 0.84 7.29 10.14 4.17 6.86 5.80 4.71 2.12 4.33 3.97 5.78 6.40 24.10 1.89 30.20 0.18 0.02 0.00 5 IG41_SR2 SilentIntergenicRegion 0 0.51 14.96 1.65 2.51 1.91 2.03 4.89 4.79 2.12 4.75 4.25 2.27 1.92 5.85 0.87 3.86 3.10 21.69 0.63 19.12 0.00 0.00 0.00 6 IG41_AR3 ActiveIntergenicRegion 0 0.39 11.28 3.62 5.13 4.87 1.82 7.51 4.77 2.78 4.70 8.47 4.42 3.75 7.62 1.58 4.38 7.17 15.92 0.88 29.17 0.00 0.00 0.00 7 IG41_SR4 SilentIntergenicRegion 0 1.08 10.79 2.36 7.23 10.42 2.07 12.29 6.45 4.74 6.39 9.48 5.95 3.70 5.05 3.14 4.22 4.82 17.86 1.30 21.72 0.11 0.11 0.00 8 IG41_AR5 ActiveIntergenicRegion 0 13.24 11.26 3.69 17.01 11.98 1.51 8.24 5.73 8.35 6.56 6.43 0.00 0.00 6.79 7.66 6.96 7.59 33.07 0.00 19.34 0.00 0.00 0.00 9 IG41_SR5 SilentIntergenicRegion 0 2.07 13.02 3.70 8.88 10.93 2.59 8.41 5.60 4.98 4.56 10.50 1.32 0.50 3.51 2.61 4.73 8.07 27.59 1.24 15.34 0.29 0.00 0.00 10 IG41_AR6 ActiveIntergenicRegion 0 4.47 10.40 2.89 8.24 8.85 7.74 10.68 6.68 6.07 6.14 8.37 1.28 1.33 5.95 7.24 4.06 4.20 36.86 2.53 17.62 0.43 0.00 0.00 11 IG41_SR6 SilentIntergenicRegion 0 3.04 17.95 4.55 8.69 13.88 4.45 12.59 7.66 3.58 5.90 7.32 6.23 4.03 8.27 5.82 4.60 7.54 25.62 0.96 18.04 0.11 0.21 0.00 12 IG41_AR7 ActiveIntergenicRegion 0 3.32 34.71 5.79 14.45 21.11 7.33 16.91 11.91 6.09 11.65 11.77 5.58 3.82 5.76 8.54 3.95 6.09 12.27 0.38 20.22 0.00 0.25 0.00 13 IG41_SR7 SilentIntergenicRegion 0 7.04 26.63 10.86 15.86 19.84 5.21 14.53 11.91 7.23 9.02 10.77 6.83 4.01 5.94 8.11 5.96 4.65 29.20 1.68 25.20 0.12 0.33 0.00 14 ER1a ExonRegion 0 6.09 0.00 0.00 1.02 10.15 9.38 1.31 1.17 7.41 3.57 5.05 3.90 4.96 5.73 3.48 11.18 1.47 4.25 0.00 12.59 0.00 3.51 1.07 15 E1_Da NovelBoundary 0 17.04 3.16 0.00 1.96 3.90 6.98 6.49 1.97 20.02 4.78 17.64 0.00 0.00 4.47 4.45 4.10 0.00 4.23 0.00 21.03 0.00 0.00 0.00 16 E1a_E2a KnownJunction 0 3.78 0.00 0.00 3.26 19.61 9.71 2.16 1.68 6.92 9.24 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.71 17 I1 Intron 0 8.11 4.18 1.04 5.33 4.74 3.25 2.91 3.29 14.10 2.79 7.68 0.00 3.54 6.33 3.76 5.69 3.04 4.17 0.45 15.09 0.00 0.00 0.42 18 I1_SR1 SilentIntronRegion 0 10.08 7.92 0.00 6.69 3.18 4.82 4.46 1.62 16.53 4.80 9.53 0.00 4.02 8.20 4.11 1.74 5.00 3.42 0.80 14.56 0.00 0.00 0.00 19 I1_AR2 ActiveIntronRegion 0 7.78 3.47 1.85 5.79 5.98 3.28 2.97 4.59 14.55 2.46 6.60 0.00 3.43 5.24 4.27 