Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GRAMD1B Gene 0 9.51 15.78 21.81 20.95 8.46 26.85 7.92 18.61 32.32 18.90 63.20 1.50 75.57 1.85 7.95 0.31 2.91 42.57 28.40 60.71 16.83 32.41 67.04 2 322282 Transcript 0 2.61 3.41 4.22 2.95 3.75 14.83 1.43 3.40 8.70 5.77 19.77 3.18 26.80 0.50 5.44 0.00 0.00 11.96 9.91 14.29 2.38 9.33 17.93 3 456860 Transcript 0 0.00 0.00 0.61 2.97 1.63 6.93 0.00 0.92 6.26 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.72 2.66 6.78 0.03 0.00 0.00 4 450171 Transcript 0 14.22 13.22 16.89 11.28 3.85 7.17 10.58 8.45 15.19 10.34 38.61 0.01 32.16 0.01 4.81 0.00 0.57 26.80 12.41 29.95 8.05 19.93 38.16 5 IG1 Intergenic 0 2.64 0.55 1.43 0.87 1.41 0.32 0.99 3.58 1.26 0.72 0.89 0.15 9.01 0.02 0.51 0.02 0.35 1.63 0.66 1.84 1.31 0.99 11.26 6 IG1_SR1 SilentIntergenicRegion 0 2.51 0.51 0.74 0.29 2.10 0.26 0.71 3.23 0.07 0.19 1.38 0.00 11.35 0.05 0.48 0.05 0.71 2.24 0.00 1.06 2.60 1.34 13.05 7 IG1_AR1 ActiveIntergenicRegion 0 0.63 0.32 0.10 0.22 0.00 0.08 0.40 2.70 0.00 0.93 1.06 0.00 2.19 0.00 1.01 0.12 0.26 1.27 0.00 0.67 2.89 0.82 14.16 8 IG1_SR2 SilentIntergenicRegion 0 2.95 0.39 0.84 0.61 1.19 0.08 0.74 3.44 0.64 0.58 1.47 0.17 10.20 0.05 0.66 0.00 0.51 1.68 0.08 0.63 1.98 1.70 12.57 9 IG1_AR2 ActiveIntergenicRegion 0 1.78 0.00 1.55 1.60 4.11 0.00 0.22 5.48 1.40 1.35 0.68 0.00 7.10 0.00 1.37 0.00 0.39 0.22 0.00 0.25 1.30 2.41 18.71 10 IG1_SR3 SilentIntergenicRegion 0 8.02 0.65 1.74 1.30 3.05 0.25 0.97 4.58 1.14 0.47 1.68 0.20 18.87 0.06 0.56 0.00 0.45 0.80 0.00 0.10 1.21 2.93 12.92 11 IG1_SR5 SilentIntergenicRegion 0 2.51 0.20 0.93 0.85 2.73 0.12 0.76 5.07 0.75 0.33 1.35 0.00 6.07 0.04 0.55 0.00 0.11 2.51 0.00 0.34 1.55 2.27 14.25 12 IG1_AR5 ActiveIntergenicRegion 0 5.72 0.00 0.24 0.54 2.09 0.24 0.17 11.49 0.24 0.22 0.55 0.00 5.34 0.00 1.02 0.00 1.28 0.36 0.00 0.55 1.72 2.38 17.28 13 IG1_SR7 SilentIntergenicRegion 0 2.65 0.25 0.58 0.24 1.44 0.20 0.74 3.10 0.60 0.43 0.67 0.32 10.80 0.00 0.45 0.02 0.48 0.57 0.00 0.75 1.36 0.57 13.41 14 IG1_AR8 ActiveIntergenicRegion 0 4.77 0.00 0.00 1.26 0.93 0.64 0.83 0.02 0.64 0.00 0.32 0.00 9.27 0.00 0.51 0.00 0.58 0.80 0.00 0.00 2.56 0.36 10.53 15 IG1_AR9 ActiveIntergenicRegion 0 3.83 1.51 0.53 1.74 0.00 3.13 1.28 3.10 0.00 0.28 0.07 0.00 31.29 0.00 0.00 0.00 3.53 0.00 0.00 0.00 2.51 4.49 13.72 16 IG1_AR10 ActiveIntergenicRegion 0 1.13 0.95 1.23 1.36 0.00 5.50 1.24 5.99 1.24 1.15 0.00 0.00 25.95 0.00 0.00 0.00 9.90 0.00 0.00 1.84 0.88 2.64 0.78 17 IG1_AR11 ActiveIntergenicRegion 0 3.46 0.00 1.23 1.36 0.00 0.50 0.00 5.50 1.24 1.15 0.00 0.00 28.57 0.00 0.00 0.00 