Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BACE1 Gene 0 54.60 207.57 126.45 170.50 104.69 356.87 74.67 123.10 129.57 183.14 10.06 10.38 28.01 36.52 12.58 11.36 20.03 185.75 100.03 154.26 218.82 202.70 147.54 2 292095 Transcript 0 5.20 17.92 84.56 133.47 13.26 73.54 19.10 45.91 69.31 107.13 1.87 0.00 1.99 1.44 3.03 6.05 4.21 198.98 22.64 50.78 52.02 26.05 37.50 3 428381 Transcript 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 4 313005 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 392937 Transcript 0 0.00 8.68 6.36 15.08 7.81 4.83 2.12 0.00 2.66 9.05 0.00 0.00 0.00 5.24 0.00 0.00 0.00 26.86 4.33 27.42 18.78 11.21 12.46 6 445823 Transcript 0 0.00 0.00 1.83 1.96 0.00 4.54 0.00 2.18 0.00 4.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 0.00 7 IG6_AR1 ActiveIntergenicRegion 0 2.83 8.40 6.33 13.11 8.64 14.86 5.81 8.31 6.24 11.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.55 8.64 18.68 4.79 2.42 5.39 8 ER1a ExonRegion 0 1.28 7.40 15.36 10.67 4.08 42.32 6.03 13.49 19.78 38.86 0.14 0.00 1.15 4.02 1.48 0.42 2.10 66.48 18.14 38.13 100.61 25.50 46.33 9 E1a_E2a KnownJunction 0 6.22 21.90 33.53 37.26 7.13 102.21 22.57 31.22 45.66 87.70 0.00 0.00 0.00 9.48 0.00 0.00 0.00 185.96 38.87 85.07 170.26 84.38 105.17 10 I1_SR1 SilentIntronRegion 0 1.81 4.50 11.07 10.27 2.52 6.60 5.15 9.50 4.28 11.56 0.00 0.00 0.88 1.81 1.74 0.00 0.75 38.73 9.84 23.96 3.84 3.76 8.80 11 I1_AR1 ActiveIntronRegion 0 2.24 6.61 15.84 12.69 2.29 8.36 5.40 8.21 8.26 18.04 0.00 0.63 2.25 0.80 2.22 0.43 0.48 37.94 13.22 24.11 10.40 5.80 14.08 12 I1_AR4 ActiveIntronRegion 0 1.38 2.61 1.00 0.75 11.41 5.99 3.94 2.40 0.30 2.13 0.75 0.00 0.00 14.68 5.33 0.00 0.00 11.50 0.00 8.08 4.63 0.47 0.60 13 I1_AR5 ActiveIntronRegion 0 1.90 8.76 20.76 22.52 11.42 15.98 9.30 16.17 8.31 14.97 0.00 0.00 2.77 4.28 0.89 0.00 1.78 41.80 9.72 20.30 10.84 9.39 9.94 14 ER2a ExonRegion 0 5.95 33.91 30.12 31.42 9.05 114.31 19.67 28.33 53.23 88.80 0.69 0.00 4.11 9.98 0.00 0.00 3.78 126.52 47.57 74.52 225.00 85.54 84.54 15 E2a_E3a KnownJunction 0 11.26 53.35 37.52 38.99 28.61 90.91 19.08 33.56 67.22 102.10 2.47 0.00 0.00 25.25 0.00 0.00 0.00 163.49 17.51 96.96 237.66 73.42 105.85 16 ER3a ExonRegion 0 6.05 36.29 56.50 74.30 9.41 107.65 24.16 51.71 83.07 122.30 1.16 0.00 10.98 35.23 10.07 1.78 10.02 254.51 63.59 134.57 257.50 140.60 111.66 17 E3_Da KnownBoundary 0 6.96 46.97 69.16 117.40 11.29 189.95 29.41 81.08 109.14 141.94 2.63 0.00 20.13 33.55 5.32 4.36 4.58 311.94 73.32 139.85 309.01 181.31 178.07 18 E3a_E4a KnownJunction 0 0.00 0.00 1.83 1.96 0.00 4.54 0.00 2.18 0.00 4.