8.93 2.51 4.78 0.40 15.42 0.00 0.00 0.75 20 E2_Aa NovelBoundary 0 20.82 0.00 0.00 4.06 0.00 0.00 5.96 0.00 16.32 3.41 12.37 0.00 6.49 9.83 0.00 8.29 0.00 4.68 0.00 6.07 0.00 0.00 0.00 21 ER2a ExonRegion 0 21.20 4.87 0.00 3.54 18.04 5.30 8.83 5.02 13.31 6.38 9.55 7.44 3.07 7.26 6.93 6.41 2.71 2.61 0.00 10.10 0.00 1.00 1.23 22 E2a_E3a KnownJunction 0 8.82 16.77 0.00 4.36 4.24 0.00 8.52 4.31 18.08 5.51 2.68 6.30 0.00 9.42 0.00 13.07 9.35 6.76 0.00 16.75 0.00 5.39 0.00 23 E3_Aa NovelBoundary 0 6.37 18.81 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 4.85 0.00 2.94 0.00 0.00 0.00 24 ER3a ExonRegion 0 13.15 6.08 1.14 6.34 10.56 7.76 3.17 5.93 15.66 4.88 8.51 4.83 2.40 12.52 6.35 7.48 2.78 5.27 0.00 17.93 0.00 0.44 0.00 25 E3a_E4a KnownJunction 0 27.26 6.71 0.00 7.89 12.31 7.27 6.76 6.28 20.25 6.61 9.63 0.00 0.00 7.24 4.45 4.10 0.00 8.42 0.00 25.44 0.00 0.00 0.00 26 ER4a ExonRegion 0 23.36 5.37 2.63 12.11 15.68 4.43 9.21 6.54 20.06 7.07 8.85 3.60 0.65 10.88 8.47 4.53 3.64 4.41 0.00 14.21 0.00 1.43 0.00 27 E4a_E5a KnownJunction 0 38.01 6.25 0.00 6.96 8.66 5.79 11.53 8.09 14.73 1.61 11.27 0.00 13.15 2.47 4.94 0.00 0.00 0.00 0.00 8.12 0.00 2.39 0.00 28 ER5a ExonRegion 0 27.33 12.46 3.66 11.85 21.63 8.41 6.64 8.10 24.27 7.28 9.50 5.93 12.31 8.92 8.48 7.23 3.84 4.27 0.00 13.52 0.00 2.42 2.08 29 E5a_E6a KnownJunction 0 18.45 8.35 4.38 16.15 18.68 7.33 10.47 8.50 39.90 11.50 10.32 25.96 0.00 7.59 9.89 3.85 9.54 4.52 0.00 3.26 0.00 6.06 0.00 30 ER6a ExonRegion 0 24.44 6.33 2.88 13.16 9.99 7.72 7.27 13.52 26.70 5.99 6.61 5.98 11.88 6.48 13.46 5.94 1.92 2.67 0.00 17.19 0.00 1.48 1.12 31 E6a_E7a KnownJunction 1 26.15 11.38 1.57 13.25 3.90 24.76 9.89 7.48 25.03 5.69 0.00 20.11 0.00 17.66 6.30 3.42 4.02 11.03 0.00 15.92 0.00 0.00 0.00 32 ER7a ExonRegion 0 48.96 9.28 1.18 17.75 15.70 7.69 10.66 12.25 34.16 5.78 8.79 12.88 13.15 14.46 12.98 5.84 2.25 11.33 0.23 23.27 1.56 0.00 0.18 33 E7a_E8a KnownJunction 0 108.39 25.72 1.77 13.55 12.05 0.00 15.06 12.90 34.06 0.00 6.90 5.70 6.82 19.90 5.44 3.50 3.65 10.82 0.00 12.21 0.00 0.00 0.00 34 ER8a ExonRegion 1 185.08 42.95 57.17 38.92 118.80 18.62 75.29 23.99 30.39 42.44 103.88 16.34 20.39 70.60 72.10 129.74 83.67 23.65 79.89 43.89 51.90 43.61 86.11 35 E8a_E9a KnownJunction 1 39.71 26.84 16.85 35.76 7.81 12.83 9.94 27.56 15.86 42.33 124.45 21.46 