6.90 0.00 0.00 2.13 2.20 1.14 5.07 18 IG1_AR12 ActiveIntergenicRegion 0 6.35 0.00 1.23 0.68 0.00 0.00 0.00 8.64 1.24 1.15 0.69 0.00 19.77 0.00 0.00 0.00 3.54 0.00 0.00 3.50 4.41 0.00 5.87 19 IG1_SR8 SilentIntergenicRegion 0 3.17 0.12 0.90 0.43 1.24 0.15 1.07 3.42 1.11 0.74 0.87 0.22 12.90 0.01 0.51 0.00 0.36 0.84 0.09 0.71 1.14 0.82 12.93 20 ER1a ExonRegion 0 0.31 0.02 1.87 0.59 0.39 0.53 0.78 0.75 2.99 0.74 0.29 0.00 1.16 0.00 0.30 0.00 0.48 2.66 2.78 3.01 1.60 0.32 7.66 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 22 ER2a ExonRegion 0 1.81 7.75 9.32 4.37 5.17 20.16 5.30 6.72 19.15 13.86 51.19 1.56 56.35 1.44 7.71 0.00 0.80 28.50 15.88 35.81 9.84 22.99 54.89 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2a_E4a KnownJunction 0 10.00 15.06 16.35 9.09 18.93 76.15 4.15 12.94 36.54 26.62 96.08 19.06 142.04 3.00 27.81 0.00 0.00 45.68 42.82 56.18 5.44 45.56 84.08 25 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 8.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 4.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 5.24 6.97 14.70 4.87 11.21 55.28 4.54 17.61 26.47 22.01 94.07 12.99 135.34 3.79 16.99 0.00 0.00 35.37 39.74 53.70 5.56 32.24 86.00 28 I4 Intron 0 1.87 1.56 5.00 4.73 1.17 1.75 1.72 3.16 3.95 1.85 4.33 0.04 3.26 0.07 0.68 0.00 0.48 7.42 4.18 11.55 2.93 4.45 14.29 29 I4_SR1 SilentIntronRegion 0 1.76 1.41 5.13 4.32 1.11 1.61 1.82 3.37 4.04 1.92 4.58 0.07 3.66 0.10 0.83 0.00 0.55 7.32 4.23 11.49 3.04 3.96 13.62 30 I4_AR1 ActiveIntronRegion 0 1.09 1.05 5.23 3.77 1.67 2.50 0.68 1.39 3.79 1.69 3.63 0.00 1.68 0.00 0.18 0.00 0.59 4.70 4.81 8.89 2.40 5.78 15.07 31 I4_SR2 SilentIntronRegion 0 2.32 2.06 4.65 5.94 1.17 1.92 1.75 3.11 3.80 1.73 3.90 0.00 2.70 0.04 0.43 0.00 0.29 8.33 3.92 12.34 2.80 5.29 15.71 32 E5_Aa NovelBoundary 0 9.33 11.58 15.37 11.95 0.00 0.00 4.02 2.09 4.28 3.57 4.74 0.00 0.00 0.00 0.00 0.00 0.00 8.46 13.08 15.79 8.83 11.45 22.28 33 ER5a ExonRegion 0 7.22 12.75 16.45 13.21 10.55 33.20 7.16 19.14 35.43 26.43 84.98 3.21 116.04 4.36 11.54 0.00 0.00 45.45 50.70 62.28 14.54 39.54 94.87 34 E5a_E6a KnownJunction 0 8.89 21.90 20.73 14.85 6.37 54.40 10.38 18.44 45.83 23.80 101.55 6.15 123.04 7.24 5.44 0.00 0.00 41.12 24.66 75.10 16.12 36.07 90.91 35 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.51 11.52 36 ER6a ExonRegion 0 9.65 10.44 19.01 17.47 9.34 26.94 4.20 19.94 37.49 17.74 72.13 0.71 118.15 5.15 6.64 0.00 0.03 51.12 30.35 71.13 23.58 40.63 65.17 37 E6a_E7a KnownJunction 0 6.67 21.58 20.16 24.87 7.81 10.79 2.25 19.80 44.24 25.63 78.97 0.00 155.18 9.77 4.70 0.00 0.00 40.75 