Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CUL5 Gene 0 63.29 155.49 49.90 108.24 77.38 129.01 62.78 44.31 40.83 41.25 85.60 86.61 139.90 93.75 51.59 69.45 85.28 39.55 32.64 99.58 33.22 98.68 49.04 2 299351 Transcript 1 13.16 42.11 19.02 21.17 15.54 74.62 63.60 18.30 18.47 21.16 70.72 30.29 24.98 133.73 31.27 87.36 106.49 67.85 25.36 97.86 68.73 79.77 88.47 3 393094 Transcript 0 5.82 15.25 5.82 8.52 5.35 29.34 23.17 6.91 7.10 8.03 23.68 9.74 11.73 50.35 7.25 29.72 43.74 25.41 5.57 32.45 23.14 29.17 32.30 4 IG9_SR1 SilentIntergenicRegion 0 6.68 44.77 2.22 10.54 7.98 38.05 22.21 4.37 2.93 3.30 6.11 7.15 3.36 1.41 0.00 2.20 1.88 4.51 6.71 31.90 0.00 0.00 0.00 5 IG9_AR1 ActiveIntergenicRegion 0 5.49 75.12 14.23 36.20 18.50 99.96 43.09 8.87 13.20 14.07 11.47 15.48 7.10 3.62 1.18 3.14 6.24 20.20 18.97 68.73 0.00 0.00 0.00 6 IG9_SR2 SilentIntergenicRegion 0 3.82 57.07 22.39 41.24 16.84 110.29 35.98 12.66 10.73 19.04 16.28 4.82 3.19 5.28 1.99 10.01 12.24 53.64 36.93 77.35 0.00 0.35 0.00 7 IG9_AR2 ActiveIntergenicRegion 0 10.49 90.88 26.19 63.84 37.18 158.80 48.56 18.14 15.98 24.33 13.80 18.38 4.14 6.63 1.07 9.70 12.21 39.25 43.11 80.05 0.00 0.82 0.29 8 IG9_SR3 SilentIntergenicRegion 0 10.43 97.71 27.47 43.78 39.11 157.81 47.71 9.71 8.63 16.02 8.88 9.26 6.39 4.17 0.83 5.12 9.65 24.06 33.23 51.63 0.00 0.50 0.35 9 IG9_AR3 ActiveIntergenicRegion 0 27.99 118.60 62.33 62.39 28.48 131.52 28.82 24.73 15.30 27.80 13.35 7.35 2.36 2.62 2.01 5.74 6.76 27.01 30.94 74.78 0.13 0.37 0.17 10 ER1a ExonRegion 1 6.16 14.18 14.83 9.51 6.63 30.79 12.56 9.57 11.11 9.35 44.67 5.36 8.72 55.73 25.83 49.70 58.33 55.40 20.70 55.81 46.22 22.69 32.07 11 E1a_E3b KnownJunction 1 20.15 70.05 23.21 32.83 24.45 118.45 114.65 27.03 25.84 32.96 96.76 55.22 41.23 211.73 36.71 125.01 154.65 80.30 30.02 139.91 91.25 136.86 144.86 12 I1_AR2 ActiveIntronRegion 0 16.50 10.69 12.32 22.32 11.01 7.23 8.49 5.02 2.74 2.12 2.97 6.06 6.91 0.64 6.83 12.01 9.19 10.44 8.79 8.45 0.34 1.20 2.45 13 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 1 11.64 30.50 11.64 17.04 10.70 58.68 46.34 13.83 14.20 16.06 47.36 19.48 23.45 100.70 14.51 59.44 87.47 50.81 11.15 64.89 46.28 58.34 64.61 15 ER3b ExonRegion 1 22.08 46.79 34.12 41.57 18.29 83.61 59.34 31.19 27.55 30.15 109.38 43.18 128.91 145.29 32.50 107.95 177.07 94.68 32.26 135.29 93.79 65.32 91.25 16 E3a_E4a KnownJunction 1 20.45 18.48 20.93 45.82 15.45 56.62 28.40 33.76 27.84 29.28 141.67 87.93 424.16 162.05 64.40 82.80 179.62 73.83 26.17 148.86 110.77 65.58 70.08 17 ER4a ExonRegion 1 23.64 25.22 19.74 47.76 14.82 79.70 31.75 36.25 32.32 24.52 132.11 105.99 264.80 