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 0.00 19 E3a_E4b KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 20 ER3b ExonRegion 0 10.26 40.92 58.13 70.67 31.16 184.23 32.00 48.76 93.92 139.77 0.28 0.00 6.04 29.26 7.82 0.00 11.13 223.13 65.08 130.62 289.72 140.80 156.11 21 E3b_E4a KnownJunction 0 15.78 28.42 57.63 93.93 40.83 191.82 34.31 86.63 100.52 118.49 0.00 0.00 13.64 27.08 4.57 0.00 4.21 232.72 39.15 71.52 259.40 138.94 132.06 22 E3b_E4b KnownJunction 0 0.00 8.68 6.36 15.08 7.81 4.83 2.12 0.00 2.66 9.05 0.00 0.00 0.00 5.24 0.00 0.00 0.00 26.86 4.33 27.42 18.78 11.21 12.46 23 E3b_E5a NovelJunction 0 0.00 0.00 1.83 1.63 0.00 0.00 2.25 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 4.24 2.62 6.30 11.45 0.00 24 ER4a ExonRegion 0 11.59 57.02 70.94 78.35 46.61 195.42 29.58 66.73 95.07 147.47 0.00 0.00 10.86 31.54 6.30 0.00 15.77 286.01 47.99 109.43 279.49 137.05 158.35 25 E4_Ab KnownBoundary 0 17.19 69.72 62.86 72.35 64.86 147.59 34.62 39.31 104.66 148.63 0.00 0.00 6.82 24.02 0.00 0.00 8.42 287.06 45.37 106.81 290.35 125.83 195.48 26 ER4b ExonRegion 0 8.98 66.55 56.70 80.34 42.29 191.31 44.50 46.81 103.63 152.46 0.00 0.00 9.23 27.45 5.05 0.00 12.67 232.37 54.97 124.26 300.84 121.15 144.75 27 E4a_E5a KnownJunction 0 14.15 135.70 54.58 103.58 45.93 244.29 50.39 66.62 111.05 186.18 0.00 0.00 0.00 29.20 0.00 0.00 4.77 205.15 67.20 122.91 394.57 141.82 125.06 28 I4 Intron 0 34.82 40.91 33.86 69.71 35.02 53.34 20.00 30.24 17.62 38.73 5.20 3.58 13.16 10.14 11.22 8.45 8.15 18.35 23.11 26.57 16.64 24.15 17.57 29 I4_AR1 ActiveIntronRegion 0 34.92 41.03 33.96 69.91 35.12 53.50 20.06 30.33 17.67 38.84 5.22 3.59 13.20 10.17 11.25 8.47 8.17 18.40 23.17 26.65 16.69 24.22 17.62 30 E5_Aa NovelBoundary 0 41.86 77.82 90.09 179.80 110.02 129.53 34.27 54.01 35.33 93.59 10.48 6.30 74.02 19.31 24.11 15.64 9.26 40.00 62.59 48.19 20.39 40.66 35.08 31 ER5a ExonRegion 0 62.71 180.37 134.04 197.23 111.41 369.88 90.50 85.64 132.77 176.61 7.17 2.69 40.99 50.61 34.28 8.45 18.73 265.51 126.02 170.70 329.90 166.33 187.77 32 E5_Da NovelBoundary 0 146.40 207.40 99.41 232.07 73.51 146.34 48.58 70.57 39.35 53.75 13.06 6.30 49.02 2.47 22.00 28.62 18.23 86.51 62.59 71.72 19.03 16.96 19.97 33 E5a_E6a KnownJunction 0 23.49 123.93 133.73 236.57 45.93 374.95 92.26 107.74 163.74 216.75 0.00 0.00 25.97 45.03 5.19 4.36 12.81 459.34 110.31 158.00 438.62 261.47 267.78 34 I5 Intron 0 66.38 52.64 38.19 74.84 25.93 68.27 15.71 21.35 15.96 18.31 12.32 7.79 15.23 14.45 20.13 15.16 13.89 32.09 32.08 40.69 17.13 18.86 18.72 35 I5_AR1 ActiveIntronRegion 0 127.29 85.07 82.00 155.92 38.55 102.65 23.87 42.84 32.66 38.38 22.50 11.15 28.60 20.09 34.75 