Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC84 Gene 0 232.95 127.96 140.92 186.47 102.74 84.35 49.77 79.22 65.52 51.20 56.42 17.16 34.65 61.73 122.59 105.68 91.18 84.19 63.79 105.53 47.58 60.91 55.69 2 334418 Transcript 0 302.33 155.24 158.48 195.20 126.62 102.50 57.74 82.64 65.93 50.61 62.41 19.85 31.39 67.65 134.06 111.37 96.26 76.50 63.39 111.19 48.10 59.01 57.31 3 IG41 Intergenic 0 15.82 16.23 22.09 28.31 22.23 15.03 11.43 10.88 4.39 14.63 2.23 9.49 10.98 14.87 15.54 21.04 23.84 30.19 21.74 22.83 8.83 5.79 8.48 4 IG41_SR1 SilentIntergenicRegion 0 2.47 3.84 2.36 5.55 4.11 1.02 3.16 2.30 1.19 6.07 0.00 9.14 5.12 10.05 3.71 5.89 12.35 13.89 15.99 10.44 4.49 4.40 4.51 5 IG41_AR1 ActiveIntergenicRegion 0 19.94 21.04 6.25 10.65 48.20 16.80 20.03 5.81 0.43 7.88 5.71 11.29 15.57 23.56 17.41 30.50 14.73 12.88 22.81 23.28 14.40 8.88 11.66 6 IG41_AR2 ActiveIntergenicRegion 0 32.60 27.67 46.26 60.38 43.78 29.49 21.29 25.33 6.88 25.14 3.41 19.74 23.38 26.43 29.46 43.62 46.29 56.01 43.28 36.63 14.94 12.97 18.64 7 IG41_AR3 ActiveIntergenicRegion 0 9.42 17.79 22.51 19.60 15.61 12.33 12.33 7.28 4.26 18.28 2.25 10.79 10.37 17.95 17.13 19.53 26.24 26.41 17.45 20.11 12.17 5.49 6.79 8 IG41_SR4 SilentIntergenicRegion 0 16.40 8.32 26.46 34.85 22.99 24.13 6.26 9.27 4.10 17.39 0.00 1.28 15.35 9.82 11.08 13.31 16.35 34.23 20.49 20.70 10.92 3.41 5.41 9 IG41_AR4 ActiveIntergenicRegion 0 10.64 14.23 15.76 23.07 13.42 10.42 7.38 7.87 5.11 11.73 1.85 4.52 4.75 10.18 11.39 13.87 18.10 27.42 15.71 22.68 5.62 2.50 4.22 10 ER1a ExonRegion 0 24.03 12.94 20.99 22.70 12.53 26.08 12.28 7.40 13.39 14.64 12.21 0.89 1.12 11.96 25.01 21.83 35.43 36.42 12.90 42.99 23.83 7.14 8.88 11 E1a_E2a KnownJunction 1 7.33 6.45 38.61 21.58 12.22 5.68 0.00 18.44 21.93 28.10 34.69 0.00 0.00 24.13 32.02 15.72 87.98 36.77 17.60 79.07 57.70 8.33 19.97 12 ER2a ExonRegion 0 34.73 28.16 53.72 50.27 27.52 40.50 14.65 40.42 34.51 33.78 25.00 2.22 3.26 38.05 75.27 90.32 71.27 135.73 32.59 108.69 45.32 19.83 50.07 13 E2a_E3a KnownJunction 0 33.49 126.16 75.37 62.60 172.92 154.91 77.64 59.56 46.21 40.99 46.70 18.16 18.99 54.92 89.87 77.67 90.60 96.30 29.08 108.53 52.88 16.23 14.94 14 ER3a ExonRegion 0 38.01 79.78 79.98 64.68 144.76 120.22 128.13 54.23 41.26 34.08 58.65 22.78 59.03 57.53 94.51 85.68 99.09 88.24 66.09 93.19 55.94 26.03 23.85 15 E3_Da NovelBoundary 1 20.08 38.02 44.17 110.97 177.84 49.18 67.13 62.02 66.03 42.23 10.84 43.21 68.34 77.87 108.91 101.51 86.40 82.12 67.77 141.83 47.63 35.88 73.92 16 E3a_E4a KnownJunction 0 36.23 29.14 65.52 24.67 3.90 10.45 14.35 14.38 9.00 6.04 27.53 10.80 0.00 26.13 14.34 20.25 41.51 13.68 28.89 15.02 9.08 