203.36 50.66 120.49 182.47 68.02 45.74 143.00 85.70 117.68 116.38 18 E4a_E5a KnownJunction 1 2.89 22.04 19.48 47.68 22.24 57.13 43.72 18.77 27.08 13.75 99.45 79.68 268.00 166.70 21.14 116.29 126.69 54.39 9.32 104.63 66.60 67.30 77.25 19 ER5a ExonRegion 1 25.39 71.07 20.37 61.98 43.16 115.95 72.96 31.19 35.73 26.05 130.76 141.14 399.87 147.08 37.72 96.87 137.50 50.88 31.94 137.10 60.58 89.14 63.81 20 E5a_E6a KnownJunction 1 10.15 70.58 24.25 76.08 40.75 137.08 45.58 32.98 37.90 39.70 146.51 243.68 467.83 181.82 74.66 121.42 146.14 36.19 44.61 140.62 34.41 118.06 57.45 21 ER6a ExonRegion 1 18.29 44.74 31.72 76.40 33.99 85.65 47.93 31.85 43.73 43.96 144.89 149.31 444.93 146.09 43.80 106.98 143.82 44.67 37.60 145.71 43.22 96.72 49.78 22 E6a_E7a KnownJunction 1 12.15 62.88 58.60 99.65 42.78 111.36 77.68 40.79 47.48 43.41 127.19 200.47 442.18 150.04 26.70 81.09 129.69 34.78 44.05 164.01 23.60 119.83 36.71 23 ER7a ExonRegion 1 24.31 59.49 35.81 99.82 50.34 122.66 64.14 46.51 46.11 39.69 125.02 184.03 395.99 143.71 44.81 119.92 114.99 55.53 49.02 156.79 34.72 117.98 56.60 24 E7a_E8a KnownJunction 0 43.56 57.75 30.48 118.47 64.69 123.28 70.00 51.96 50.49 33.15 132.56 125.59 365.72 158.40 54.52 92.20 76.11 32.38 44.33 158.58 38.49 132.75 45.84 25 ER8a ExonRegion 0 25.48 58.12 23.28 102.54 54.41 117.70 52.62 40.48 39.71 34.32 134.85 161.26 353.20 150.78 45.78 88.72 135.38 49.36 30.99 161.15 33.63 112.64 42.96 26 E8_Da NovelBoundary 0 6.96 0.00 1.30 12.75 3.74 0.00 7.64 6.82 1.24 0.00 2.47 11.85 6.82 2.41 4.45 12.22 0.00 2.11 16.47 14.19 0.00 0.00 0.00 27 E8a_E9a KnownJunction 0 13.63 61.04 17.15 83.04 45.50 159.00 28.35 46.04 31.63 36.59 92.34 161.15 288.29 154.16 45.99 98.86 124.17 37.81 41.22 127.00 37.99 111.14 41.49 28 ER9a ExonRegion 0 15.96 41.58 22.86 80.47 41.56 125.89 47.49 40.67 42.10 29.95 142.25 160.47 220.53 119.18 31.20 110.06 151.49 46.37 44.39 144.30 42.32 103.11 45.49 29 E9a_E10a KnownJunction 1 20.00 41.11 26.55 72.78 46.01 162.41 69.07 41.28 40.34 33.60 203.58 172.71 287.97 130.50 28.43 77.33 238.43 39.96 30.49 171.30 52.94 135.39 36.62 30 ER10a ExonRegion 0 20.45 59.59 27.88 85.07 32.21 89.41 51.82 36.88 39.90 28.66 125.90 166.80 296.76 131.65 38.16 97.01 143.98 55.45 34.87 163.83 42.12 94.20 60.97 31 E10a_E11a KnownJunction 0 10.30 64.26 26.76 77.08 40.15 108.57 54.45 30.31 42.07 30.92 117.29 204.97 186.84 92.47 47.72 95.70 120.90 47.80 48.57 145.03 45.10 70.79 56.94 32 ER11a ExonRegion 0 25.91 49.69 29.27 65.14 55.52 131.51 47.92 27.38 48.81 37.75 141.57 180.27 226.68 134.83 37.04 87.71 148.17 47.85 29.46 149.51 48.73 78.11 53.24 33 E11a_E12a KnownJunction 0 