Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDON Gene 0 33.48 77.11 56.50 61.85 33.53 58.59 28.83 31.17 37.87 27.62 0.58 1.00 1.69 1.31 1.73 1.08 1.43 101.48 63.80 100.11 47.00 26.60 16.08 2 263577 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 392693 Transcript 0 0.58 10.90 8.42 6.62 3.77 0.76 4.52 5.47 3.89 3.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.38 10.29 7.11 1.79 0.51 0.92 4 457160 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG14_AR6 ActiveIntergenicRegion 0 2.14 2.33 15.59 13.49 2.21 7.62 4.91 5.79 0.21 5.61 2.23 0.34 3.01 0.93 1.94 0.33 2.60 4.85 1.13 3.82 0.00 0.00 0.00 6 IG14_AR5 ActiveIntergenicRegion 0 0.41 0.89 12.58 19.92 3.51 6.89 4.12 4.89 2.15 5.18 0.00 0.00 0.00 0.48 0.00 0.00 1.90 4.20 3.98 3.17 1.27 0.40 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.29 0.14 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 2.47 1.08 0.16 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 9 I1_AR3 ActiveIntronRegion 0 2.53 21.98 6.16 10.33 3.74 0.27 7.56 3.61 3.94 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 1.88 17.64 1.95 0.54 0.00 10 I1_SR4 SilentIntronRegion 0 1.35 16.85 9.21 9.26 3.35 1.90 9.49 4.21 4.06 2.06 0.08 0.08 0.00 0.02 0.12 0.00 0.00 6.32 4.73 11.82 0.75 0.40 0.75 11 E2_Ab NovelBoundary 0 3.78 12.63 21.32 16.25 12.05 11.19 12.90 9.61 9.84 20.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 100.86 30.97 74.97 81.86 6.25 4.01 12 ER2a ExonRegion 0 1.98 4.81 10.50 7.86 5.62 5.56 3.18 0.17 4.49 3.86 0.00 0.00 0.00 0.27 0.00 0.00 0.00 30.55 15.61 32.34 31.95 3.68 0.88 13 ER2b ExonRegion 0 2.95 15.11 14.86 23.09 6.78 16.33 8.45 9.39 15.13 15.15 0.00 0.00 0.00 1.20 0.00 0.36 0.00 76.72 31.02 77.63 58.10 13.61 6.75 14 E2a_E3a KnownJunction 0 6.82 24.80 8.37 29.90 11.38 35.95 20.58 19.84 21.04 20.09 0.00 0.00 0.00 0.00 0.00 3.76 0.00 86.02 39.81 79.64 79.57 20.08 23.47 15 ER3a ExonRegion 0 9.54 48.69 32.65 36.23 10.97 18.88 21.31 14.95 27.96 18.75 0.00 0.00 0.72 0.75 0.38 0.98 0.00 109.74 45.41 93.75 54.28 13.46 9.95 16 E3a_E4a KnownJunction 0 3.78 22.04 28.47 27.00 15.96 4.32 14.09 6.20 32.03 17.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.31 44.90 132.12 45.28 8.08 0.00 17 ER4a ExonRegion 0 15.82 37.05 40.19 34.51 10.58 28.87 28.36 12.52 31.29 18.04 0.45 0.00 2.68 1.50 0.71 0.26 0.11 83.40 41.67 95.31 52.98 23.22 14.58 18 E4a_E5a KnownJunction 0 16.82 56.63 37.11 27.17 10.53 16.58 18.68 14.58 35.56 13.81 2.53 0.00 0.00 4.94 0.00 3.76 0.00 42.74 60.14 75.87 50.29 29.76 20.66 19 E4a_E6a NovelJunction 0 0.00 6.31 1.24 3.