Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BCO2 Gene 0 12.65 5.85 2.24 5.06 5.41 4.35 12.53 3.38 3.83 3.20 2.97 2.98 3.25 2.40 3.21 6.46 3.42 2.60 2.40 5.36 4.63 7.98 5.45 2 357685 Transcript 0 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 430950 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 423493 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 393032 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 461480 Transcript 0 2.97 3.53 0.26 1.31 0.38 0.00 6.98 1.45 1.49 1.44 1.36 1.00 0.00 0.38 0.67 3.76 1.37 0.91 0.00 1.14 0.64 0.59 1.65 7 361053 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 460924 Transcript 0 4.38 6.47 0.75 2.51 3.12 1.52 8.05 1.08 1.43 1.58 0.49 3.00 3.84 1.02 0.63 1.45 1.04 0.58 0.92 3.69 0.69 8.49 3.81 9 494860 Transcript 0 7.99 5.30 3.24 3.90 6.87 4.81 10.04 4.27 4.62 3.40 2.62 4.97 5.16 3.41 6.27 6.36 5.11 5.27 5.87 7.17 2.99 6.11 6.96 10 438022 Transcript 0 0.46 0.37 0.40 0.59 0.29 0.27 1.97 0.19 0.20 0.00 0.63 0.26 0.70 0.19 0.45 0.65 0.12 0.37 0.00 1.01 0.48 0.00 0.21 11 355750 Transcript 0 1.41 0.00 0.00 0.00 0.89 0.00 1.32 1.73 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.73 2.78 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 0.00 2.41 0.00 1.36 0.50 0.00 1.23 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 4.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 0.00 3.29 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 2.24 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 0 0.00 3.29 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1c ExonRegion 0 0.00 4.07 0.00 1.36 2.94 0.00 4.63 0.00 1.24 0.00 1.55 0.00 0.00 0.00 0.00 5.94 0.00 0.00 0.00 0.00 0.00 2.50 0.00 17 E1_Af KnownBoundary 0 10.00 6.18 0.00 1.53 4.33 5.79 10.86 3.94 3.18 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 12.00 4.10 18 ER1d ExonRegion 0 0.00 4.07 0.00 1.36 5.35 0.00 7.94 0.00 1.24 0.00 1.93 0.00 0.00 0.00 0.00 5.94 0.00 0.00 0.00 0.00 0.00 4.17 0.00 19 ER1e ExonRegion 0 4.33 7.39 0.00 2.35 5.35 3.50 9.03 2.83 2.25 0.00 1.93 1.18 0.00 0.00 0.00 5.40 0.00 0.00 0.00 0.00 2.00 7.39 2.40 20 ER1f ExonRegion 0 6.08 2.43 0.00 1.42 3.85 5.31 5.71 4.02 1.82 0.61 0.91 2.62 0.00 0.00 0.71 2.15 1.17 0.98 0.00 2.26 3.15 7.58 2.75 21 E1a_E3b KnownJunction 0 7.41 0.00 0.00 0.00 3.82 0.00 3.36 5.91 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 6.25 0.00 22 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER2a ExonRegion 0 0.92 0.74 0.79 1.18 0.58 0.53 3.94 0.37 0.40 0.00 1.26 0.52 1.40 0.37 0.89 1.29 0.24 0.74 0.00 2.02 0.96 0.00 0.43 24 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 1.41 0.00 0.00 0.00 0.89 0.00 1.32 1.73 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.73 2.78 0.00 26 ER3b ExonRegion 0 5.52 2.87 1.30 2.37 2.77 0.96 14.13 3.27 2.85 1.89 0.97 2.55 0.00 2.71 0.51 6.28 1.68 1.84 0.80 4.30 6.48 8.72 5.90 27 E3_Da KnownBoundary 0 0.00 12.17 0.00 3.56 0.00 0.00 2.25 0.00 5.