Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SIK2 Gene 0 39.73 42.55 26.02 32.68 32.72 50.99 21.46 29.59 39.18 44.95 60.75 23.78 42.46 65.94 46.34 47.81 76.19 47.39 35.47 23.62 92.16 90.30 81.93 2 304987 Transcript 0 21.37 38.65 17.43 23.82 20.13 39.12 16.21 28.46 42.44 43.52 101.29 42.32 69.60 102.87 55.32 81.99 132.61 65.87 52.52 29.53 140.94 122.33 107.78 3 IG37_AR1 ActiveIntergenicRegion 0 9.22 3.83 15.99 4.68 7.59 1.40 3.40 3.81 2.98 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.53 0.00 8.38 12.69 9.77 4 IG37_AR2 ActiveIntergenicRegion 0 19.42 3.89 19.13 7.94 17.33 3.67 6.50 1.43 6.23 1.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 10.25 28.54 21.96 5 IG37_AR3 ActiveIntergenicRegion 0 12.51 4.07 19.61 6.81 12.89 3.67 3.85 0.00 8.08 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.39 8.81 19.13 17.35 6 IG37_AR4 ActiveIntergenicRegion 0 10.58 4.07 17.02 4.39 18.73 2.04 2.65 1.54 8.65 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 2.20 12.50 15.66 7 IG37_SR1 SilentIntergenicRegion 0 10.41 4.29 18.31 5.88 11.73 1.03 3.49 5.30 2.91 4.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.30 0.95 3.40 10.93 7.78 8 ER1a ExonRegion 0 2.32 10.62 3.16 2.35 4.80 5.75 1.23 7.16 7.57 7.66 24.41 3.54 14.52 26.93 13.82 13.16 30.71 11.45 10.49 8.35 29.73 19.73 18.56 9 E1a_E2a KnownJunction 0 6.22 48.41 7.13 4.36 3.99 0.00 0.00 2.55 14.50 9.94 28.01 6.30 19.64 40.91 19.28 21.28 70.50 18.20 40.66 8.44 58.50 34.84 40.29 10 I1_AR3 ActiveIntronRegion 0 8.60 7.81 10.21 22.83 5.91 2.71 9.20 8.39 5.34 2.92 4.17 7.62 6.11 0.91 2.57 2.14 3.77 1.10 1.21 2.23 2.31 2.81 1.63 11 I1_SR4 SilentIntronRegion 0 2.72 3.49 10.68 21.81 2.68 5.50 14.56 4.69 5.12 2.29 0.00 4.33 4.69 1.62 0.00 0.00 3.30 0.00 0.00 0.30 0.00 0.00 5.87 12 I1_AR4 ActiveIntronRegion 0 3.70 1.74 11.60 18.01 0.76 5.37 13.76 7.47 5.56 3.15 0.00 7.27 4.69 0.75 2.07 0.00 0.94 1.19 0.00 1.82 0.00 0.00 5.87 13 ER2a ExonRegion 0 17.20 64.64 10.97 18.85 11.59 24.11 12.81 21.92 41.88 29.73 57.87 23.16 63.34 66.08 34.64 29.26 93.47 25.69 26.95 24.62 57.88 84.12 45.68 14 E2a_E3a KnownJunction 1 10.30 65.05 17.86 32.83 18.34 34.87 15.68 18.98 48.44 51.33 75.49 43.51 121.26 102.24 43.51 52.72 144.93 26.24 24.66 28.76 63.75 116.34 55.23 15 ER3a ExonRegion 1 15.68 57.51 19.03 26.51 22.45 25.62 8.11 24.01 50.04 53.12 71.91 67.58 104.57 90.67 33.73 48.11 110.79 30.66 27.52 31.62 59.64 129.15 67.31 16 E3a_E4a KnownJunction 0 6.08 41.31 19.87 23.97 41.09 36.97 14.93 31.50 51.53 59.12 71.49 96.18 100.32 107.42 46.85 57.25 118.65 23.63 56.85 39.82 72.22 154.12 98.68 17 I3_AR3 ActiveIntronRegion 0 21.89 12.88 6.05 7.72 10.44 4.06 7.25 11.76 8.92 5.01 1.07 2.63 11.32 1.44 4.87 6.94 5.19 2.58 3.61 4.67 1.68 2.28 5.94 18 I3_AR4 