Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC35F2 Gene 0 13.54 42.91 28.11 19.72 7.78 42.93 2.80 3.44 2.46 7.38 108.72 31.73 47.60 92.42 74.66 95.63 112.46 5.62 15.80 23.56 30.91 42.93 47.04 2 429869 Transcript 0 0.00 0.01 0.73 0.00 0.00 0.44 0.00 0.00 0.00 0.10 0.09 0.00 0.17 0.06 0.26 1.29 0.59 0.00 0.00 0.00 1.17 0.00 0.52 3 265836 Transcript 0 17.67 35.97 23.63 17.01 8.52 37.54 3.20 3.42 1.52 6.54 81.70 14.19 30.30 67.76 67.15 56.59 83.29 2.48 9.82 16.38 23.12 30.93 23.86 4 375682 Transcript 0 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 2.30 1.11 3.71 0.00 0.00 0.00 8.06 2.34 1.10 5 ER1a ExonRegion 0 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 I1_AR1 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.23 48.88 292.38 358.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E2_Aa NovelBoundary 1 58.01 549.84 18119.67 12560.97 312.73 164.39 71.46 7455.27 1273.11 11542.61 13378.39 611.75 344.46 4986.02 9014.92 14574.55 12646.83 4383.45 25509.82 7640.15 7959.83 6995.87 7814.14 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E2_Da NovelBoundary 1 294.72 555.43 3377.59 1300.10 102.89 503.74 440.96 1188.56 213.83 1460.32 542.77 45.31 72.24 250.40 587.31 727.84 334.08 1248.70 428.25 310.83 357.57 166.80 456.35 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER3a ExonRegion 0 0.00 0.00 1.19 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.61 0.00 1.22 0.42 0.65 1.55 1.05 0.00 0.00 0.00 0.81 0.00 0.93 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 0.00 0.00 2.41 0.00 0.00 14 E4_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 2.68 0.00 0.00 0.00 6.18 4.36 0.00 2.24 0.00 2.94 6.05 2.63 20.57 15 ER4a ExonRegion 0 0.00 0.08 2.45 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 3.30 3.06 0.00 0.00 0.00 4.98 0.00 2.72 16 ER4b ExonRegion 1 3.43 19.68 6.98 3.40 2.02 36.11 1.41 1.56 0.00 2.37 37.06 3.00 3.53 65.37 62.91 212.65 47.55 5.86 34.90 12.05 17.49 42.38 141.91 17 E4a_E6a KnownJunction 1 7.11 15.13 3.93 3.56 0.00 15.73 2.16 4.85 0.00 6.80 111.55 57.17 18.18 38.67 11.25 20.08 76.95 0.00 0.00 12.46 37.00 18.74 8.11 18 ER5a ExonRegion 0 0.00 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 4.61 2.23 7.43 0.00 0.00 0.00 11.25 4.69 2.20 19 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 20 E6_Aa NovelBoundary 0 0.00 9.80 2.66 1.37 0.00 4.66 0.00 0.00 0.00 0.00 2.68 0.00 20.78 0.00 4.45 0.00 3.93 0.00 0.00 3.26 0.00 0.00 0.00 21 ER6a ExonRegion 0 20.13 21.62 38.44 20.30 11.28 60.37 1.38 5.00 3.69 12.04 159.04 58.30 78.05 152.71 131.56 285.24 162.85 5.26 60.36 47.16 52.55 106.91 183.52 22 E6_Da NovelBoundary 0 13.71 24.01 4.70 1.50 6.28 0.00 0.00 0.00 1.36 1.67 0.00 0.00 13.64 2.47 6.30 0.00 9.54 0.00 0.00 2.68 0.00 0.00 0.00 23 E6a_E7a KnownJunction 0 6.15 32.23 41.07 22.24 14.52 