34.07 52.60 5.56 51.99 75.20 38 ER7a ExonRegion 0 12.06 29.36 22.52 23.38 20.21 24.85 11.72 23.87 41.41 23.73 106.29 2.16 180.76 5.65 6.80 0.00 8.49 61.26 45.62 84.68 25.76 59.32 104.40 39 E7_Da NovelBoundary 0 11.04 0.00 3.25 7.86 8.32 0.00 1.68 2.14 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 3.76 6.20 0.00 0.00 8.19 40 E7a_E8a KnownJunction 0 10.08 25.26 13.57 28.73 24.62 45.77 4.02 26.04 46.59 21.06 103.29 0.00 167.36 4.94 0.00 0.00 0.00 49.25 34.82 98.69 40.28 60.87 82.46 41 ER8a ExonRegion 0 7.79 18.63 16.60 33.53 11.93 24.20 9.06 21.64 40.51 21.75 91.71 0.16 166.29 2.41 7.67 0.00 4.65 73.04 31.70 92.70 28.19 56.74 88.17 42 E8a_E9a KnownJunction 0 9.33 12.56 29.74 38.62 3.65 36.91 4.50 23.17 37.88 13.22 100.66 0.00 143.66 5.47 15.33 0.00 17.11 70.06 22.12 83.28 19.40 54.07 69.66 43 ER9a ExonRegion 0 7.50 10.26 29.03 28.93 5.05 37.01 8.83 21.92 39.00 21.44 104.36 1.98 156.59 2.49 13.78 0.51 6.69 63.99 38.28 88.22 30.34 47.11 90.71 44 E9a_E10a KnownJunction 1 24.89 6.18 19.63 19.11 0.00 34.13 4.33 17.83 40.54 19.37 75.49 0.00 182.62 2.30 8.90 4.36 4.39 43.82 16.94 84.12 29.28 48.07 102.78 45 ER10a ExonRegion 0 13.47 13.37 25.39 27.81 7.04 29.47 8.41 25.88 45.40 22.76 92.77 1.10 154.05 1.07 8.85 1.55 5.66 69.93 39.48 83.41 26.71 43.17 94.37 46 E10a_E11a KnownJunction 0 10.59 22.96 15.64 22.01 8.66 32.77 8.17 16.80 45.86 20.39 67.75 0.00 115.58 2.47 13.35 0.00 7.39 53.43 17.04 95.94 39.29 18.74 61.89 47 ER11a ExonRegion 0 12.14 16.05 22.24 23.32 4.32 38.69 10.66 26.63 52.65 23.29 108.73 2.14 92.64 2.24 10.78 1.60 6.93 59.78 31.95 86.88 18.86 36.17 83.01 48 E11a_E12b KnownJunction 0 24.23 8.88 23.89 23.11 8.23 67.80 5.83 29.90 60.04 22.38 91.34 6.15 75.32 2.18 8.90 0.00 12.72 51.32 21.37 101.95 0.00 30.07 76.66 49 ER12a ExonRegion 0 4.21 4.00 1.97 2.51 0.07 1.57 1.02 2.72 1.71 0.73 3.99 0.03 9.29 0.02 0.09 0.00 1.15 2.15 0.16 7.86 2.32 5.63 5.72 50 E12_Ab KnownBoundary 0 0.00 0.00 0.00 3.36 0.00 5.79 2.03 0.00 6.19 2.23 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.11 6.18 8.57 7.51 51 ER12b ExonRegion 0 9.06 21.52 36.72 34.41 11.66 39.82 10.15 27.90 60.32 25.44 98.36 3.48 89.37 2.82 11.65 0.00 9.03 61.61 43.93 94.99 15.69 47.25 110.44 52 E12a_E13a KnownJunction 0 3.26 41.05 49.53 36.36 7.81 18.46 8.13 41.94 74.85 30.09 75.49 0.00 89.44 4.59 13.97 0.00 7.76 49.33 53.37 144.13 10.69 35.27 124.37 53 ER13a ExonRegion 0 8.41 28.40 38.84 43.04 13.42 41.99 8.82 23.25 55.74 26.74 96.86 1.53 83.75 1.95 12.04 0.00 2.05 64.64 37.64 98.94 21.17 46.45 95.65 54 E13a_E14a KnownJunction 0 3.78 30.26 52.90 25.90 43.72 