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 28 E3a_E4a KnownJunction 0 3.78 0.00 2.99 1.73 4.33 0.00 10.91 0.00 1.50 1.67 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 2.68 8.46 12.12 8.71 29 ER3c ExonRegion 0 2.97 3.53 0.26 1.31 0.38 0.00 6.98 1.45 1.49 1.44 1.36 1.00 0.00 0.38 0.67 3.76 1.37 0.91 0.00 1.14 0.64 0.59 1.65 30 ER4a ExonRegion 0 5.74 7.74 0.49 4.30 6.55 4.61 20.80 2.83 8.17 3.94 2.53 0.70 1.95 6.31 1.22 7.82 7.65 1.54 1.45 9.57 13.29 11.07 15.71 31 E4_Da KnownBoundary 0 3.70 3.16 0.00 7.03 0.00 2.61 6.45 2.42 4.80 2.77 0.00 0.00 0.00 4.71 0.00 0.00 4.49 0.00 0.00 3.26 8.03 6.18 4.10 32 E4a_E4b KnownJunction 0 0.00 0.00 0.00 1.83 0.00 2.38 4.02 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 33 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER4b ExonRegion 0 7.55 3.37 1.02 4.91 0.90 6.55 18.55 1.99 5.37 2.75 4.49 2.83 2.16 2.76 0.57 5.83 3.75 0.00 1.79 6.17 5.29 7.21 8.63 35 E4_Ab KnownBoundary 0 0.00 3.09 0.00 10.09 4.07 0.00 32.64 2.42 3.18 1.37 9.74 0.00 0.00 2.35 0.00 0.00 8.98 0.00 0.00 0.00 2.97 9.00 7.77 36 ER4c ExonRegion 0 7.62 3.27 1.57 5.74 3.23 10.17 17.79 6.45 3.83 3.58 5.97 4.56 4.16 2.68 0.91 4.06 10.79 0.82 1.77 9.27 4.91 14.75 11.08 37 E4_Db KnownBoundary 0 0.00 2.89 0.00 3.00 0.00 4.54 0.00 0.00 0.00 1.29 0.00 0.00 6.17 0.00 0.00 3.76 0.00 0.00 4.14 2.68 0.00 8.02 14.94 38 E4b_E4c KnownJunction 0 10.15 0.00 0.00 9.56 0.00 2.90 14.84 2.22 0.00 1.29 4.84 0.00 6.49 0.00 0.00 8.20 14.03 0.00 0.00 2.49 3.09 11.21 0.00 39 ER4d ExonRegion 0 4.38 6.47 0.75 2.51 3.12 1.52 8.05 1.08 1.43 1.58 0.49 3.00 3.84 1.02 0.63 1.45 1.04 0.58 0.92 3.69 0.69 8.49 3.81 40 E4_Ac KnownBoundary 0 6.96 12.83 1.63 1.40 3.48 2.38 9.89 2.42 0.00 4.08 4.63 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 2.49 0.00 26.15 8.28 41 ER4e ExonRegion 0 5.75 10.79 0.66 7.23 3.20 14.01 13.59 3.05 3.22 4.67 4.28 3.57 12.64 1.34 2.47 2.42 8.80 3.01 1.59 7.07 5.92 18.42 10.22 42 E4c_E5a KnownJunction 0 3.63 0.00 0.00 3.50 7.72 4.77 17.49 0.00 5.38 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 5.50 8.76 3.76 43 I4 Intron 0 8.36 4.07 1.75 3.83 2.95 1.76 11.45 1.27 2.73 2.03 2.52 2.15 1.28 1.14 2.00 3.71 2.20 1.74 0.93 3.95 1.79 7.50 3.15 44 I4_SR1 SilentIntronRegion 0 7.55 3.86 1.84 3.92 