ActiveIntronRegion 0 18.02 8.57 10.80 9.89 9.58 2.45 6.64 10.91 13.67 7.70 1.02 8.20 4.99 1.69 3.07 6.06 3.91 3.11 2.62 1.17 1.32 4.39 5.97 19 I3_AR7 ActiveIntronRegion 0 14.89 6.64 0.92 4.08 8.74 3.69 3.33 1.29 5.09 0.86 0.49 5.76 0.97 0.34 5.27 3.73 1.66 0.00 2.40 2.14 0.55 0.52 2.21 20 I3_AR9 ActiveIntronRegion 1 2.36 5.13 0.49 2.82 3.16 0.73 9.15 2.39 1.33 0.91 0.00 4.49 17.21 0.40 3.11 2.37 2.51 0.00 2.02 1.73 0.87 3.62 2.73 21 I3_AR12 ActiveIntronRegion 0 13.91 5.13 9.58 9.15 5.65 2.78 5.23 7.16 6.77 5.50 1.45 2.04 1.79 2.97 5.98 6.41 5.25 2.99 1.98 1.41 4.91 2.99 8.40 22 I3_AR13 ActiveIntronRegion 0 16.93 0.00 0.00 0.00 2.68 0.00 1.32 0.00 0.00 0.00 5.80 8.66 0.00 1.62 2.90 5.94 6.60 0.00 6.37 0.00 4.41 6.25 11.75 23 I3_AR14 ActiveIntronRegion 0 25.40 0.00 0.00 0.00 4.46 0.00 1.10 0.00 0.00 0.00 9.34 7.94 0.00 0.00 3.87 9.91 11.00 0.00 11.15 0.00 9.55 7.99 21.05 24 I3_SR9 SilentIntronRegion 0 15.61 4.72 9.23 7.75 6.07 4.30 3.51 3.66 5.49 4.35 1.15 1.44 2.28 0.56 2.82 3.01 3.11 1.64 2.85 1.11 1.38 1.95 10.20 25 I3_AR15 ActiveIntronRegion 0 10.05 12.20 7.35 7.33 14.05 11.00 10.10 5.19 9.88 6.59 0.00 12.99 8.79 3.25 2.90 5.94 6.60 0.00 0.00 3.72 0.00 2.08 16.89 26 I3_AR17 ActiveIntronRegion 0 7.29 18.30 6.81 7.87 9.22 5.71 12.50 8.26 10.02 4.97 0.00 4.33 11.46 1.62 1.29 8.26 6.60 0.00 0.00 2.13 3.18 8.33 20.56 27 I3_AR18 ActiveIntronRegion 0 13.76 20.34 6.74 12.67 12.31 5.50 10.59 8.47 10.99 6.65 0.58 0.87 14.07 0.97 2.90 5.94 5.94 0.00 1.59 4.04 4.41 8.13 20.85 28 I3_AR19 ActiveIntronRegion 0 13.30 18.59 7.00 16.35 10.70 3.93 8.70 8.64 11.12 9.01 1.93 0.00 18.76 0.00 4.14 4.25 3.30 0.00 6.37 4.26 4.41 6.25 18.88 29 I3_AR20 ActiveIntronRegion 0 13.61 13.07 9.02 20.05 12.23 3.54 5.20 9.38 12.35 10.65 1.93 0.00 17.76 0.00 8.29 3.61 1.89 0.00 6.37 2.74 4.41 7.89 23.91 30 I3_AR21 ActiveIntronRegion 0 19.58 9.15 11.33 28.73 12.93 3.67 3.09 10.51 13.90 12.23 2.09 0.00 10.55 0.00 9.91 4.46 12.10 0.00 6.37 2.13 3.67 4.34 18.84 31 I3_AR22 ActiveIntronRegion 1 17.32 9.24 14.15 26.39 10.95 3.67 1.69 9.27 17.07 9.80 3.16 2.76 9.81 0.00 11.08 5.94 13.20 0.17 4.34 1.55 2.20 4.17 14.68 32 I3_AR23 ActiveIntronRegion 1 16.49 12.09 13.67 28.91 12.25 1.45 1.32 8.37 22.75 11.71 1.93 6.38 13.82 1.62 13.28 5.79 12.86 2.72 0.00 4.48 5.57 5.15 15.61 33 I3_AR24 ActiveIntronRegion 0 14.14 8.37 4.64 12.81 7.73 3.43 5.18 8.59 10.19 6.74 0.11 2.48 8.00 1.19 6.33 4.71 6.34 1.84 0.54 2.18 3.15 4.85 7.87 34 I3_AR1 ActiveIntronRegion 1 4.01 0.11 10.25 7.39 2.25 7.82 3.48 4.46 9.62 6.28 0.00 0.00 18.02 2.56 2.90 2.35 13.72 0.00 0.00 6.16 3.60 3.07 6.49 35 ER4a ExonRegion 1 15.33 61.41 15.43 31.09 18.96 24.80 19.07 28.60 42.12 50.12 76.78 67.11 104.92 99.23 43.61 52.91 95.16 29.36 45.30 26.62 107.75 140.51 