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.36 4.52 12.66 0.00 0.00 0.00 20 E5_Aa NovelBoundary 0 2.89 12.83 5.41 10.72 7.64 2.21 3.44 4.85 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.76 23.72 35.03 14.46 7.16 6.66 21 ER5a ExonRegion 0 13.93 63.59 31.16 32.94 19.42 27.49 29.03 19.88 31.20 20.17 2.28 0.51 1.37 0.83 0.00 0.78 2.91 75.60 44.09 98.42 56.67 29.34 23.98 22 E5a_E6a KnownJunction 0 12.67 61.57 30.07 32.26 27.08 70.64 27.03 17.66 38.25 21.27 0.00 5.40 0.00 0.00 0.00 0.00 8.60 102.93 42.73 132.76 57.89 26.39 24.50 23 ER6a ExonRegion 0 13.47 44.75 30.99 30.00 12.71 25.06 29.22 16.54 25.95 20.52 1.03 0.83 1.51 0.95 0.00 1.05 1.99 109.63 48.03 98.42 56.43 25.32 25.43 24 E6a_E7a KnownJunction 0 10.82 37.95 36.72 24.17 30.22 13.91 21.64 9.16 36.54 23.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 114.00 73.04 106.93 46.77 27.62 27.66 25 ER7a ExonRegion 0 16.07 45.13 40.93 43.76 16.07 28.98 26.76 19.37 35.98 22.22 0.73 0.00 3.73 1.32 0.00 1.68 0.00 129.74 56.45 125.15 46.08 21.10 18.52 26 E7a_E8a KnownJunction 0 0.00 33.15 29.54 21.11 0.00 28.11 34.31 13.92 34.98 19.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 123.41 14.12 138.51 30.64 15.19 14.94 27 I7_AR1 ActiveIntronRegion 0 3.08 7.52 16.16 8.32 2.83 3.15 5.42 4.76 1.95 2.26 1.02 0.00 0.00 0.21 0.00 0.00 0.44 2.32 5.05 12.93 0.00 0.28 1.16 28 ER8a ExonRegion 0 7.44 36.12 22.33 22.25 8.50 29.16 17.02 20.40 36.63 17.76 0.56 0.00 0.01 1.17 0.00 0.00 0.95 121.11 42.95 107.76 67.56 21.25 17.20 29 E8a_E9a KnownJunction 0 10.52 39.14 25.13 44.68 11.97 10.33 26.28 28.55 41.00 17.00 0.00 0.00 0.00 6.89 0.00 0.00 0.00 179.99 53.08 104.63 71.60 41.39 19.55 30 ER9a ExonRegion 0 9.91 31.69 30.68 31.66 15.73 23.58 19.51 19.84 24.73 24.99 0.00 0.00 0.00 0.96 0.35 0.51 0.35 142.23 54.89 94.55 56.58 27.85 23.51 31 E9_Da NovelBoundary 0 2.89 12.50 20.93 15.65 16.47 6.30 19.87 21.89 17.97 15.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.40 33.70 27.74 10.87 3.12 3.50 32 E9a_E10a KnownJunction 0 6.96 16.38 22.80 29.70 9.76 13.06 8.88 10.88 13.83 16.14 0.00 0.00 0.00 2.47 0.00 0.00 4.68 139.49 59.77 74.72 44.73 31.35 4.27 33 I9_SR1 SilentIntronRegion 0 3.86 19.51 12.89 10.64 3.86 3.97 13.18 6.88 8.53 4.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.50 13.67 19.48 1.54 1.42 1.00 34 E10_Aa NovelBoundary 0 3.78 3.03 11.24 10.62 0.00 2.50 18.33 13.06 8.36 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.36 9.51 22.63 2.72 2.88 0.00 35 ER10a ExonRegion 0 11.65 29.64 32.15 27.19 13.06 22.19 19.07 13.90 28.70 22.51 0.36 0.00 0.00 1.69 0.60 0.00 0.36 133.75 48.56 87.72 60.53 23.32 14.08 36 E10a_E11a KnownJunction 0 16.89 47.16 36.10 33.93 19.27 34.64 38.95 20.21 31.31 22.35 2.58 0.00 0.00 3.00 0.00 0.00 0.00 