7.79 30.73 26.70 37.77 95.47 11.48 26.26 18.66 43.00 6.25 27.57 36 E8a_E10a NovelJunction 0 13.11 6.18 74.15 19.11 8.66 5.56 11.22 13.88 11.26 31.62 40.01 0.00 6.82 34.43 33.99 20.59 31.23 0.00 54.78 12.66 73.52 4.84 35.00 37 I8 Intron 0 6.73 4.35 6.76 5.53 17.71 1.07 9.45 4.85 4.06 10.09 14.42 20.37 14.03 18.54 6.62 19.67 14.35 4.05 6.82 9.67 8.30 9.06 9.34 38 I8_AR1 ActiveIntronRegion 0 6.69 4.73 6.72 6.69 21.68 1.85 12.29 7.72 4.47 13.27 15.88 28.38 17.66 22.01 6.46 24.88 19.80 5.11 6.78 10.40 10.22 10.26 11.94 39 I8_SR2 SilentIntronRegion 0 10.21 4.76 9.52 6.54 19.96 0.39 9.29 2.82 5.48 9.56 18.29 18.21 15.50 20.30 5.35 17.96 13.13 2.08 5.90 11.31 8.63 10.53 9.42 40 E9_Aa NovelBoundary 0 13.48 5.99 3.25 11.05 20.37 0.00 8.44 9.94 5.79 15.82 5.37 18.61 0.00 17.60 15.58 16.66 11.59 2.57 22.78 11.76 2.72 2.69 7.68 41 ER9a ExonRegion 1 37.33 20.74 50.78 54.76 27.94 12.48 14.63 35.87 19.76 63.74 163.76 33.36 36.83 63.21 75.96 112.84 140.42 9.42 62.51 34.39 49.17 47.82 64.99 42 E9a_E10a KnownJunction 1 75.05 21.31 87.84 83.21 53.31 9.60 18.28 48.10 25.12 97.72 251.43 72.92 29.22 130.79 117.19 383.06 216.18 14.84 192.66 71.20 55.04 85.67 223.22 43 I9 Intron 0 15.02 6.54 3.48 13.83 23.45 4.11 10.07 6.06 3.55 15.58 20.28 22.38 21.88 20.77 9.65 18.53 12.45 2.81 6.64 12.23 9.09 7.12 8.66 44 I9_SR1 SilentIntronRegion 0 2.86 2.09 1.26 5.00 5.90 2.71 7.12 3.71 3.53 7.73 9.57 8.53 13.38 19.25 4.01 10.58 14.05 2.98 10.82 3.11 9.72 3.63 6.48 45 I9_AR1 ActiveIntronRegion 0 5.47 5.21 2.13 10.97 18.14 2.45 10.81 6.24 3.32 16.60 23.18 21.79 24.22 22.93 7.82 24.28 16.50 2.01 8.83 10.28 11.86 6.31 9.22 46 I9_SR2 SilentIntronRegion 0 11.21 5.63 4.88 12.51 20.57 4.05 10.74 5.12 3.71 14.66 21.57 20.30 18.63 22.42 8.82 18.92 13.80 4.62 7.42 15.07 10.15 6.60 9.23 47 I9_AR2 ActiveIntronRegion 0 9.81 5.83 0.07 7.44 13.12 2.33 5.45 1.60 2.99 13.54 8.33 25.89 14.61 15.59 4.46 19.66 2.41 2.24 6.25 4.75 3.69 6.97 2.09 48 I9_AR3 ActiveIntronRegion 0 31.23 9.89 3.52 20.42 36.35 6.04 9.59 8.03 3.59 17.79 19.32 28.37 26.65 17.50 13.96 14.71 7.70 1.09 2.95 12.59 5.66 9.27 8.45 49 E10_Aa NovelBoundary 0 72.01 14.34 3.37 42.82 48.30 5.11 16.87 22.47 3.70 30.25 22.69 30.46 5.68 41.73 36.71 29.82 29.64 2.03 0.00 6.07 2.29 6.18 3.59 50 ER10a ExonRegion 0 159.15 40.33 137.05 89.42 233.80 20.72 89.21 61.96 36.93 