25.78 60.45 26.29 79.41 69.52 124.30 38.95 20.99 46.87 35.78 109.19 194.31 260.21 120.43 51.05 91.00 80.04 77.81 34.35 144.26 67.21 68.52 57.96 34 ER12a ExonRegion 0 27.68 64.92 27.56 82.70 49.11 98.40 42.96 23.40 48.63 29.98 107.94 136.74 223.46 121.18 45.97 94.47 100.04 61.91 33.96 130.02 49.50 81.96 80.51 35 E12a_E13a KnownJunction 0 37.64 128.33 32.58 96.89 62.65 126.97 65.63 24.93 57.29 45.37 147.20 150.65 179.70 124.14 43.51 123.22 119.21 40.21 57.32 101.76 44.85 100.36 90.83 36 ER13a ExonRegion 0 27.50 78.03 25.03 86.99 49.17 129.76 64.05 23.47 49.27 38.60 148.99 136.95 164.57 135.73 43.17 97.01 126.58 56.99 36.07 118.88 60.03 93.35 67.08 37 E13a_E14a KnownJunction 0 24.00 60.91 25.84 127.82 55.60 161.73 91.68 32.08 56.51 37.63 136.03 143.60 216.87 174.05 51.18 139.62 153.34 60.65 50.92 123.87 30.33 136.92 102.01 38 ER14a ExonRegion 0 18.79 89.03 29.98 101.21 57.95 121.77 58.81 30.14 43.00 36.39 137.25 112.86 188.24 140.73 42.27 81.94 142.39 51.44 31.61 122.78 37.31 114.28 61.45 39 E14a_E15a KnownJunction 1 34.60 79.72 34.39 99.35 39.39 113.85 80.16 19.88 36.23 34.01 82.92 175.86 147.72 112.31 38.94 47.08 115.85 52.60 36.71 131.16 24.90 107.16 62.14 40 ER15a ExonRegion 0 51.50 137.91 25.78 113.93 59.62 125.97 79.82 30.42 35.67 42.33 146.43 151.85 178.45 145.46 40.13 79.94 151.12 51.71 37.74 121.91 45.09 124.49 52.13 41 E15a_E16a KnownJunction 1 46.08 157.67 35.30 71.72 87.01 152.75 107.40 23.70 37.62 48.35 119.93 163.85 223.69 152.51 17.92 66.48 133.43 36.23 32.57 136.72 31.94 157.25 24.76 42 ER16a ExonRegion 0 35.72 100.72 34.12 96.49 56.62 136.57 80.08 31.30 46.13 47.77 130.90 141.57 165.32 140.48 40.86 107.33 131.57 65.18 37.39 109.11 30.99 105.83 70.45 43 E16a_E17a KnownJunction 1 65.64 75.91 38.32 96.89 124.79 133.22 87.66 40.79 52.37 52.78 152.93 137.89 156.16 153.16 33.01 125.01 158.86 63.13 54.03 139.40 61.22 133.06 117.29 44 ER17a ExonRegion 0 50.93 103.83 46.75 97.71 71.93 137.15 85.88 37.46 52.53 58.61 150.43 111.98 191.10 143.46 48.75 141.10 154.96 80.64 57.45 119.29 63.84 93.45 84.02 45 E17_Da NovelBoundary 0 3.63 12.10 16.38 28.07 12.90 2.67 14.88 7.39 11.92 10.74 14.48 27.16 26.30 12.07 4.45 7.60 25.43 12.02 19.86 26.65 8.71 2.39 11.61 46 E17a_E18a KnownJunction 0 45.05 97.35 40.39 101.59 89.56 168.94 63.15 30.39 48.49 62.91 135.03 90.03 148.85 116.96 53.40 112.11 156.62 68.23 64.94 116.90 65.30 62.76 91.68 47 I17 Intron 0 10.48 16.17 7.26 25.51 11.01 10.75 12.75 7.19 5.78 6.08 10.38 4.77 21.33 9.62 9.97 16.59 13.82 9.50 5.11 22.42 3.69 12.07 11.47 48 I17_SR1 SilentIntronRegion 0 11.97 14.98 5.02 12.59 7.10 9.34 9.65 4.09 3.25 5.21 8.86 4.34 18.21 