26.36 23.79 64.90 57.39 69.58 32.95 31.75 32.54 36 I5_SR1 SilentIntronRegion 0 32.67 32.75 2.45 12.27 21.55 60.30 11.55 6.91 4.94 1.15 0.00 0.00 5.74 9.62 9.39 3.99 2.22 9.26 4.28 19.99 1.48 4.19 9.85 37 I5_AR5 ActiveIntronRegion 0 4.68 21.04 0.00 2.24 11.87 27.79 7.34 0.95 0.00 1.25 5.71 7.69 2.85 9.78 6.81 6.59 7.32 1.37 14.13 14.12 4.87 10.01 5.43 38 E6_Aa NovelBoundary 0 26.75 66.96 53.55 89.07 23.26 59.34 33.12 19.22 25.23 33.71 11.37 5.40 6.82 36.26 23.61 21.96 34.03 62.55 25.69 35.79 26.81 26.76 19.97 39 ER6a ExonRegion 0 32.95 124.73 119.89 207.83 62.88 360.52 67.51 120.42 176.94 219.04 5.00 3.44 19.04 50.59 17.15 7.46 20.52 396.36 150.24 201.79 434.82 214.64 238.24 40 E6_Da NovelBoundary 0 21.26 52.36 51.68 89.27 31.41 92.11 26.90 29.78 21.33 38.79 18.90 24.91 6.66 32.20 9.15 27.09 3.74 32.50 34.82 30.55 16.12 13.29 26.55 41 E6a_E7a KnownJunction 0 20.74 105.57 163.77 224.78 71.05 325.38 68.50 101.00 166.52 220.56 0.00 0.00 6.82 20.66 13.35 4.36 0.00 355.01 170.17 174.75 416.75 132.57 224.93 42 I6 Intron 0 10.94 28.70 23.99 61.31 25.42 71.24 11.84 14.76 13.12 23.89 8.91 6.16 8.87 14.83 9.32 11.63 13.84 29.40 24.48 38.94 19.40 11.65 16.41 43 I6_AR1 ActiveIntronRegion 0 10.47 15.48 27.81 47.97 17.31 63.51 9.58 9.80 11.90 18.88 6.62 8.24 7.35 14.82 10.26 6.76 13.82 11.90 12.12 36.42 14.27 13.48 10.06 44 I6_AR2 ActiveIntronRegion 0 11.31 36.68 21.97 69.65 30.39 76.36 13.27 17.78 13.94 27.02 10.33 4.99 9.83 14.96 8.86 14.56 13.97 39.88 31.91 40.75 22.56 10.68 20.27 45 E7_Aa NovelBoundary 0 6.52 28.35 44.41 118.00 10.19 115.39 16.74 38.57 30.44 30.54 7.48 0.00 6.49 17.07 14.09 15.89 7.95 49.50 36.52 65.26 15.26 8.02 35.17 46 ER7a ExonRegion 0 30.17 125.02 141.67 220.63 91.94 352.15 63.86 116.97 162.01 212.24 5.91 2.51 23.79 49.97 21.91 11.57 28.37 383.04 148.95 197.42 449.62 224.46 234.87 47 E7_Da NovelBoundary 0 31.56 50.71 42.02 101.49 30.73 97.33 17.00 51.06 37.47 36.99 25.16 0.00 20.29 23.90 8.90 20.08 47.87 67.57 41.88 49.98 27.68 19.59 7.51 48 E7a_E8a KnownJunction 0 27.86 77.55 122.53 138.24 78.61 295.68 48.18 136.57 158.77 187.42 0.00 0.00 6.01 46.32 8.90 0.00 17.11 348.71 90.17 136.14 385.74 143.96 186.60 49 I7 Intron 0 13.94 32.41 26.39 61.72 20.47 62.09 12.94 26.28 21.51 25.06 18.89 10.50 12.43 23.16 10.95 20.84 20.34 63.65 34.52 48.83 26.22 14.61 24.96 50 I7_AR1 ActiveIntronRegion 1 12.64 36.78 26.98 68.00 26.21 67.86 12.97 29.59 23.79 26.77 20.84 11.02 6.45 20.69 8.38 20.34 18.24 65.98 34.03 46.58 26.76 13.38 28.32 51 I7_SR1 SilentIntronRegion 0 18.73 32.71 31.19 65.19 14.72 71.88 15.76 26.82 24.21 27.77 19.46 12.48 27.75 34.35 18.57 23.53 28.83 76.22 40.61 