143.38 6.40 4.35 7.47 11.01 149.83 83.13 124.83 117.61 85.05 111.59 182.51 4.64 22.97 55.35 46.46 72.01 43.19 24 ER7a ExonRegion 0 9.86 69.97 62.02 40.08 11.25 63.91 3.10 5.41 7.93 10.70 232.20 106.58 139.68 172.26 95.13 113.71 234.05 13.53 15.48 46.54 60.00 80.61 46.64 25 E7_Da NovelBoundary 1 3.19 6.71 0.00 2.90 7.98 0.00 0.00 0.00 1.19 0.00 0.00 18.01 26.62 0.00 0.00 34.86 21.51 0.00 3.86 2.81 0.00 0.00 12.04 26 E7a_E8a KnownJunction 0 5.78 81.83 69.28 56.77 0.00 49.18 0.00 4.85 6.19 15.69 211.42 98.88 126.62 200.37 103.47 123.04 280.13 15.21 35.01 58.61 103.85 76.60 64.11 27 I7 Intron 0 1.98 46.14 2.86 1.80 1.12 0.83 0.98 0.46 0.39 0.63 1.90 1.94 9.04 0.85 3.30 5.08 7.66 0.55 0.46 1.96 0.43 0.71 1.42 28 I7_AR1 ActiveIntronRegion 0 3.02 22.68 2.06 2.00 2.05 0.40 0.32 0.00 1.01 1.44 2.01 3.85 11.89 0.66 3.51 3.94 12.19 0.00 1.40 2.60 0.66 1.35 1.61 29 I7_SR2 SilentIntronRegion 0 1.82 50.61 3.02 1.78 0.97 0.91 1.11 0.54 0.28 0.50 1.89 1.62 8.63 0.89 3.29 5.30 6.93 0.65 0.30 1.84 0.38 0.60 1.40 30 E8_Aa NovelBoundary 0 0.00 45.78 3.31 0.00 0.00 0.00 12.45 0.00 0.00 1.29 0.00 0.00 8.28 2.18 4.45 14.87 22.53 0.00 8.85 0.00 0.00 0.00 0.00 31 ER8a ExonRegion 0 16.99 125.42 59.61 46.97 14.13 52.64 5.26 6.62 5.64 13.16 250.29 101.15 135.54 198.95 104.93 137.54 291.30 12.70 21.90 47.25 77.18 73.51 66.97 32 E8_Da NovelBoundary 0 2.74 84.13 10.17 6.56 0.00 0.00 0.00 1.60 0.00 0.00 15.00 0.00 33.44 14.01 4.82 12.73 30.57 0.00 8.66 2.43 0.00 2.76 3.59 33 E8a_E9a KnownJunction 0 22.15 61.24 51.92 46.28 11.12 77.29 5.43 4.52 7.06 12.06 219.63 143.90 129.54 179.71 145.62 156.03 283.68 17.62 44.61 47.55 95.45 78.50 67.01 34 E8a_E10a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.74 0.00 0.00 4.53 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 I8 Intron 0 1.97 47.81 3.60 2.31 1.65 3.24 1.51 0.53 0.19 0.00 8.21 8.34 13.62 8.09 7.72 4.62 12.30 0.29 0.33 1.54 0.91 3.89 3.65 36 I8_SR1 SilentIntronRegion 0 1.98 48.01 3.61 2.32 1.65 3.25 1.51 0.54 0.19 0.00 8.24 8.38 13.68 8.13 7.75 4.64 12.35 0.29 0.33 1.55 0.92 3.90 3.67 37 E9_Aa NovelBoundary 0 0.00 61.70 3.99 0.00 7.30 9.37 0.00 0.00 0.00 1.26 11.74 0.00 13.64 5.47 0.00 10.51 9.26 0.00 0.00 2.94 3.09 0.00 0.00 38 ER9a ExonRegion 0 11.61 109.67 49.43 49.64 15.97 78.61 4.48 7.19 4.44 16.87 262.90 102.20 97.18 208.49 140.29 184.84 266.30 20.03 32.69 50.24 54.11 99.92 72.35 39 E9_Da NovelBoundary 0 0.00 46.18 7.10 1.83 0.00 2.78 1.77 0.00 4.89 0.00 7.90 11.55 6.82 20.43 0.00 16.75 14.31 0.00 0.00 9.27 2.35 5.51 0.00 40 E9a_E10a KnownJunction 0 14.60 80.51 61.20 42.25 7.22 98.35 9.01 6.45 4.60 19.15 275.44 60.62 111.36 183.35 158.85 150.73 253.30 8.00 32.85 52.80 51.77 74.95 78.62 41 I9 Intron 0 3.35 22.14 5.61 6.05 5.23 5.29 1.97 1.20 0.34 1.43 9.35 17.11 27.73 12.61 9.67 9.40 10.44 0.17 0.59 2.97 0.41 