9.15 7.08 18.89 11.35 9.73 6.48 17.21 4.69 13.16 13.81 49 I17_AR2 ActiveIntronRegion 0 8.73 18.51 10.78 45.17 17.09 13.19 17.71 11.95 9.65 7.57 12.98 5.57 26.64 10.65 14.53 13.89 17.90 9.51 3.32 30.81 2.38 10.93 8.52 50 E18_Aa NovelBoundary 0 34.75 36.44 18.83 67.16 19.95 14.08 10.91 16.06 9.20 12.73 7.11 6.30 46.43 9.30 16.32 12.13 13.00 6.51 0.00 17.45 0.00 24.37 7.51 51 ER18a ExonRegion 0 58.76 96.21 46.46 89.56 63.21 145.04 67.91 32.86 51.15 49.11 121.38 102.52 154.57 127.94 56.15 137.09 152.70 62.39 59.64 134.51 55.30 87.65 82.92 52 E18_Da NovelBoundary 0 14.22 21.25 7.63 24.61 8.66 9.71 8.39 19.47 7.75 6.66 12.21 7.05 29.06 9.71 0.00 27.09 18.05 5.64 7.34 15.28 8.09 11.08 0.00 53 E18a_E19a KnownJunction 0 21.78 89.92 48.58 81.94 93.55 135.94 75.47 23.21 40.71 28.53 83.97 122.14 149.50 99.06 45.37 78.53 102.57 31.50 43.95 108.53 28.60 79.17 60.10 54 ER19a ExonRegion 0 43.87 120.93 49.93 88.86 58.41 139.92 62.82 28.81 41.46 31.09 82.57 76.99 185.26 110.22 61.32 68.07 112.71 37.16 54.95 103.31 32.42 97.34 57.88 55 E19a_E20a KnownJunction 0 34.97 112.35 42.37 66.09 20.29 118.45 48.80 23.29 36.83 25.49 75.55 57.62 111.19 105.01 58.10 52.12 96.12 28.56 20.14 70.69 9.45 114.08 40.80 56 I19 Intron 0 14.51 17.50 6.44 30.75 12.74 10.85 14.82 7.08 6.56 6.13 11.05 8.83 24.92 12.49 8.32 22.79 17.23 19.83 11.93 27.80 9.61 13.12 12.81 57 I19_SR1 SilentIntronRegion 0 15.75 17.47 6.82 30.88 11.75 10.27 14.75 7.49 6.77 5.72 12.68 8.93 25.33 13.46 8.42 25.37 20.84 24.29 12.85 29.55 12.64 12.52 14.91 58 I19_AR1 ActiveIntronRegion 0 9.07 27.02 3.91 20.88 12.61 6.29 14.75 1.10 3.16 3.66 4.14 6.77 22.23 9.46 10.75 21.68 11.32 9.86 10.92 14.59 2.83 7.14 3.78 59 I19_AR2 ActiveIntronRegion 0 11.70 15.71 5.77 32.45 15.97 13.68 15.11 7.01 6.62 7.95 7.30 8.96 24.27 10.06 7.52 14.87 6.95 7.67 9.23 25.03 1.35 16.28 7.99 60 E20_Aa NovelBoundary 0 9.48 31.05 12.57 43.45 24.79 15.67 15.81 13.47 17.62 5.88 7.42 13.20 33.44 11.24 18.54 8.46 0.00 1.62 0.00 26.27 2.41 8.70 0.00 61 ER20a ExonRegion 0 94.12 231.44 67.88 142.51 108.89 155.30 73.20 58.07 45.70 49.68 66.84 74.91 100.71 73.64 61.76 53.35 57.37 25.76 30.36 88.23 20.78 113.97 42.08 62 IG10_AR1 ActiveIntergenicRegion 0 11.91 18.30 3.77 18.28 13.54 7.22 7.70 4.35 5.18 5.78 0.36 2.67 4.86 3.42 4.51 2.79 2.48 0.69 1.79 9.58 0.00 1.55 3.30 63 IG10_AR2 ActiveIntergenicRegion 0 4.63 11.63 2.80 18.21 2.27 3.09 8.16 4.24 4.46 6.38 0.62 1.62 1.60 1.44 3.17 1.65 3.49 4.09 8.05 6.78 0.36 1.32 4.63 64 IG10_SR2 SilentIntergenicRegion 0 6.97 12.83 4.02 16.53 5.98 3.28 9.47 8.40 4.00 4.22 0.62 2.08 5.35 0.49 4.42 6.24 2.71 5.08 6.93 13.62 0.84 1.29 4.21