Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C11orf61 Gene 0 154.69 175.71 98.60 120.02 78.17 147.48 48.24 49.71 45.02 77.72 58.67 25.75 52.19 87.85 63.54 88.87 69.29 85.55 66.72 63.62 53.38 80.72 58.88 2 374979 Transcript 0 43.10 59.41 27.30 38.78 21.86 74.69 21.19 16.55 23.63 31.42 24.84 8.93 22.34 41.07 23.42 39.76 37.81 66.42 27.27 37.44 34.35 19.01 28.49 3 239614 Transcript 0 0.00 15.59 0.00 0.00 0.00 2.90 5.03 2.26 0.00 4.57 2.68 0.00 0.00 15.66 13.35 4.02 8.60 10.94 0.00 8.50 4.94 2.51 0.00 4 ER1a ExonRegion 0 1.83 4.07 3.87 1.89 0.28 13.44 2.35 1.17 4.23 6.84 12.94 0.68 2.99 22.62 9.80 10.25 20.60 14.57 5.93 13.38 22.88 5.21 10.99 5 E1_Da NovelBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 4.11 0.00 1.79 5.80 2.68 0.00 0.00 11.65 5.19 14.78 15.71 28.02 0.00 12.02 8.77 5.69 7.77 6 E1a_E2a KnownJunction 0 2.82 6.58 2.63 4.76 0.00 14.42 1.63 0.00 5.41 5.64 6.95 0.00 0.00 15.01 4.45 4.36 8.79 25.04 4.52 0.00 16.00 0.00 3.50 7 E1a_E2b KnownJunction 0 0.00 15.59 0.00 0.00 0.00 2.90 5.03 2.26 0.00 4.57 2.68 0.00 0.00 15.66 13.35 4.02 8.60 10.94 0.00 8.50 4.94 2.51 0.00 8 I1 Intron 0 14.92 26.32 13.60 22.51 15.66 23.43 16.85 7.97 9.73 13.46 14.99 15.47 41.47 20.19 9.32 23.29 24.83 22.21 13.14 42.73 10.78 16.09 18.27 9 I1_SR1 SilentIntronRegion 0 3.96 6.63 4.06 6.51 2.17 1.51 7.86 3.17 4.08 5.01 7.66 3.68 4.80 9.93 6.25 17.13 17.89 26.99 6.25 28.12 13.44 2.15 12.99 10 I1_AR1 ActiveIntronRegion 0 17.26 21.91 13.32 18.54 6.95 5.89 19.24 3.78 6.50 10.22 15.59 12.78 50.66 16.83 9.21 25.46 31.64 18.97 8.74 47.32 9.95 7.26 14.66 11 I1_AR2 ActiveIntronRegion 1 25.16 35.59 18.86 21.73 3.57 1.53 11.18 8.74 2.81 8.54 17.93 25.74 72.96 9.65 6.45 13.21 35.21 13.76 2.12 37.59 4.77 10.30 9.95 12 I1_AR3 ActiveIntronRegion 0 12.86 35.51 19.42 24.43 4.32 5.36 12.83 11.17 3.23 8.12 15.46 34.97 70.71 8.62 2.90 11.66 24.88 14.92 0.00 36.17 1.86 8.49 6.33 13 I1_AR4 ActiveIntronRegion 0 6.17 37.75 27.97 27.32 5.35 11.96 19.51 10.07 6.93 13.06 12.86 33.32 67.09 10.03 0.63 17.70 19.52 11.73 0.00 35.89 5.27 6.79 9.32 14 I1_AR5 ActiveIntronRegion 0 7.94 42.20 30.48 31.86 13.04 18.57 24.33 5.83 7.41 16.49 13.77 34.09 53.94 11.17 2.90 23.78 33.01 11.55 6.37 50.27 8.54 10.42 16.89 15 I1_SR2 SilentIntronRegion 0 8.00 12.09 20.92 18.19 12.33 5.89 20.29 2.85 4.90 15.30 10.77 17.28 46.50 15.28 10.34 