Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ST3GAL4 Gene 0 24.60 23.25 100.67 42.49 17.20 70.61 13.44 24.84 28.99 18.23 42.05 15.23 5.77 30.29 14.69 28.72 7.17 58.32 38.24 29.84 81.32 114.07 112.70 2 239597 Transcript 0 1.46 1.84 1.68 3.04 0.89 2.37 0.30 2.87 1.73 0.88 1.08 1.58 0.00 1.72 0.12 3.05 1.08 4.07 1.07 0.42 2.61 2.47 3.56 3 356132 Transcript 0 0.50 1.02 8.75 1.69 2.69 9.52 0.49 1.00 1.30 2.39 2.34 0.80 0.25 1.67 0.38 1.56 2.82 3.89 0.84 5.59 3.65 6.33 7.87 4 227495 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 444328 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 392669 Transcript 0 3.83 2.64 2.73 1.36 0.00 6.32 1.86 2.72 0.59 1.69 4.36 0.00 0.06 2.07 0.71 1.28 1.10 0.31 2.65 1.73 10.54 5.69 11.28 7 449406 Transcript 0 1.06 1.02 5.60 2.73 0.76 2.49 0.09 1.85 1.94 1.80 3.45 0.31 0.00 2.44 1.87 2.76 0.94 6.34 4.32 0.91 5.98 7.59 11.12 8 ER1a ExonRegion 0 0.94 2.71 0.00 0.00 2.68 0.20 0.59 0.00 0.00 2.17 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.44 3.19 0.00 0.00 2.32 2.94 9 ER1b ExonRegion 0 7.15 11.43 9.45 4.68 7.08 19.90 4.02 2.78 1.90 2.85 5.89 1.47 0.00 9.77 3.48 4.00 1.12 15.11 11.25 4.38 14.29 18.93 42.52 10 E1a_E3a KnownJunction 0 0.00 5.66 18.78 7.03 0.00 0.00 0.00 1.56 1.45 4.00 12.32 0.00 0.00 31.61 0.00 7.60 0.00 11.52 9.32 12.53 24.28 2.57 7.85 11 ER2a ExonRegion 0 0.68 0.00 3.12 1.56 0.00 2.14 0.66 1.00 0.06 0.80 1.59 0.00 0.18 3.66 2.13 0.00 3.30 0.94 0.00 1.06 9.03 8.15 9.90 12 E2a_E3a KnownJunction 0 3.63 0.00 1.66 2.06 0.00 10.90 0.00 1.89 0.00 0.00 2.58 0.00 0.00 2.47 0.00 3.85 0.00 0.00 4.42 0.00 13.28 2.33 4.18 13 I2_AR21 ActiveIntronRegion 0 10.31 1.77 3.57 4.09 2.21 1.83 5.30 0.00 4.73 2.79 0.00 0.00 0.00 1.41 8.33 14.47 0.00 4.82 6.37 14.52 11.02 0.00 2.94 14 ER3a ExonRegion 0 13.20 4.36 47.90 22.58 8.59 30.98 0.99 16.74 11.73 13.88 39.73 5.58 2.35 23.81 13.28 26.44 3.30 46.49 30.26 15.31 78.58 72.54 71.33 15 E3a_E4b KnownJunction 0 23.04 19.67 92.40 56.94 11.63 30.66 0.00 32.98 24.97 26.59 48.06 6.75 0.00 29.02 26.70 47.25 8.42 86.39 55.25 7.86 81.79 106.67 155.28 16 ER4a ExonRegion 0 1.06 1.02 5.60 2.73 0.76 2.49 0.09 1.85 1.94 1.80 3.45 0.31 0.00 2.44 1.87 2.76 0.94 6.34 4.32 0.91 5.98 7.59 11.12 17 ER4b ExonRegion 0 15.64 17.62 107.24 37.84 13.45 52.59 4.49 22.30 33.13 23.50 51.89 13.53 0.00 41.46 16.00 33.19 12.65 112.02 56.41 36.02 94.09 127.01 165.06 18 E4_Da NovelBoundary 0 14.97 2.30 62.65 21.08 3.48 13.51 1.90 7.06 17.77 10.74 22.85 0.00 0.00 29.61 5.07 21.02 3.74 67.53 11.67 23.07 63.63 46.23 115.67 19 E4a_E5a KnownJunction 0 0.00 12.37 17.42 3.63 8.49 19.19 0.00 4.19 3.91 2.63 9.79 12.30 0.00 0.00 4.45 8.12 3.65 9.00 7.34 14.38 20.02 21.74 35.34 20 E4b_E5a KnownJunction 0 30.82 20.79 94.94 37.12 16.72 78.59 12.32 20.58 27.08 19.88 75.49 7.50 0.00 60.10 24.35 53.92 0.00 92.61 82.45 54.14 110.89 166.19 179.52 21 ER4c ExonRegion 1 22.05 13.90 101.50 35.78 13.16 58.99 7.83 17.72 26.14 20.26 63.79 5.77 0.00 57.93 21.28 53.25 2.48 94.85 60.52 50.89 121.75 131.61 203.85 22 ER5a ExonRegion 0 23.44 33.06 147.68 58.15 26.26 109.08 22.61 33.95 41.29 29.44 80.16 33.94 7.70 53.34 18.77 51.41 10.76 70.65 53.52 45.86 150.89 163.59 162.06 23 E5a_E6a KnownJunction 0 0.00 0.00 5.50 0.00 4.24 8.52 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 3.55 2.53 0.00 2.56 0.00 3.00 3.84 24 E5a_E6b KnownJunction 0 28.89 48.68 174.27 71.35 24.45 120.95 20.93 