2.82 0.00 17 I3 Intron 1 32.31 28.02 27.14 54.19 47.54 31.22 38.55 30.27 31.96 19.40 13.19 29.65 68.38 25.88 41.59 36.74 40.81 29.50 30.12 64.53 12.95 22.52 26.98 18 I3_AR1 ActiveIntronRegion 1 54.14 54.59 57.37 112.87 73.50 49.22 67.73 63.44 68.02 39.40 22.58 60.25 133.91 40.55 73.86 59.58 78.71 52.12 49.29 126.65 20.17 40.46 40.79 19 I3_AR2 ActiveIntronRegion 0 5.49 14.06 0.00 0.00 9.25 6.34 3.43 0.00 0.00 0.00 11.70 12.33 23.61 11.23 22.72 23.12 17.12 0.00 5.51 23.91 13.33 5.40 17.77 20 I3_SR2 SilentIntronRegion 0 21.59 8.84 6.41 14.61 38.03 23.92 23.04 7.75 7.08 6.29 6.46 7.20 22.88 18.95 20.34 23.36 14.35 17.84 21.31 20.99 8.11 11.85 20.13 21 I3 Intron 0 62.84 32.86 37.28 74.35 50.72 42.76 28.66 34.59 36.52 24.53 20.75 20.69 41.86 28.47 39.25 37.18 42.88 27.99 27.69 51.41 18.54 25.86 30.93 22 I3_SR1 SilentIntronRegion 0 25.29 21.38 27.56 52.17 28.47 29.62 19.36 25.99 28.56 20.00 13.60 14.40 31.93 23.92 28.70 29.85 33.31 26.30 24.03 32.19 18.20 18.46 24.03 23 I3_AR1 ActiveIntronRegion 0 218.50 80.53 77.75 166.52 143.02 97.36 67.30 70.40 69.68 43.42 50.47 46.84 83.21 47.48 83.15 67.70 82.73 35.16 43.00 131.23 20.08 56.61 59.70 24 E4_Aa NovelBoundary 0 660.56 157.14 179.30 337.22 239.64 181.83 96.63 150.37 101.10 84.96 47.91 18.01 68.34 58.10 60.94 150.64 66.01 126.81 40.28 116.14 40.65 82.60 121.22 25 ER4a ExonRegion 0 298.74 82.04 121.28 111.53 104.43 73.63 63.19 52.68 47.03 21.48 56.14 19.19 54.81 75.15 122.46 103.49 102.72 61.11 82.06 73.07 40.16 55.57 71.31 26 E4_Da NovelBoundary 0 43.56 37.36 64.28 151.36 54.24 54.74 12.01 51.59 43.89 61.51 38.06 0.00 13.47 26.84 49.20 52.98 52.36 73.83 30.59 74.34 51.58 50.82 36.79 27 E4a_E5a KnownJunction 0 381.10 135.83 204.84 226.24 117.15 141.79 67.08 77.01 80.93 40.19 58.96 26.56 25.97 64.63 146.86 132.02 94.44 95.26 77.74 122.15 56.65 49.23 78.19 28 I4 Intron 0 26.38 8.44 1.08 7.23 11.11 9.79 5.50 0.00 0.00 1.01 2.29 11.03 0.00 5.61 10.93 8.81 17.62 6.55 13.22 12.62 7.84 8.65 6.97 29 I4_AR1 ActiveIntronRegion 0 26.99 8.64 1.11 7.40 11.34 10.02 5.63 0.00 0.00 1.04 2.35 11.29 0.00 5.74 11.19 9.02 18.04 6.69 13.54 12.92 8.03 8.85 7.13 30 E5_Aa NovelBoundary 0 59.71 18.09 43.40 68.29 7.72 36.91 7.33 18.98 23.50 19.58 2.47 0.00 6.66 14.30 24.72 10.00 25.25 44.56 13.93 19.88 7.91 5.88 8.02 31 ER5a ExonRegion 0 201.10 100.00 136.13 102.89 60.57 74.31 39.51 37.50 40.46 25.34 49.12 14.98 29.26 69.63 135.76 91.66 77.65 54.58 46.57 121.31 41.91 42.17 55.66 32 E5_Da NovelBoundary 0 265.16 157.34 146.36 264.00 121.65 112.66 60.46 83.75 77.02 75.99 29.69 19.21 26.13 68.63 85.79 84.93 110.33 141.69 64.85 82.84 40.59 48.56 96.29 33 E5a_E6a KnownJunction 0 80.31 49.66 