66.17 32.98 19.55 23.00 52 E8_Aa NovelBoundary 0 5.85 37.89 24.60 84.37 20.63 87.05 16.47 23.54 23.73 30.97 12.48 0.00 21.43 17.19 6.30 20.34 13.74 76.11 27.58 39.69 14.76 15.43 33.04 53 I7_AR2 ActiveIntronRegion 0 11.32 8.68 13.86 21.65 1.75 10.37 7.28 7.71 3.56 10.72 7.58 3.66 12.81 13.49 9.04 18.86 14.35 25.73 25.73 25.61 9.49 11.46 11.63 54 E8a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E8_Ab NovelBoundary 0 22.08 51.90 93.28 99.55 28.10 269.73 28.88 77.51 74.68 120.40 10.37 5.70 12.99 27.14 20.40 19.82 12.62 206.44 115.86 111.86 211.65 73.66 91.68 56 ER8a ExonRegion 0 22.58 72.70 124.27 143.56 50.39 283.78 39.06 118.83 131.54 191.44 2.09 1.08 9.77 46.42 20.31 2.97 15.68 359.08 95.30 132.09 360.86 129.18 148.79 57 ER8b ExonRegion 0 22.86 66.29 133.32 167.63 53.51 291.94 38.13 124.79 135.37 197.04 3.87 6.06 9.38 38.33 22.63 5.94 15.18 374.72 109.58 140.00 351.71 137.51 135.67 58 ER8c ExonRegion 0 31.51 118.59 148.44 189.48 56.34 336.95 41.88 119.66 141.19 219.32 10.16 22.39 20.37 40.60 18.07 14.44 16.88 423.29 150.53 178.42 389.68 160.97 183.08 59 E8_Db KnownBoundary 0 17.48 88.34 60.29 85.27 34.72 189.21 19.78 36.27 33.04 76.42 6.84 18.61 6.33 14.89 4.70 4.27 13.65 155.86 107.39 80.28 164.33 90.20 99.87 60 E8b_E8c KnownJunction 0 0.00 0.00 124.12 172.64 0.00 0.00 0.00 72.04 89.84 146.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 228.91 0.00 0.00 0.00 0.00 0.00 61 E8_Ac KnownBoundary 0 5.85 49.79 48.40 89.07 35.99 159.17 32.50 34.87 80.64 103.74 12.32 13.35 12.82 9.71 4.45 22.47 16.36 170.50 109.84 112.75 196.58 70.48 114.13 62 ER8d ExonRegion 0 33.86 128.12 161.50 209.34 64.22 338.15 45.54 110.97 155.62 247.27 15.85 30.31 35.64 40.28 9.28 29.72 23.11 464.52 185.39 227.23 405.92 178.35 195.58 63 ER8e ExonRegion 0 32.18 117.88 161.83 230.35 75.28 377.79 65.57 97.03 172.81 255.99 14.25 23.26 33.47 58.33 15.29 28.76 29.99 477.47 197.98 267.33 419.83 202.14 207.76 64 E8_Dc KnownBoundary 0 16.67 75.58 80.60 88.30 40.66 127.09 37.54 25.92 66.12 109.62 4.63 0.00 0.00 9.12 0.00 11.96 17.02 184.76 64.47 142.15 161.49 98.22 96.03 65 E8c_E8d KnownJunction 0 20.82 71.70 126.07 237.27 53.06 294.15 76.40 77.59 123.99 188.11 7.48 0.00 7.95 5.77 12.11 24.18 16.83 370.47 90.54 203.13 208.07 104.22 149.98 66 E8_Ad KnownBoundary 0 29.12 47.89 53.04 143.44 51.02 197.84 19.30 53.40 50.12 100.17 0.00 0.00 26.62 12.89 20.64 25.29 12.72 185.84 100.52 129.88 115.71 79.85 102.18 67 ER8f ExonRegion 0 46.56 130.83 142.14 233.96 110.60 399.16 79.88 95.64 154.39 253.47 11.60 12.99 60.97 60.09 42.55 40.62 24.21 468.71 179.44 303.55 381.24 217.38 223.18 68 ER8g ExonRegion 0 36.26 103.44 