2.97 1.72 11.24 1.11 2.82 2.09 2.32 2.04 1.24 1.17 2.02 3.84 2.12 1.87 0.95 4.01 1.65 7.85 3.10 45 I4_AR1 ActiveIntronRegion 0 19.17 6.97 0.58 2.86 2.78 2.26 14.42 3.44 1.49 1.41 5.32 3.67 1.85 0.73 1.87 2.06 3.33 0.00 0.62 3.28 3.73 3.11 3.93 46 E5_Aa NovelBoundary 0 6.30 0.00 0.00 3.73 7.05 5.11 23.54 4.48 10.39 3.65 5.26 0.00 0.00 4.59 0.00 0.00 0.00 1.66 0.00 2.81 0.00 10.84 8.28 47 ER5a ExonRegion 0 16.55 3.23 3.39 5.88 6.84 1.73 8.58 0.99 6.86 1.77 5.60 2.82 1.93 1.25 0.81 8.64 5.27 1.83 1.51 3.32 3.37 7.43 6.67 48 E5_Da NovelBoundary 0 25.34 11.12 0.00 14.35 4.16 0.00 16.74 2.55 5.58 8.78 4.37 6.30 6.82 0.00 11.50 12.30 3.55 0.00 0.00 15.34 5.07 14.45 0.00 49 E5a_E6a KnownJunction 0 17.48 0.00 2.42 0.00 0.00 2.73 2.25 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 4.19 0.00 2.11 0.00 0.00 2.84 5.45 0.00 50 I5 Intron 0 15.12 8.77 4.13 6.04 4.73 1.56 10.77 3.10 4.69 3.39 1.91 2.88 1.97 0.93 0.78 5.05 1.17 2.73 0.90 6.02 2.96 9.58 2.70 51 I5_AR1 ActiveIntronRegion 0 14.98 11.22 3.99 5.92 4.46 1.53 11.99 2.68 5.56 3.56 1.81 3.05 1.29 1.09 0.73 3.71 1.37 2.20 0.33 5.09 1.61 10.41 2.45 52 I5_SR1 SilentIntronRegion 0 15.56 3.62 4.47 6.34 5.36 1.63 8.26 4.02 2.87 3.05 2.15 2.55 3.44 0.60 0.91 7.94 0.74 3.89 2.13 8.06 5.88 7.89 3.27 53 E6_Aa NovelBoundary 0 26.75 5.72 6.56 7.03 15.62 0.00 25.04 2.09 8.97 9.48 4.74 0.00 6.82 6.95 0.00 19.31 0.00 2.32 7.15 8.88 8.71 6.06 0.00 54 ER6a ExonRegion 0 39.32 13.86 3.33 7.84 8.91 15.50 22.84 3.23 9.01 4.84 3.76 4.49 1.86 4.49 4.78 9.45 2.73 3.99 1.74 2.76 7.17 17.13 1.93 55 E6a_E7a KnownJunction 0 42.53 8.68 1.83 12.82 12.65 8.35 29.85 3.98 11.31 3.65 2.00 6.15 8.28 12.01 10.75 21.45 4.58 2.11 0.00 2.43 8.71 23.45 0.00 56 ER7a ExonRegion 0 49.44 9.85 2.03 14.22 23.29 9.63 33.96 8.56 8.65 5.09 5.17 3.97 3.43 4.23 3.90 14.33 2.36 3.10 3.87 5.43 10.19 17.90 8.20 57 E7a_E8a KnownJunction 0 58.08 17.23 1.39 10.75 26.83 25.10 26.54 1.64 11.52 2.95 4.90 0.00 0.00 4.89 4.94 30.50 0.00 2.11 0.00 3.20 11.43 28.41 3.84 58 ER8a ExonRegion 0 49.39 10.15 4.65 12.52 7.15 7.18 15.82 5.49 7.46 8.64 9.33 2.64 1.70 4.61 5.82 17.79 4.04 2.64 3.00 10.30 10.70 17.60 7.36 59 E8a_E9a KnownJunction 0 51.56 0.00 0.00 6.93 4.33 7.95 20.58 9.57 1.10 3.68 5.26 0.00 0.00 0.00 10.75 20.08 4.39 2.07 8.38 3.26 5.68 8.94 11.87 60 ER9a ExonRegion 0 31.76 6.29 8.04 11.11 6.89 9.35 27.83 10.00 5.13 8.63 5.83 1.10 0.00 2.61 6.70 17.17 7.84 1.56 2.16 11.18 8.32 12.98 2.33 61 E9_Da KnownBoundary 0 32.38 0.00 4.52 10.85 12.31 0.00 7.99 5.50 7.90 4.11 4.47 0.00 0.00 4.94 11.13 15.55 0.00 1.45 4.14 22.31 5.75 5.82 3.41 62 