79.60 36 E4a_E5a KnownJunction 1 17.48 67.55 8.81 16.31 11.97 32.71 12.19 32.20 33.88 42.63 108.82 182.16 109.08 142.21 47.47 75.54 73.49 30.30 32.19 33.24 116.51 78.99 83.57 37 I4_AR2 ActiveIntronRegion 0 15.67 5.99 5.53 8.71 10.48 3.41 5.09 4.33 4.88 5.42 3.14 3.84 6.79 2.41 6.98 4.63 9.44 2.99 1.69 5.10 4.17 5.43 7.38 38 I4_SR3 SilentIntronRegion 0 16.80 9.26 6.87 11.85 14.07 2.24 6.45 6.08 6.28 6.16 2.46 5.65 4.63 1.88 8.20 4.73 10.00 2.53 3.68 3.85 3.13 4.88 4.28 39 ER5a ExonRegion 1 25.84 48.43 8.23 17.14 22.09 28.15 17.30 19.12 34.07 35.65 90.06 61.93 90.42 97.25 30.22 70.97 109.85 41.49 54.84 21.84 128.86 110.74 108.44 40 E5a_E6a KnownJunction 0 33.41 49.60 5.53 10.79 23.60 37.76 17.62 18.81 33.42 34.71 90.39 32.86 41.23 85.53 37.33 40.76 117.34 58.57 40.19 31.32 109.41 122.83 119.34 41 ER6a ExonRegion 1 21.06 29.22 11.05 14.86 25.27 34.52 11.99 14.29 29.78 31.05 90.39 41.03 51.63 103.22 33.50 83.15 132.30 49.28 31.06 27.64 120.55 97.22 96.91 42 E6a_E7a KnownJunction 0 20.30 52.56 9.20 32.70 28.18 47.30 16.83 25.63 30.44 33.42 97.76 68.87 65.42 132.20 44.63 90.40 145.11 75.94 46.97 29.91 137.64 132.63 123.26 43 ER7a ExonRegion 0 17.88 36.56 16.47 34.10 32.74 43.97 25.66 18.36 38.64 45.31 128.30 40.08 64.34 103.19 42.38 97.95 157.34 79.16 63.46 35.34 159.25 162.70 139.18 44 E7a_E8a KnownJunction 1 36.01 14.80 16.68 40.29 38.03 33.28 29.28 27.97 52.89 48.62 156.88 18.16 79.38 121.31 90.24 133.30 150.44 87.92 123.11 60.34 158.46 241.44 196.85 45 ER8a ExonRegion 0 25.36 33.24 11.75 22.99 26.20 42.02 16.16 29.53 41.82 44.89 113.56 28.61 49.63 100.88 39.97 91.44 142.00 77.81 58.29 31.41 149.41 142.85 116.12 46 E8a_E9a KnownJunction 1 38.08 32.23 10.67 27.94 20.20 34.30 19.17 21.19 51.33 49.00 98.60 51.32 38.63 103.01 19.41 108.35 119.78 76.81 47.34 20.52 171.06 106.85 108.92 47 ER9a ExonRegion 0 26.35 26.47 15.80 18.87 21.23 29.41 18.87 26.97 35.83 37.92 114.98 19.94 43.40 104.15 41.83 85.49 137.36 70.92 51.29 24.99 160.14 107.98 98.72 48 E9a_E10a KnownJunction 0 12.59 23.29 23.95 27.10 19.69 21.12 21.29 27.60 37.18 34.57 97.24 18.46 26.30 92.35 61.31 64.34 134.46 72.58 49.79 17.13 133.62 106.67 100.73 49 I9_AR2 ActiveIntronRegion 0 16.57 1.82 5.72 9.99 13.75 1.85 3.70 4.03 5.33 4.78 5.19 0.00 12.19 4.90 13.15 5.65 6.61 2.05 4.28 2.14 4.19 6.76 14.78 50 I9_SR2 SilentIntronRegion 0 12.57 5.10 7.02 10.63 12.52 3.46 5.88 2.84 4.28 4.84 5.62 2.10 7.12 5.61 7.12 6.07 5.14 2.57 2.15 1.54 7.81 10.56 12.74 51 I9_SR3 SilentIntronRegion 0 3.26 3.36 4.47 5.72 5.15 1.81 3.77 4.46 4.79 5.10 7.42 2.56 5.03 5.59 4.65 6.35 3.75 3.20 1.62 0.97 9.68 10.07 16.50 52 ER10a ExonRegion 0 12.56 21.14 21.81 27.63 10.12 30.31 13.49 26.25 40.80 43.88 98.42 19.79 35.10 102.89 53.91 94.03 118.62 85.18 49.09 