55.20 14.84 38.77 51.97 35.22 57.86 0.00 94.47 2.94 14.83 0.00 0.00 69.19 17.69 57.27 21.44 27.74 78.88 55 ER14a ExonRegion 0 20.35 32.42 43.94 41.29 18.43 44.23 14.36 24.56 40.82 28.82 87.43 2.33 98.00 2.62 12.74 0.00 2.35 57.82 39.52 92.77 20.39 49.79 100.38 56 E14a_E15a KnownJunction 0 14.00 33.68 37.08 27.54 35.06 31.91 8.26 22.84 29.72 26.73 45.96 6.30 72.07 0.00 19.66 0.00 0.00 57.21 39.62 52.86 14.09 28.84 98.42 57 ER15a ExonRegion 0 12.07 25.95 34.98 35.05 18.19 31.95 11.42 30.71 35.13 27.64 70.87 4.75 89.11 2.08 15.48 0.00 4.35 47.12 37.21 81.16 24.77 39.83 105.13 58 E15a_E16a KnownJunction 0 16.67 27.17 29.83 26.84 15.53 38.44 22.35 21.15 38.54 31.13 57.70 6.75 65.42 0.00 4.45 0.00 13.74 58.66 18.92 102.14 33.30 20.15 71.96 59 ER16a ExonRegion 0 18.59 25.79 27.63 31.15 10.51 37.68 11.01 25.20 42.21 32.00 66.12 3.46 54.35 1.85 9.44 0.00 3.56 56.28 48.25 78.05 27.64 37.54 103.68 60 E16a_E17a KnownJunction 0 24.97 15.00 47.57 24.21 0.00 23.96 2.16 37.66 42.01 37.90 88.55 0.00 62.66 0.00 4.45 0.00 0.00 69.27 69.93 83.16 11.68 30.07 81.78 61 ER17a ExonRegion 0 15.49 16.58 33.07 23.69 6.15 20.96 11.60 23.82 38.57 25.80 70.46 0.00 53.45 1.39 7.43 0.00 0.00 52.41 47.54 84.24 23.10 45.43 104.69 62 E17a_E18a KnownJunction 0 0.00 0.00 1.24 5.06 3.74 8.69 0.00 0.00 7.20 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 8.18 0.00 0.00 0.00 63 E17a_E20b KnownJunction 0 24.23 22.43 31.81 20.04 7.64 12.78 20.14 14.17 28.67 19.96 73.23 0.00 55.03 0.00 9.52 0.00 0.00 51.44 24.66 52.03 13.78 34.23 70.60 64 E17b_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER17b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 5.50 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 66 E18a_E20b KnownJunction 0 0.00 0.00 1.27 4.79 3.57 8.69 0.00 2.22 13.40 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.69 4.80 15.28 0.00 0.00 0.00 67 ER18a ExonRegion 0 0.00 0.00 1.12 7.95 2.45 11.16 0.00 3.31 16.98 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.62 6.37 17.20 0.18 0.00 0.00 68 E19a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER19a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.71 1.18 0.73 0.00 0.00 70 ER20a ExonRegion 0 5.64 5.42 8.99 8.63 3.57 7.34 4.41 7.49 13.17 8.03 22.55 0.00 18.76 0.00 4.84 0.00 0.00 24.64 15.93 26.24 8.08 10.42 23.49 71 ER20b ExonRegion 0 16.10 31.51 33.57 28.68 12.00 38.13 13.73 40.24 50.51 27.90 91.23 0.00 78.06 1.62 9.95 0.00 2.99 74.12 50.46 84.63 22.61 44.47 96.99 72 E20a_E21a KnownJunction 0 16.82 16.18 48.85 41.19 23.85 36.00 25.61 52.90 72.97 40.53 66.33 0.00 64.12 7.00 0.00 