161.46 97.32 131.67 43.80 31.41 19.04 37 ER11a ExonRegion 0 11.08 33.51 26.37 26.39 8.01 25.95 18.36 16.83 20.51 13.87 1.74 0.00 0.00 1.92 0.00 1.15 0.00 106.81 56.49 96.82 61.04 24.17 16.57 38 E11a_E12a KnownJunction 0 6.67 0.00 8.60 4.10 0.00 0.00 0.00 1.77 10.39 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.40 0.00 3.13 73.64 31.90 10.33 39 ER12a ExonRegion 0 9.98 46.85 28.72 26.08 21.71 44.42 33.85 23.32 29.06 17.80 0.49 0.00 0.00 0.33 0.51 0.74 0.00 112.53 57.23 105.09 64.89 24.74 17.58 40 E12a_E13a KnownJunction 0 12.89 37.16 26.26 33.03 26.91 69.85 25.13 29.08 36.28 21.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 160.47 69.93 104.06 71.23 36.80 16.56 41 ER13a ExonRegion 0 9.99 41.22 31.70 34.47 15.64 40.17 25.89 33.33 51.65 28.58 0.00 0.00 0.00 0.75 0.57 0.00 0.00 135.11 91.89 112.81 73.76 31.36 22.17 42 E13a_E14a KnownJunction 0 7.56 31.64 30.16 34.03 25.98 30.15 20.36 45.92 64.03 28.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 144.05 63.25 103.35 73.14 38.03 32.78 43 ER14a ExonRegion 0 20.87 68.59 21.44 28.94 27.67 70.48 52.85 28.44 49.50 24.21 0.00 0.00 0.00 1.93 0.00 0.00 0.00 128.80 112.69 114.49 46.59 31.19 31.00 44 E14a_E15a KnownJunction 0 10.30 45.26 21.23 14.88 14.69 40.89 24.25 19.47 35.73 21.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73.12 106.54 87.31 34.66 20.27 30.05 45 ER15a ExonRegion 0 11.27 50.54 21.95 27.56 22.02 59.32 26.57 24.87 38.50 22.98 0.00 0.00 0.00 0.71 0.00 0.00 0.00 100.59 57.34 90.36 45.20 34.98 22.73 46 E15a_E16a KnownJunction 0 12.59 81.04 34.98 42.49 16.47 117.94 34.09 26.29 44.18 28.82 0.00 0.00 0.00 2.47 0.00 0.00 0.00 97.91 94.03 115.31 52.39 26.76 24.24 47 ER16a ExonRegion 0 8.32 62.32 33.47 34.56 18.13 52.22 28.45 29.11 40.51 23.12 0.16 0.00 0.00 0.53 0.00 0.68 1.52 114.82 72.19 87.39 47.94 29.31 19.39 48 E16_Da NovelBoundary 0 10.52 66.30 30.90 28.70 31.49 13.69 23.10 16.72 12.33 10.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.41 17.98 40.84 2.41 3.12 0.00 49 E16a_E17a KnownJunction 0 6.67 27.56 20.43 21.58 22.41 62.41 25.22 2.01 26.68 17.94 2.58 0.00 0.00 0.00 0.00 0.00 0.00 94.22 56.57 70.63 48.62 28.84 19.63 50 I16 Intron 0 17.51 55.58 39.77 37.39 17.31 18.91 15.77 19.48 23.06 12.67 0.00 0.00 0.00 0.04 0.00 0.09 0.00 26.64 22.68 22.95 6.90 1.35 1.21 51 I16_SR1 SilentIntronRegion 0 16.27 43.81 18.33 22.68 9.28 22.41 17.09 8.01 10.25 8.13 0.00 0.00 0.00 0.00 0.00 1.65 0.00 17.29 26.01 26.38 3.72 0.46 0.00 52 I16_AR1 ActiveIntronRegion 0 13.75 49.51 36.90 37.23 13.96 21.20 18.26 16.62 27.50 12.