114.41 257.60 110.90 114.33 163.15 179.19 235.99 150.90 24.48 128.74 70.75 107.08 85.62 136.01 51 E10_Da NovelBoundary 0 3.78 12.50 4.29 5.13 20.88 2.78 7.82 10.06 1.45 1.26 9.05 11.25 26.30 9.18 10.26 3.76 21.32 4.64 0.00 6.14 0.00 12.25 3.41 52 E10a_E11a KnownJunction 0 231.08 74.07 163.63 131.02 279.54 62.52 157.18 60.87 38.71 129.56 228.79 152.90 193.33 169.64 186.66 209.60 129.50 47.55 144.19 56.44 116.39 37.35 138.63 53 I10 Intron 0 24.00 7.60 3.41 8.48 24.71 3.61 9.17 4.37 1.37 9.23 11.29 22.56 20.97 11.66 11.06 12.31 7.29 0.75 3.24 5.78 2.10 5.02 3.09 54 I10_SR1 SilentIntronRegion 0 17.25 6.93 4.03 8.48 21.55 5.24 8.27 5.30 1.33 10.41 13.55 22.63 21.55 12.77 10.86 12.10 7.07 0.98 4.61 7.03 2.20 6.07 2.81 55 I10_AR2 ActiveIntronRegion 0 18.70 4.07 1.23 11.58 13.38 0.00 13.24 5.19 2.47 5.73 3.87 28.86 23.45 8.12 15.96 2.97 6.60 0.00 6.37 2.13 0.00 4.17 5.87 56 I10_SR2 SilentIntronRegion 0 40.92 5.69 1.58 13.77 35.69 0.61 13.54 4.10 0.89 11.39 7.43 39.81 24.80 10.04 21.54 6.33 5.22 0.00 3.06 3.63 0.00 5.71 4.41 57 I10_AR3 ActiveIntronRegion 0 54.98 8.35 4.16 10.07 46.75 4.58 11.95 2.95 0.92 8.87 6.40 26.97 29.52 10.13 11.89 14.29 3.62 0.00 1.22 3.04 1.10 4.77 2.07 58 E11_Aa NovelBoundary 1 116.91 6.05 6.06 25.37 23.51 2.16 9.89 4.03 1.07 15.66 14.69 12.45 65.74 2.12 18.67 39.39 8.70 2.57 15.62 6.01 4.76 7.16 8.45 59 ER11a ExonRegion 0 168.91 64.80 156.28 106.20 166.67 23.09 85.70 80.89 41.70 143.91 270.84 195.32 165.03 194.60 225.33 167.79 179.19 20.40 96.05 77.60 138.78 84.96 93.47 60 E11a_E12a KnownJunction 0 255.23 44.14 197.15 199.91 260.44 16.75 75.78 86.67 48.52 186.80 174.62 141.50 181.16 131.85 140.92 251.47 166.25 29.93 162.73 65.71 63.01 87.63 105.25 61 I11_AR2 ActiveIntronRegion 0 22.81 1.24 0.95 2.04 3.12 0.00 0.96 3.46 3.23 3.44 3.87 12.99 0.00 4.42 2.26 0.00 0.00 0.00 0.00 0.00 4.41 0.00 2.61 62 I11_SR1 SilentIntronRegion 0 23.67 2.03 1.23 1.36 10.70 0.00 0.00 2.51 2.81 3.44 3.16 9.84 0.00 4.87 2.90 0.00 1.20 0.00 0.00 0.00 4.01 0.00 6.14 63 I11_AR3 ActiveIntronRegion 0 17.80 2.03 2.31 1.36 10.70 0.00 0.00 5.19 2.32 5.60 1.14 4.33 14.07 6.69 2.90 0.00 6.02 0.00 0.00 0.00 2.20 0.00 8.81 64 ER12a ExonRegion 0 159.44 24.64 135.20 88.97 126.51 9.34 41.23 44.67 20.55 106.47 177.11 116.18 145.56 135.69 170.75 139.89 123.48 14.58 95.34 52.06 80.32 81.15 57.36