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E9_Db KnownBoundary 0 14.45 3.09 0.00 2.03 0.00 2.90 7.68 0.00 0.00 0.00 4.95 0.00 0.00 2.47 0.00 0.00 0.00 2.28 0.00 0.00 0.00 5.51 4.35 64 E9b_E10a KnownJunction 0 66.83 0.00 3.08 5.93 7.30 11.36 2.03 2.01 3.56 4.89 7.53 0.00 6.82 2.47 0.00 13.07 0.00 4.15 7.72 8.44 8.34 11.82 7.85 65 ER9b ExonRegion 0 52.80 1.81 5.85 9.77 11.74 10.60 10.00 4.23 6.45 4.78 11.06 0.00 3.65 6.32 5.80 18.82 0.00 5.54 5.84 15.01 6.61 13.66 6.69 66 ER9c ExonRegion 0 11.71 4.68 0.00 2.29 2.85 6.39 10.44 0.72 2.37 1.05 5.09 3.46 0.00 0.78 2.42 8.57 7.04 1.60 0.00 4.43 0.00 7.95 3.52 67 E9_Dc KnownBoundary 0 13.63 2.70 0.00 1.80 11.88 2.90 15.28 2.30 1.79 3.09 4.79 12.45 0.00 0.00 0.00 7.69 4.77 0.00 0.00 2.81 0.00 14.39 0.00 68 ER9d ExonRegion 0 15.98 10.61 6.48 7.81 13.75 9.61 20.07 8.54 8.00 6.80 5.24 9.94 10.32 6.83 12.54 12.72 10.22 10.54 11.74 14.34 5.99 12.22 13.91 69 I9 Intron 0 19.95 2.25 3.04 3.38 1.48 5.08 5.14 0.00 0.00 0.95 0.00 0.00 0.00 0.74 0.00 1.65 3.66 3.05 0.00 1.18 1.22 1.15 3.26 70 I9_AR1 ActiveIntronRegion 0 20.17 2.28 3.07 3.41 1.50 5.14 5.19 0.00 0.00 0.96 0.00 0.00 0.00 0.75 0.00 1.67 3.70 3.09 0.00 1.19 1.24 1.17 3.29 71 E10_Aa NovelBoundary 0 33.34 12.37 4.44 13.82 0.00 13.69 27.87 4.23 4.37 1.56 0.00 0.00 0.00 0.00 0.00 4.02 4.68 4.19 0.00 9.33 0.00 11.02 0.00 72 ER10a ExonRegion 0 47.65 7.86 7.83 13.58 7.30 3.88 10.16 5.29 5.61 5.87 7.00 1.99 2.83 3.57 7.48 13.50 6.87 6.06 2.35 6.96 16.48 12.14 7.38 73 E10a_E11a KnownJunction 0 26.38 18.55 7.04 21.64 11.88 0.00 8.35 5.01 5.99 5.88 5.00 0.00 0.00 2.47 0.00 12.05 4.77 3.86 0.00 3.00 19.77 8.39 7.85 74 ER11a ExonRegion 0 24.21 8.85 4.00 11.33 8.03 4.94 14.73 3.35 4.78 5.56 5.56 2.92 4.57 1.91 4.36 9.77 1.64 2.27 1.37 3.90 10.73 8.52 5.32 75 E11_Da KnownBoundary 0 14.08 6.51 3.34 1.96 0.00 2.38 6.40 0.00 0.00 0.00 0.00 6.30 0.00 2.12 0.00 4.36 0.00 0.00 0.00 0.00 0.00 3.12 0.00 76 E11_Db KnownBoundary 0 30.67 13.02 0.00 3.76 8.40 0.00 13.65 5.09 1.39 0.00 2.47 0.00 6.49 2.41 6.06 7.86 0.00 0.00 4.80 2.94 2.97 5.57 0.00 77 ER11b ExonRegion 0 20.55 10.34 2.35 4.09 5.35 0.92 9.05 3.46 1.03 0.00 2.42 3.61 1.76 2.23 2.90 8.42 0.00 0.00 3.19 2.13 1.56 4.60 0.00 78 ER11c ExonRegion 0 4.78 3.72 0.20 2.27 1.97 0.78 4.70 2.19 1.58 2.11 0.74 0.60 1.56 0.63 0.68 2.38 0.28 0.85 0.41 1.97 1.80 3.63 1.24 79 E11_Dc KnownBoundary 0 3.48 2.43 0.00 3.43 3.23 0.00 17.62 0.00 1.68 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 10.72 0.00 80 ER11d ExonRegion 0 3.30 1.84 0.00 2.01 1.66 0.00 11.11 0.00 0.88 0.69 0.00 0.00 1.12 0.78 0.00 2.58 0.00 0.80 0.00 0.22 1.28 4.71 0.85