79.21 34.86 3.99 26.63 10.60 14.87 8.56 12.73 26.06 10.80 12.50 43.62 107.79 62.29 50.21 29.68 0.00 53.18 8.71 21.00 17.50 34 I5 Intron 0 21.71 5.58 4.22 4.11 8.89 22.78 7.46 4.47 1.86 1.98 3.35 3.72 6.26 3.15 9.47 16.32 7.63 15.12 9.66 14.45 2.23 2.41 2.97 35 E6_Aa NovelBoundary 0 40.38 3.35 26.67 14.98 0.00 25.33 8.04 11.25 15.51 10.45 4.95 0.00 6.33 7.12 4.45 24.10 12.90 16.50 29.08 25.69 13.28 0.00 0.00 36 ER6a ExonRegion 0 209.93 115.13 120.48 107.71 95.17 66.30 32.67 51.56 37.38 32.63 72.32 17.05 35.57 82.56 140.33 111.80 102.78 53.39 55.13 132.47 68.15 49.07 47.62 37 E6_Da NovelBoundary 0 29.63 39.01 41.87 57.64 27.67 49.86 27.07 45.84 37.38 22.16 9.48 13.05 6.82 25.49 32.63 39.73 11.97 75.69 43.30 61.17 22.30 11.70 19.97 38 E6a_E7a KnownJunction 0 398.00 168.85 166.08 204.20 157.98 100.23 37.49 91.96 71.58 58.45 88.81 19.96 21.91 85.53 168.37 127.40 96.31 73.91 72.47 139.53 65.79 60.19 54.55 39 I6 Intron 0 27.56 31.47 25.05 31.43 22.59 34.83 9.78 17.22 22.01 18.03 8.84 3.76 13.88 11.53 22.09 37.63 18.58 28.11 29.13 32.93 19.38 7.33 12.39 40 I6_AR1 ActiveIntronRegion 0 27.93 31.91 25.36 31.87 22.88 35.32 9.92 17.47 22.31 18.27 8.95 3.81 14.07 11.69 22.40 38.16 18.84 28.49 29.54 33.37 19.65 7.43 12.57 41 E7_Aa NovelBoundary 0 304.05 176.42 93.49 113.87 141.51 223.96 69.87 53.81 77.69 39.57 34.48 6.15 6.33 56.10 99.88 81.35 63.02 127.26 85.08 113.07 38.73 32.45 40.38 42 ER7a ExonRegion 0 457.41 198.04 219.53 273.84 130.51 96.27 65.65 109.94 91.98 83.40 79.38 28.35 37.48 87.47 180.01 172.19 126.06 142.26 97.66 139.86 80.68 86.53 104.00 43 E7_Da NovelBoundary 0 69.86 63.34 26.70 67.26 70.71 109.82 50.12 44.36 54.28 16.63 12.63 6.30 12.66 17.72 15.20 19.99 35.34 44.44 25.32 36.82 17.17 11.21 32.86 44 E7a_E8a KnownJunction 0 482.97 195.82 217.38 283.81 134.04 66.16 91.90 88.64 68.43 64.44 80.81 17.71 60.55 92.47 144.14 97.50 94.62 72.17 52.52 128.47 41.33 103.61 76.74 45 E7a_E9a NovelJunction 0 6.74 0.00 14.61 11.79 0.00 5.79 5.96 4.93 1.79 0.00 5.16 0.00 0.00 4.59 4.45 12.56 4.11 4.15 0.00 2.49 0.00 10.65 3.50 46 I7 Intron 0 50.43 54.98 34.42 83.89 42.38 61.35 25.22 34.82 35.82 29.52 17.68 14.45 28.22 11.69 19.88 42.62 25.02 34.44 36.54 44.60 14.29 20.91 22.66 47 I7_AR1 ActiveIntronRegion 0 52.13 58.94 42.31 101.27 44.76 59.79 27.45 41.14 44.14 36.31 21.06 15.60 33.73 13.75 21.76 49.20 28.18 38.90 38.64 53.11 14.88 25.99 25.78 48 I7_AR2 ActiveIntronRegion 0 46.16 44.02 11.68 33.97 36.02 66.72 18.96 16.73 11.90 9.97 7.97 11.13 12.31 5.78 14.57 23.68 16.02 21.73 30.71 20.13 12.77 6.27 13.70 49 E8_Aa NovelBoundary 0 64.68 104.26 11.74 55.90 42.95 33.16 38.24 17.83 13.11 11.87 9.16 0.00 6.01 9.65 