39.55 54.80 35.97 84.23 31.66 13.80 54.51 14.09 60.33 18.05 70.10 38.40 40.40 148.02 171.27 152.54 25 ER6a ExonRegion 0 1.00 2.03 12.00 3.37 1.13 10.52 0.98 2.00 2.60 3.68 4.68 1.60 0.49 3.33 0.76 3.13 2.08 5.25 1.68 8.62 7.31 9.65 11.90 26 ER6b ExonRegion 0 25.90 28.70 149.50 50.01 21.13 106.98 19.03 36.07 51.52 31.45 84.59 32.18 6.82 48.96 24.35 58.49 8.47 127.36 64.20 52.53 157.60 180.60 159.37 27 E6a_E7a KnownJunction 0 29.63 48.87 209.99 71.49 14.69 93.47 25.75 54.38 65.94 44.32 109.34 19.21 8.28 71.16 43.14 66.39 20.66 191.47 115.67 59.19 201.15 248.79 285.88 28 ER7a ExonRegion 0 26.23 32.27 180.27 54.47 15.97 73.50 9.70 42.53 50.05 39.52 90.05 37.26 6.23 58.84 34.77 63.58 20.40 147.49 86.37 47.40 143.89 249.58 257.85 29 E7a_E8a KnownJunction 0 36.08 39.86 182.02 56.40 37.01 85.01 5.83 35.69 37.15 32.05 59.59 23.41 0.00 70.75 39.31 31.44 24.40 73.12 55.44 48.39 116.82 233.18 201.54 30 E7a_E9a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 4.19 4.30 6.22 0.00 0.00 2.84 2.57 7.68 31 ER8a ExonRegion 0 30.65 46.48 161.76 47.22 34.23 124.41 12.04 37.04 33.55 31.60 81.87 13.12 9.33 53.85 21.49 38.64 12.79 89.89 44.73 41.98 143.31 174.78 147.84 32 E8_Da NovelBoundary 0 14.82 0.00 6.24 1.83 0.00 5.56 0.00 5.18 0.00 0.00 0.00 11.10 0.00 0.00 0.00 0.00 0.00 6.14 4.80 6.07 0.00 3.12 3.41 33 E8a_E9a KnownJunction 0 37.27 61.04 183.32 49.88 99.32 162.80 24.47 37.54 46.79 47.92 88.34 54.92 7.14 52.86 31.77 48.71 12.62 125.36 77.37 41.35 146.47 216.46 211.79 34 ER9a ExonRegion 0 47.92 57.16 254.28 105.75 46.45 168.38 29.69 67.56 72.31 40.06 95.75 40.47 9.08 64.78 31.14 66.04 21.59 145.14 100.07 73.28 182.97 263.36 256.35 35 E9a_E10a KnownJunction 0 46.90 57.16 283.25 157.66 32.17 169.62 48.89 57.42 79.02 38.76 95.97 35.86 32.63 33.90 33.62 48.96 13.84 117.69 114.73 68.97 205.78 311.56 289.38 36 ER10a ExonRegion 0 53.31 35.11 227.50 120.38 33.95 151.25 24.36 45.50 61.93 26.14 78.73 32.74 23.12 65.97 22.46 52.84 17.90 100.86 85.96 56.72 139.81 244.80 238.64 37 E10a_E11a KnownJunction 0 40.67 33.42 203.78 118.17 19.02 115.84 25.70 27.68 44.79 22.19 55.96 11.70 26.62 39.14 14.59 31.27 8.51 97.25 77.27 62.83 123.06 178.50 119.85 38 E10a_E13a KnownJunction 0 3.04 2.57 2.60 8.92 0.00 5.34 0.00 7.15 2.55 0.00 2.16 0.00 0.00 4.94 0.00 4.10 0.00 1.87 0.00 0.00 5.75 3.00 0.00 39 E11_Aa NovelBoundary 0 6.08 0.00 5.35 13.52 0.00 0.00 0.00 4.07 0.00 1.42 0.00 0.00 0.00 2.35 0.00 14.01 0.00 2.57 3.67 6.14 19.52 16.53 8.62 40 ER11a ExonRegion 0 47.08 54.05 172.78 89.48 40.12 136.59 24.36 37.22 46.76 23.20 62.58 37.19 19.90 57.58 19.95 61.71 10.73 87.64 64.26 57.33 129.64 181.44 183.07 41 E11a_E12a KnownJunction 1 107.95 56.50 183.97 69.72 44.99 139.98 33.65 48.14 43.87 23.42 45.17 87.33 6.82 17.42 25.34 53.06 0.00 82.24 38.68 38.16 143.32 195.82 161.25 42 ER12a ExonRegion 0 33.24 23.49 101.04 40.70 15.19 72.85 19.12 25.27 29.62 20.92 36.95 11.55 4.77 25.33 17.80 22.56 4.61 47.01 32.53 29.31 80.15 118.34 110.24 43 E12_Da NovelBoundary 0 40.82 29.67 9.64 4.63 25.21 29.07 30.60 10.02 5.35 7.12 21.53 10.80 0.00 7.95 0.00 7.69 0.00 6.43 15.72 18.79 24.34 30.68 35.34 44 ER12b ExonRegion 0 7.17 7.91 3.40 0.45 0.00 5.91 4.93 5.28 1.72 4.27 8.91 0.00 0.00 0.09 0.00 0.00 0.00 0.00 3.54 4.14 9.30 6.60 19.74 45 ER13a ExonRegion 0 1.86 2.10 2.44 3.23 0.87 3.92 0.60 4.33 4.37 1.36 2.15 0.00 0.00 1.20 0.46 3.90 0.00 6.78 1.08 1.68 1.83 2.01 3.64