29.84 22.97 17.66 20.80 37.02 4.04 11.49 15.02 16 I1_AR6 ActiveIntronRegion 0 6.75 16.00 6.00 18.61 6.13 5.11 14.24 2.05 3.67 8.00 11.55 7.46 14.43 13.20 6.56 14.22 24.66 13.55 11.11 28.62 8.56 7.06 7.02 17 I1_SR3 SilentIntronRegion 0 4.71 20.87 9.20 14.23 3.89 4.54 12.46 3.08 4.56 7.01 8.09 20.06 37.84 12.05 4.13 15.49 12.97 10.68 8.16 35.86 3.95 4.45 6.56 18 I1_AR7 ActiveIntronRegion 1 4.31 18.68 6.37 13.14 4.56 2.81 14.29 4.38 4.07 3.92 5.60 12.53 46.60 14.82 6.84 11.89 15.18 6.03 5.42 37.45 5.25 2.48 9.72 19 I1_SR4 SilentIntronRegion 0 5.79 9.87 8.97 11.85 4.27 4.79 11.16 3.83 4.53 5.02 13.34 14.18 31.44 14.73 6.16 16.40 21.55 14.77 8.49 39.74 6.53 7.61 10.96 20 I1_AR8 ActiveIntronRegion 0 10.62 12.38 15.34 24.90 7.87 4.79 14.52 7.60 6.91 9.54 20.11 18.18 50.86 17.00 10.67 21.65 27.68 32.31 13.14 53.34 10.91 12.78 17.59 21 I1_SR5 SilentIntronRegion 0 10.88 23.48 5.81 12.32 6.34 6.44 11.81 3.35 4.99 5.20 10.45 12.94 32.32 11.39 4.91 16.62 21.15 17.85 13.01 40.40 8.62 9.04 11.85 22 I1_AR9 ActiveIntronRegion 1 26.88 44.81 16.57 25.94 22.53 7.54 15.13 10.95 6.38 10.27 10.47 17.81 72.99 14.64 11.09 22.13 11.92 11.49 13.37 46.94 5.11 14.06 11.26 23 I1_SR6 SilentIntronRegion 0 5.77 22.66 10.55 18.17 10.19 11.57 10.94 5.52 7.21 7.78 11.57 15.10 32.23 14.93 8.63 23.10 17.76 18.14 13.70 41.11 6.97 12.76 17.32 24 I1_AR10 ActiveIntronRegion 0 17.77 15.55 10.42 11.60 6.72 16.46 8.66 6.98 4.65 13.20 10.08 9.65 47.80 17.12 7.15 29.05 26.72 23.86 13.10 31.31 14.56 8.33 25.71 25 I1_SR7 SilentIntronRegion 0 7.88 27.63 8.93 12.30 10.94 18.43 13.21 6.88 9.11 10.97 12.04 10.85 36.93 11.49 5.86 16.36 15.24 12.25 8.23 32.27 5.65 17.59 14.10 26 I1_AR11 ActiveIntronRegion 0 24.08 50.10 17.13 18.58 16.82 26.04 23.36 10.06 12.73 21.29 20.15 15.51 62.51 18.18 11.38 25.85 20.67 28.20 16.02 63.72 9.97 39.66 20.57 27 I1_AR12 ActiveIntronRegion 1 23.74 25.01 4.07 22.14 12.37 61.51 18.79 12.89 13.85 29.46 24.27 12.58 68.80 51.75 10.82 65.61 37.65 29.19 26.75 49.38 30.82 51.41 44.72 28 I1_SR8 SilentIntronRegion 1 10.44 26.65 17.84 37.41 29.82 66.18 22.57 16.22 25.18 39.17 25.77 24.81 67.35 53.81 16.05 48.71 54.17 52.81 21.29 48.52 25.33 37.59 48.84 29 I1_AR13 ActiveIntronRegion 0 18.30 45.42 17.07 26.51 30.98 53.76 25.74 13.88 19.50 30.73 21.92 29.03 52.31 38.84 14.51 34.92 39.78 22.81 22.90 49.95 16.74 