29.03 141.27 95.31 130.23 53 E10a_E11a KnownJunction 0 14.22 26.44 17.83 17.08 14.69 55.76 17.93 37.05 53.79 65.27 119.82 22.96 33.93 100.30 67.50 115.10 141.28 98.41 36.80 32.60 154.69 104.53 90.14 54 I10 Intron 0 5.01 4.81 4.13 6.12 3.45 1.18 1.99 4.99 3.76 3.31 6.86 2.69 5.43 6.40 4.17 13.75 12.79 7.02 5.14 3.43 10.19 12.11 23.07 55 I10_AR1 ActiveIntronRegion 0 5.03 4.83 4.14 6.14 3.47 1.19 2.00 5.01 3.78 3.32 6.89 2.70 5.46 6.43 4.19 13.81 12.84 7.05 5.16 3.45 10.23 12.16 23.16 56 E11_Aa NovelBoundary 0 3.48 12.30 2.87 9.09 8.66 16.24 4.50 2.18 2.95 2.71 9.53 6.00 6.33 9.83 0.00 3.50 31.98 0.00 4.71 3.26 5.37 17.21 8.71 57 ER11a ExonRegion 0 28.92 29.16 21.61 24.03 16.32 43.14 19.59 29.86 48.98 53.02 122.78 32.16 62.80 120.14 73.91 116.61 162.73 93.96 61.27 31.41 164.59 125.64 132.43 58 E11_Da NovelBoundary 0 12.59 0.00 0.00 0.00 0.00 8.69 0.00 4.19 1.27 1.53 6.84 17.56 20.13 4.94 0.00 0.00 8.51 2.07 8.38 0.00 8.22 2.45 3.93 59 E11a_E12a KnownJunction 0 12.82 42.36 29.36 37.39 30.90 69.28 24.38 37.25 27.00 36.61 167.25 30.16 65.58 159.69 96.79 130.65 192.05 90.24 63.63 39.95 148.57 151.25 176.87 60 ER12a ExonRegion 0 28.81 33.11 25.79 23.04 18.27 53.61 17.33 45.06 47.08 48.42 126.76 34.69 98.66 124.14 76.55 101.85 162.63 85.59 62.83 28.00 178.53 138.63 140.55 61 E12a_E13a KnownJunction 0 44.90 39.07 20.61 19.08 10.70 96.88 27.91 39.51 47.31 46.79 121.03 25.66 95.61 94.89 106.06 78.01 165.78 96.25 61.46 20.07 184.96 114.20 119.42 62 I12 Intron 0 5.51 2.72 4.37 3.00 6.03 2.97 3.82 3.80 4.53 4.09 7.48 4.59 4.25 7.20 3.76 5.23 9.52 5.43 1.57 1.80 9.30 18.91 11.57 63 I12_AR1 ActiveIntronRegion 0 5.52 2.73 4.38 3.01 6.04 2.98 3.83 3.82 4.55 4.10 7.50 4.60 4.26 7.22 3.77 5.24 9.55 5.45 1.57 1.80 9.32 18.96 11.60 64 ER13a ExonRegion 0 27.11 30.87 25.71 26.40 19.89 46.29 19.91 38.07 58.24 43.89 136.80 36.04 109.73 115.49 69.08 80.89 157.13 94.63 60.23 34.71 231.43 143.88 134.27 65 E13a_E14a KnownJunction 0 29.34 41.24 33.80 25.14 15.53 61.56 10.33 57.87 64.29 68.20 142.40 55.97 93.99 142.80 124.61 160.04 198.78 130.70 95.91 36.62 242.29 215.73 192.66 66 ER14a ExonRegion 0 13.21 18.50 22.38 23.33 8.75 45.84 8.42 46.05 65.42 59.70 129.46 33.65 106.80 135.54 96.91 133.68 222.27 121.33 95.49 43.94 271.10 183.12 160.05 67 E14_Da NovelBoundary 0 0.00 0.00 4.97 3.36 0.00 0.00 2.08 9.20 2.92 2.79 5.00 0.00 6.82 2.12 10.38 15.21 8.70 9.45 0.00 2.88 15.94 8.51 31.76 68 E14a_E15a KnownJunction 0 14.37 30.65 25.93 28.73 11.04 38.84 9.23 41.12 63.54 51.39 130.66 44.56 92.53 112.43 69.60 112.62 180.36 85.85 74.17 35.60 297.27 103.12 77.00 69 ER15a ExonRegion 0 45.85 45.39 29.00 35.89 37.18 56.20 23.27 30.74 39.03 46.19 49.10 20.89 35.67 56.18 45.61 37.94 60.28 41.89 31.16 22.38 78.17 82.47 74.63