10.01 20.93 9.35 33.08 58.07 21.41 5.68 14.39 23.39 50 E8_Da NovelBoundary 1 22.82 35.13 7.98 21.38 11.80 16.01 10.07 4.89 11.72 5.00 21.95 0.00 35.22 7.24 8.90 23.41 4.39 14.43 31.91 30.62 15.26 5.76 15.79 51 E8a_E9a KnownJunction 0 486.16 306.79 191.18 242.16 168.08 155.02 66.33 108.97 91.06 51.01 69.49 19.06 13.47 82.11 227.70 124.67 95.93 84.86 65.88 116.27 41.45 68.77 69.91 52 ER8a ExonRegion 0 421.73 227.10 235.27 299.53 137.59 109.38 78.88 108.84 95.18 70.15 87.85 16.62 22.39 80.16 168.93 109.39 109.14 63.60 52.10 131.16 46.92 87.58 73.79 53 I8 Intron 0 53.86 21.41 21.03 48.56 29.94 27.35 17.13 15.82 9.08 11.62 8.48 3.52 7.50 8.64 12.26 17.28 19.55 11.69 18.87 16.10 4.59 11.20 10.63 54 I8_AR2 ActiveIntronRegion 0 63.73 25.33 24.88 57.46 35.42 32.36 20.27 18.71 10.75 13.75 10.03 4.16 8.88 10.23 14.51 20.44 23.13 13.84 22.32 19.05 5.43 13.25 12.58 55 E9_Aa NovelBoundary 0 136.69 113.66 37.14 64.99 82.09 70.64 46.37 16.43 20.46 14.85 10.06 12.60 6.33 7.36 26.70 16.66 17.86 9.91 39.06 12.91 8.46 11.14 6.66 56 ER9a ExonRegion 0 549.33 287.71 299.68 414.07 296.89 221.32 107.18 158.63 125.71 86.15 82.90 33.91 75.93 112.71 238.23 198.21 141.06 115.20 103.24 165.41 55.04 90.54 111.72 57 E9_Da NovelBoundary 0 57.79 30.26 18.95 23.94 23.17 16.64 9.76 26.78 6.11 8.81 2.68 18.46 0.00 2.47 0.00 0.00 8.42 4.10 4.80 10.74 2.66 0.00 0.00 58 E9a_E10a KnownJunction 0 1254.22 448.54 424.44 630.36 471.73 319.65 133.72 255.69 154.74 97.29 120.35 63.17 87.82 138.80 255.39 366.91 187.66 150.77 196.24 226.33 66.84 175.19 158.95 59 E10_Aa NovelBoundary 0 165.81 105.31 22.26 35.49 52.97 46.90 40.98 23.12 9.81 10.15 2.53 0.00 8.28 12.18 9.39 53.66 42.45 16.21 62.87 12.85 3.15 6.06 8.37 60 ER10a ExonRegion 0 325.29 231.61 292.50 432.28 163.74 127.77 61.87 149.87 133.55 92.68 80.05 33.17 47.18 101.72 188.19 177.39 129.90 108.85 110.41 151.90 63.66 128.02 84.46 61 E10_Da NovelBoundary 0 25.19 19.08 20.11 33.36 0.00 12.83 6.18 11.25 2.78 7.90 2.63 0.00 20.45 0.00 13.35 7.43 13.09 0.00 16.38 5.11 2.66 0.00 0.00 62 E10a_E11a KnownJunction 0 312.80 261.93 151.33 241.66 152.72 149.69 78.30 122.11 91.06 102.99 81.60 24.61 6.49 43.50 141.91 71.43 106.87 41.33 62.03 104.25 55.17 47.70 38.93 63 I10 Intron 0 6.61 8.47 3.80 14.80 6.96 9.62 3.44 1.34 0.96 3.56 3.02 1.86 2.01 2.39 4.88 7.73 13.74 5.28 13.26 3.32 0.00 0.00 6.11 64 I10_AR1 ActiveIntronRegion 0 6.75 8.64 3.88 15.11 7.11 9.82 3.52 1.37 0.98 3.62 3.08 1.89 2.05 2.42 4.99 7.89 14.03 5.37 13.54 3.39 0.00 0.00 6.24 65 ER11a ExonRegion 0 315.97 168.29 134.58 247.46 90.63 66.44 31.00 112.72 80.51 66.33 71.94 16.96 45.55 47.79 118.21 80.93 80.24 52.35 69.99 82.24 32.86 93.76 42.44