0.00 3.93 104.63 33.51 101.24 17.61 37.90 86.13 73 ER21a ExonRegion 0 15.84 21.20 51.86 40.74 11.75 32.45 9.85 38.77 54.82 28.96 80.44 0.00 57.43 2.85 12.10 1.28 2.99 58.02 35.52 86.55 26.89 44.18 70.26 74 E21_Da NovelBoundary 0 20.67 2.70 25.10 18.11 8.66 17.66 4.33 7.93 7.70 8.70 14.16 0.00 20.45 0.00 0.00 0.00 0.00 8.08 25.22 2.81 0.00 6.00 17.76 75 E21a_E22a KnownJunction 0 9.48 13.55 23.30 27.24 0.00 32.88 5.34 24.07 42.68 37.20 83.76 0.00 58.92 2.30 0.00 0.00 0.00 29.22 11.58 83.54 27.80 46.90 27.15 76 I21 Intron 0 5.59 8.97 9.69 9.97 3.39 6.49 3.43 8.16 8.36 4.15 5.51 0.38 15.89 0.09 1.19 0.00 0.35 6.94 6.64 11.63 1.74 5.78 11.16 77 I21_AR1 ActiveIntronRegion 0 8.81 9.35 10.78 10.95 6.07 3.90 4.48 8.24 10.25 4.79 10.81 0.00 16.61 0.00 0.41 0.00 1.32 9.01 10.12 13.48 1.32 6.25 9.21 78 I21_SR1 SilentIntronRegion 0 5.10 8.92 9.53 9.84 2.99 6.89 3.27 8.16 8.08 4.06 4.71 0.43 15.79 0.10 1.31 0.00 0.20 6.63 6.12 11.36 1.81 5.71 11.47 79 E22_Aa NovelBoundary 0 3.48 6.18 3.28 6.19 0.00 8.57 2.25 4.27 2.66 3.33 5.37 0.00 6.33 0.00 0.00 0.00 0.00 0.00 18.54 17.45 5.31 3.06 12.46 80 ER22a ExonRegion 0 9.28 15.94 14.60 13.30 9.86 29.59 9.01 10.84 15.15 13.94 28.29 0.72 53.48 1.03 5.74 0.50 0.55 19.53 10.95 32.07 10.43 22.21 19.22 81 IG2 Intergenic 0 16.28 55.61 48.74 56.32 20.27 55.09 15.20 37.16 45.28 27.16 34.42 1.04 46.28 1.39 4.28 0.06 2.40 37.35 26.78 60.48 12.74 40.65 61.12 82 IG2_AR1 ActiveIntergenicRegion 0 1.75 14.62 27.11 30.67 5.90 38.14 7.63 17.97 30.45 22.98 34.30 1.47 36.93 1.72 5.13 0.00 1.68 28.65 22.08 55.92 13.28 28.41 46.36 83 IG2_SR1 SilentIntergenicRegion 0 3.44 29.17 19.62 31.54 10.03 32.20 7.08 23.72 38.59 17.41 32.85 2.12 29.70 1.22 6.18 0.00 1.88 44.86 23.76 68.58 17.50 34.71 69.84 84 IG2_AR2 ActiveIntergenicRegion 0 9.91 48.17 24.43 42.05 17.38 51.58 14.11 27.07 49.08 26.29 38.57 0.56 37.85 1.77 3.90 0.00 2.10 49.68 39.72 75.06 19.42 40.20 82.21 85 IG2_SR2 SilentIntergenicRegion 0 5.18 23.85 15.20 24.73 7.58 27.51 5.36 22.33 32.83 21.77 36.94 0.10 54.07 0.66 1.27 0.00 3.15 16.03 10.02 39.30 6.78 27.27 26.73 86 IG2_AR3 ActiveIntergenicRegion 0 13.18 61.32 31.37 40.90 22.45 62.69 18.89 34.80 40.30 27.42 34.62 0.96 59.07 1.68 4.45 0.00 2.39 36.53 26.76 76.06 14.75 45.76 67.10 87 IG2_SR3 SilentIntergenicRegion 0 14.31 93.02 44.59 67.63 23.94 72.60 22.73 51.47 58.13 28.47 50.19 0.00 82.49 2.11 4.37 0.00 6.08 29.85 26.20 65.56 13.92 55.98 76.76 88 IG2_AR4 ActiveIntergenicRegion 0 26.74 75.53 79.43 84.31 28.54 72.90 20.16 53.62 59.25 35.89 41.35 1.43 57.89 1.56 5.32 0.12 2.94 44.63 31.26 68.15 13.10 52.06 70.48