127.30 216.29 80.83 386.69 57.68 111.31 140.27 237.45 6.02 0.98 36.37 69.47 41.66 20.75 18.93 407.06 148.75 214.93 396.34 190.23 186.89 69 E8_Dd NovelBoundary 0 17.19 45.78 33.88 148.47 44.14 132.82 30.74 33.89 36.83 58.53 10.37 12.60 6.82 33.67 19.53 30.59 20.20 127.22 56.75 101.50 15.69 14.39 51.56 70 E8d_E9a KnownJunction 0 36.38 93.27 120.19 170.51 54.33 382.85 67.13 121.41 139.64 229.83 0.00 0.00 13.80 37.20 4.45 0.00 8.42 344.98 121.13 175.01 404.15 147.82 191.81 71 I8 Intron 0 16.74 40.50 41.63 92.05 25.65 101.03 25.75 33.32 35.46 45.81 16.73 10.24 25.68 25.16 12.26 28.49 24.58 87.46 53.95 67.53 38.14 22.30 31.70 72 I8_AR1 ActiveIntronRegion 0 17.54 42.44 44.10 97.41 27.13 106.20 27.07 34.93 37.39 48.02 17.78 10.71 27.31 26.00 12.83 29.54 25.49 92.26 57.32 70.54 40.17 23.46 33.01 73 I8_AR2 ActiveIntronRegion 0 8.89 21.76 11.03 26.44 8.03 47.68 12.97 14.69 12.60 19.38 4.45 4.33 7.50 17.05 5.80 23.78 13.20 28.82 9.87 44.68 18.07 10.42 27.02 74 I8_SR1 SilentIntronRegion 0 3.97 9.41 4.70 11.41 3.12 19.03 4.47 8.86 6.23 12.57 0.40 3.25 0.39 11.98 3.38 9.29 11.42 15.17 4.25 16.40 5.23 3.73 6.85 75 E9_Aa NovelBoundary 0 3.11 26.05 46.42 60.00 16.13 75.24 26.19 34.71 29.43 43.22 22.64 0.00 6.82 24.25 15.20 36.40 30.67 85.93 67.86 37.52 27.06 7.29 37.99 76 ER9a ExonRegion 0 31.87 95.97 132.07 186.53 49.06 299.52 49.21 97.03 135.79 208.86 10.04 5.41 13.55 55.27 11.20 1.82 7.89 358.62 133.08 192.73 382.71 176.12 207.20 77 E9_Da KnownBoundary 0 24.30 47.29 67.32 86.94 35.06 145.09 20.40 44.32 52.66 97.37 10.06 0.00 0.00 22.19 5.32 0.00 0.00 166.02 51.01 102.33 152.40 78.13 108.75 78 E9a_E9b KnownJunction 0 0.00 0.00 88.05 123.99 0.00 0.00 0.00 34.01 63.43 93.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 196.53 0.00 0.00 0.00 0.00 0.00 79 E9_Ab KnownBoundary 0 30.89 63.61 70.31 90.03 30.31 142.76 32.86 27.60 52.86 98.37 4.69 0.00 6.82 16.36 16.56 3.85 16.36 181.69 142.12 115.88 150.43 132.51 130.86 80 ER9b ExonRegion 0 44.45 117.95 144.10 198.44 52.98 309.55 48.72 75.36 136.60 198.41 17.78 8.66 23.45 69.51 20.31 2.97 14.52 363.64 182.20 221.28 389.62 219.19 237.28 81 ER9c ExonRegion 0 39.96 132.47 153.93 202.20 54.05 372.15 55.10 68.59 126.72 193.99 13.38 2.51 17.92 54.54 15.14 5.65 15.05 330.60 244.83 227.87 376.92 219.64 198.58 82 E9_Db KnownBoundary 0 45.64 163.59 164.19 210.46 105.09 403.57 71.72 78.82 122.97 190.34 11.69 0.00 21.91 45.38 19.66 16.32 8.51 282.84 276.34 239.24 472.47 170.47 199.41 83 ER9d ExonRegion 0 71.80 273.89 152.56 204.82 135.34 435.15 93.40 154.25 150.71 210.60 13.24 14.11 35.20 40.84 13.55 14.48 24.12 173.64 110.65 171.91 205.15 243.97 157.42