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43.59 33.72 30.70 10.78 0.77 1.76 53 I16_SR2 SilentIntronRegion 0 20.77 61.89 44.37 39.08 20.93 16.72 13.61 23.03 20.74 13.29 0.00 0.00 0.00 0.08 0.00 0.00 0.00 13.67 13.31 16.27 4.04 1.93 0.89 54 E17_Aa NovelBoundary 0 9.71 101.10 36.87 25.01 23.51 14.88 22.61 36.56 19.88 3.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.12 54.12 26.59 10.93 2.51 4.35 55 ER17a ExonRegion 0 19.69 73.72 72.02 55.29 24.64 61.28 23.29 36.01 44.39 32.79 0.58 0.00 1.40 0.49 0.00 0.00 0.60 131.81 79.93 93.81 58.61 31.07 17.79 56 E17a_E18a KnownJunction 0 24.15 84.33 95.38 85.10 8.66 82.79 12.72 51.88 48.99 26.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 205.57 78.68 150.97 60.48 41.76 22.62 57 ER18a ExonRegion 0 17.70 59.91 101.80 90.41 19.20 54.19 22.64 36.43 39.59 42.88 1.11 0.00 0.00 0.85 0.00 0.00 0.00 138.42 85.93 109.63 71.12 42.37 16.89 58 E18a_E19a KnownJunction 0 23.93 91.89 97.31 124.53 31.75 82.79 46.15 31.18 33.80 49.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 148.61 135.91 102.08 84.02 57.07 17.16 59 I18 Intron 0 2.50 10.69 8.05 13.84 3.85 3.37 6.00 4.27 2.99 2.11 0.03 0.00 0.11 0.06 0.00 0.02 0.00 5.71 5.26 32.04 0.93 0.31 0.54 60 I18_SR1 SilentIntronRegion 0 2.50 10.69 8.05 13.85 3.85 3.37 6.00 4.27 2.99 2.11 0.03 0.00 0.11 0.06 0.00 0.02 0.00 5.72 5.26 32.05 0.93 0.31 0.54 61 E19_Aa NovelBoundary 0 7.19 8.29 3.52 12.09 6.54 0.00 11.04 8.67 4.17 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.36 0.00 72.29 0.00 0.00 0.00 62 ER19a ExonRegion 0 15.83 80.59 59.22 78.20 28.84 59.82 26.46 24.90 47.10 32.12 0.75 0.00 2.15 0.74 0.54 0.00 0.22 185.91 88.59 130.88 67.66 27.24 16.97 63 E19_Da KnownBoundary 0 3.26 12.04 11.59 11.49 0.00 0.00 11.75 5.71 15.08 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.75 0.00 26.08 2.72 2.94 3.33 64 E19a_E20a KnownJunction 0 27.93 36.18 45.42 59.20 28.78 64.05 15.55 13.23 39.03 25.71 0.00 0.00 0.00 0.00 0.00 0.00 4.49 123.28 76.24 101.24 52.88 15.12 18.69 65 ER19b ExonRegion 0 1.17 9.49 8.01 10.25 3.22 1.51 4.66 6.84 7.79 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.67 10.99 14.22 3.58 1.03 1.83 66 E19_Db NovelBoundary 0 3.63 6.18 10.59 13.95 3.57 2.50 0.00 18.36 7.96 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.92 18.07 26.14 3.15 3.00 0.00 67 E19b_E20a KnownJunction 0 0.00 12.30 8.84 3.00 4.33 0.00 4.37 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.09 9.60 0.00 0.00 0.00 0.00 68 I19 Intron 0 2.04 18.04 12.33 14.29 5.93 3.71 6.89 5.71 6.74 5.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.99 13.82 15.59 1.91 1.41 0.85 69 I19_SR1 SilentIntronRegion 0 2.05 18.11 12.38 14.35 5.96 3.73 6.92 5.73 6.77 5.