28.45 29.94 30 I1_SR9 SilentIntronRegion 1 16.96 51.64 19.01 32.59 35.14 60.47 28.85 15.61 16.73 27.78 16.71 22.48 61.02 34.52 9.57 23.87 31.32 13.60 13.89 37.33 10.88 28.86 17.63 31 I1_AR14 ActiveIntronRegion 1 17.50 47.50 24.65 43.40 44.29 75.37 27.83 11.90 20.16 29.30 22.09 16.00 47.14 52.59 12.49 43.62 45.45 52.49 23.50 52.71 35.24 28.47 40.88 32 I1_AR15 ActiveIntronRegion 0 71.50 69.64 34.97 62.21 60.37 106.08 40.71 23.86 29.22 37.51 24.00 21.88 50.73 36.85 21.35 35.98 36.29 25.56 21.44 51.43 12.62 43.50 31.61 33 E2_Aa NovelBoundary 0 129.95 118.47 59.37 101.52 90.15 148.21 40.94 47.93 36.81 50.34 36.75 47.72 74.67 58.16 31.52 75.45 58.53 77.97 24.38 50.11 25.51 54.25 31.58 34 ER2a ExonRegion 0 83.39 112.24 51.97 72.81 43.72 134.95 40.75 33.10 41.84 57.21 42.73 17.87 44.69 67.13 42.39 75.16 66.84 107.79 50.01 74.89 52.71 38.02 53.48 35 E2_Ab KnownBoundary 0 129.50 170.23 70.37 105.81 56.96 212.38 53.53 42.63 48.67 84.13 52.86 47.57 54.22 52.50 56.62 58.96 79.94 114.00 17.88 84.50 74.63 42.74 32.44 36 ER2b ExonRegion 0 160.45 170.92 67.32 115.91 71.81 208.40 43.73 36.00 51.43 83.86 67.94 30.13 36.67 100.89 53.42 100.39 94.13 127.40 67.66 94.48 60.72 78.21 61.91 37 E2a_E3a KnownJunction 0 177.07 238.18 97.04 148.60 98.98 195.51 43.15 46.95 56.22 108.74 61.96 67.37 26.13 105.54 54.27 111.34 105.19 154.50 111.44 117.48 42.81 115.61 105.00 38 I2_AR2 ActiveIntronRegion 0 5.29 3.72 1.05 2.62 7.01 5.54 3.38 2.41 4.93 5.35 2.83 5.16 17.03 2.44 3.16 0.93 4.64 1.23 1.00 3.66 0.00 11.38 2.30 39 E3_Aa NovelBoundary 1 30.67 3.35 7.24 5.93 8.66 2.56 2.25 7.11 5.18 7.52 2.26 0.00 29.22 0.00 4.82 0.00 16.46 0.00 4.80 0.00 0.00 11.63 7.34 40 ER3a ExonRegion 0 212.00 262.13 102.17 131.82 104.35 287.70 77.27 68.00 60.95 109.80 114.86 49.11 48.82 114.27 78.00 137.40 110.34 145.06 112.85 97.70 42.63 182.09 98.59 41 E3a_E4a KnownJunction 0 356.36 367.30 130.24 147.47 153.99 365.41 151.83 83.17 85.50 120.48 126.03 31.06 53.24 122.14 59.46 130.73 129.87 113.42 73.13 144.52 43.24 140.29 74.44 42 E4_Aa NovelBoundary 0 18.52 8.75 15.14 34.09 12.99 0.00 15.15 0.00 3.07 7.04 4.47 14.40 14.12 2.30 0.00 4.36 4.77 1.74 0.00 2.88 3.09 2.33 0.00 43 ER4a ExonRegion 0 212.56 238.84 138.24 165.78 108.19 185.91 64.12 68.47 58.50 102.82 73.38 34.08 71.22 110.79 84.49 114.97 83.25 102.91 87.70 76.60 64.02 107.51 74.33