5.62 2.46 42 I9_SR1 SilentIntronRegion 0 3.36 22.22 5.63 6.07 5.25 5.31 1.98 1.20 0.34 1.44 9.39 17.18 27.83 12.66 9.71 9.44 10.48 0.17 0.60 2.98 0.41 5.64 2.47 43 E10_Aa NovelBoundary 0 12.89 49.93 6.50 0.00 17.15 11.87 3.97 2.22 0.00 1.40 12.48 6.30 19.97 7.18 16.44 0.00 13.74 0.00 0.00 3.07 0.00 10.96 4.10 44 ER10a ExonRegion 0 14.86 79.39 52.55 38.03 16.21 104.98 7.04 4.89 5.55 17.40 278.01 97.05 119.64 183.71 163.24 146.64 273.29 10.88 27.23 60.18 55.92 94.70 65.49 45 E10_Da NovelBoundary 0 12.97 45.45 1.83 3.83 0.00 16.98 0.00 0.00 0.00 1.29 10.11 0.00 12.50 11.65 4.45 0.00 0.00 0.00 0.00 5.82 0.00 5.57 0.00 46 E10a_E11a KnownJunction 0 17.11 109.78 45.30 40.89 12.14 53.78 3.71 6.98 6.25 13.97 234.43 113.59 114.28 208.78 100.50 187.22 293.50 18.07 13.37 54.14 47.63 122.53 50.53 47 I10 Intron 0 5.40 20.66 4.66 4.75 4.36 4.68 0.83 1.72 0.69 1.07 11.47 7.20 23.64 8.96 8.65 6.46 13.52 0.12 0.13 2.05 1.84 6.18 4.91 48 I10_SR1 SilentIntronRegion 0 4.96 22.38 5.72 1.71 3.64 3.22 0.90 2.16 0.15 0.43 8.28 7.41 18.33 6.89 8.23 5.48 13.82 0.00 0.27 2.67 1.11 7.36 3.69 49 I10_AR1 ActiveIntronRegion 0 5.94 19.74 3.58 8.09 5.31 6.46 0.80 1.41 1.34 1.87 15.11 7.43 31.33 11.57 9.40 7.88 14.46 0.15 0.00 1.26 2.81 5.11 6.45 50 E11_Aa NovelBoundary 0 7.26 38.09 4.58 4.10 4.33 7.72 8.39 0.00 0.00 0.00 0.00 0.00 6.82 10.18 5.19 3.25 7.95 0.00 0.00 3.26 6.12 2.88 0.00 51 ER11a ExonRegion 0 22.65 113.72 62.68 41.19 11.83 92.15 3.90 5.37 9.49 12.58 246.65 91.78 117.83 181.06 125.47 165.29 250.80 16.33 22.93 50.87 62.10 87.84 61.12 52 E11_Da NovelBoundary 0 0.00 23.94 0.00 0.00 7.81 0.00 0.00 0.00 0.00 0.00 12.27 13.50 0.00 9.83 10.26 0.00 26.83 0.00 0.00 0.00 3.15 0.00 0.00 53 E11a_E12a KnownJunction 0 17.04 70.18 46.78 29.13 11.21 90.12 8.13 5.05 8.28 14.00 218.95 37.81 108.60 190.42 94.81 179.87 209.07 10.94 33.70 53.37 60.97 69.32 67.86 54 E12_Aa NovelBoundary 0 13.41 9.87 0.00 2.00 3.74 0.00 0.00 0.00 0.00 0.00 6.58 0.00 0.00 6.65 4.45 12.56 9.07 2.57 0.00 0.00 3.03 0.00 3.84 55 ER12a ExonRegion 0 16.03 53.87 54.51 32.68 6.73 83.22 4.54 4.56 4.58 13.92 181.79 45.27 98.47 180.14 128.01 135.14 173.33 12.92 11.42 49.13 60.26 47.26 47.65 56 E12_Da KnownBoundary 0 16.89 43.74 25.55 26.90 3.57 49.63 0.00 2.51 0.00 4.57 114.71 37.66 60.55 163.52 90.98 109.71 130.81 8.66 12.71 28.95 33.79 37.84 68.21 57 E12_Db KnownBoundary 1 6.82 48.28 42.37 8.76 8.49 48.72 0.00 3.86 3.59 11.04 128.35 6.30 27.11 165.23 151.55 123.56 137.26 7.25 12.89 39.82 25.58 30.86 29.88 58 ER12b ExonRegion 0 11.45 53.23 46.64 25.81 7.08 54.26 0.00 4.98 2.47 11.13 170.32 27.25 44.42 193.37 168.78 144.24 168.54 12.50 14.05 43.43 45.11 42.16 57.70 59 ER12c ExonRegion 0 17.67 35.97 23.63 17.01 8.52 37.54 3.20 3.42 1.52 6.54 81.70 14.19 30.30 67.76 67.15 56.59 83.29 2.48 9.82 16.38 23.12 30.93 23.86