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.03 13.87 15.65 1.92 1.41 0.85 70 E20_Aa NovelBoundary 0 7.04 19.93 15.49 29.17 7.64 34.13 20.98 12.94 10.73 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.64 8.28 20.84 3.15 0.00 0.00 71 ER20a ExonRegion 0 16.74 64.94 64.81 69.13 33.56 76.87 28.19 24.91 45.40 28.32 0.50 0.00 0.50 0.84 0.00 0.77 1.98 140.02 88.90 105.87 57.94 32.25 23.69 72 E20_Da KnownBoundary 0 13.41 91.69 49.70 54.61 29.54 52.30 25.08 14.21 26.04 18.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.17 67.11 112.69 30.33 28.60 11.27 73 ER20b ExonRegion 0 56.48 108.13 76.13 86.21 50.88 79.48 33.82 41.59 41.68 32.83 0.66 2.00 2.64 1.73 3.40 1.71 2.25 81.09 66.62 101.24 36.88 28.17 13.57 74 IG13_AR7 ActiveIntergenicRegion 0 0.91 13.89 4.81 23.69 6.53 43.05 4.63 3.81 11.34 2.51 0.00 0.00 0.00 0.00 0.00 0.22 0.00 5.42 7.01 13.05 0.00 0.09 0.00 75 IG13_SR5 SilentIntergenicRegion 0 0.31 6.76 5.17 14.95 6.32 39.60 3.30 4.08 11.33 3.50 0.00 0.00 0.00 0.00 0.00 0.06 0.00 14.46 11.16 16.25 0.00 0.36 0.00 76 IG13_AR6 ActiveIntergenicRegion 0 1.05 9.44 2.57 10.03 3.35 56.62 4.99 6.29 7.41 4.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.98 16.42 10.78 0.00 0.63 0.00 77 IG13_SR4 SilentIntergenicRegion 0 0.00 5.86 0.86 11.99 3.37 25.53 3.15 2.50 10.41 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.09 9.22 12.80 0.48 0.00 0.00 78 IG13_AR5 ActiveIntergenicRegion 0 0.29 4.26 1.02 13.34 5.26 40.67 1.77 3.10 11.51 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.03 11.93 12.23 0.00 0.00 0.00 79 IG13_SR3 SilentIntergenicRegion 0 0.00 2.44 1.21 6.95 1.59 16.97 0.63 3.52 7.64 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.04 12.07 9.70 0.00 0.00 0.00 80 IG13_AR4 ActiveIntergenicRegion 0 0.22 3.84 2.28 11.36 3.26 34.43 1.91 4.68 10.91 3.62 0.00 0.00 0.00 0.00 0.00 0.31 0.00 16.81 16.94 11.27 0.00 0.00 0.00 81 IG13_SR2 SilentIntergenicRegion 0 0.00 0.68 0.66 2.66 1.35 9.55 1.34 3.06 10.81 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 14.48 14.91 0.00 0.00 0.00 82 IG13_AR3 ActiveIntergenicRegion 0 0.00 7.37 3.07 8.94 1.39 24.21 1.71 3.00 6.91 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.59 5.77 13.75 0.00 0.00 0.00 83 IG13_AR2 ActiveIntergenicRegion 0 0.00 10.51 2.42 15.93 6.65 30.64 1.91 3.32 9.88 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 4.53 15.20 0.00 0.00 0.00 84 IG13_SR1 SilentIntergenicRegion 0 0.00 3.49 4.99 17.33 2.48 92.74 2.65 3.46 17.20 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 6.14 21.73 0.00 0.00 0.00 85 IG13_AR1 ActiveIntergenicRegion 0 1.46 20.12 5.70 29.44 8.27 52.11 4.10 3.37 18.61 5.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.05 13.75 20.85 0.00 0.36 0.00