Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NEU3 Gene 0 9.30 29.86 11.04 20.87 14.42 27.57 31.33 10.64 16.43 15.73 60.53 74.98 44.15 75.49 64.05 70.32 54.75 43.64 31.96 44.29 20.51 11.11 13.03 2 294064 Transcript 0 4.49 15.84 6.49 10.25 6.11 19.08 15.83 6.43 9.31 11.44 40.44 34.46 21.17 63.02 45.64 48.71 37.31 32.96 23.77 35.60 16.21 8.56 12.45 3 IG41 Intergenic 0 5.29 4.22 2.94 5.29 4.67 7.76 19.83 5.62 6.90 1.93 3.14 12.26 17.76 6.33 8.68 11.32 13.27 12.20 4.12 16.69 3.81 3.76 5.57 4 IG41_SR1 SilentIntergenicRegion 0 8.47 3.64 3.19 7.93 5.01 6.69 25.98 5.80 6.35 2.60 4.10 14.27 26.46 6.14 11.26 15.07 14.59 15.71 5.37 20.63 3.71 4.80 6.27 5 IG41_AR1 ActiveIntergenicRegion 0 8.28 6.04 3.58 6.37 12.08 11.30 29.47 7.58 13.73 2.08 3.39 25.05 36.17 10.87 15.80 15.27 15.57 14.68 5.10 31.02 5.97 5.65 11.94 6 IG41_AR2 ActiveIntergenicRegion 0 5.68 6.68 4.52 5.97 4.83 10.90 22.38 8.50 8.83 2.03 3.49 11.15 11.65 7.14 7.85 12.72 18.53 13.10 3.29 17.01 5.44 4.51 6.16 7 ER1a ExonRegion 0 3.17 9.20 2.00 1.78 4.55 8.03 9.78 0.95 2.87 0.77 8.80 8.81 7.62 13.30 11.76 15.46 12.18 6.13 10.22 15.00 6.45 5.00 5.73 8 E1a_E2a KnownJunction 1 0.00 3.29 3.52 2.06 0.00 4.60 1.99 5.91 3.10 8.84 40.38 6.30 6.17 108.07 35.23 30.33 25.25 18.78 14.12 24.61 11.24 10.72 16.99 9 ER2a ExonRegion 0 2.86 8.01 6.34 10.03 6.44 21.28 14.02 5.89 9.63 13.67 43.63 41.93 24.05 67.12 51.85 66.66 52.94 48.25 24.99 41.45 19.01 7.16 10.80 10 E2_Da NovelBoundary 0 3.11 0.00 6.92 7.13 3.57 0.00 4.50 1.60 4.63 1.56 11.95 18.61 13.15 32.55 23.49 12.65 30.95 6.72 4.52 14.45 11.49 2.51 4.18 11 E2a_E3a KnownJunction 0 3.78 17.56 5.06 6.96 0.00 24.59 10.78 3.98 7.81 11.34 24.16 7.65 5.68 22.54 40.79 35.89 22.25 31.67 27.20 39.31 17.42 5.69 12.21 12 I2 Intron 0 8.40 7.33 2.32 4.11 6.52 2.42 11.64 2.34 2.77 2.08 6.32 28.77 29.16 10.92 11.46 10.71 10.36 3.00 1.90 6.23 3.14 2.76 3.12 13 I2_AR1 ActiveIntronRegion 0 4.53 4.35 1.95 1.45 2.86 3.27 10.86 2.76 1.31 1.83 11.72 18.71 9.64 20.30 12.74 16.94 17.66 7.53 1.14 3.79 2.36 0.74 2.09 14 I2_SR1 SilentIntronRegion 0 10.03 7.95 2.72 4.78 7.22 2.41 12.74 2.23 2.93 2.25 6.35 31.50 32.23 10.51 11.50 10.80 10.16 2.93 1.76 7.07 3.28 2.16 3.25 15 I2_SR2 SilentIntronRegion 0 3.10 5.97 0.80 2.39 5.09 2.15 7.35 2.64 2.70 1.50 3.97 21.46 24.38 8.87 10.82 7.84 8.23 1.49 2.80 3.75 2.91 6.11 3.01 16 E3_Aa NovelBoundary 0 11.11 6.64 1.48 4.13 0.00 13.86 15.15 2.38 9.29 5.26 9.27 26.26 6.66 2.24 8.90 7.60 4.30 8.71 0.00 3.20 0.00 0.00 12.21 17 ER3a ExonRegion 0 12.64 41.12 15.51 30.41 19.58 36.88 42.57 15.41 23.12 22.61 85.23 107.63 62.35 104.06 88.56 95.18 73.95 59.98 42.33 57.65 26.93 14.21 16.50 18 IG42_SR1 SilentIntergenicRegion 0 16.29 41.37 24.54 40.46 28.32 51.12 50.23 15.87 19.33 22.53 55.82 132.60 66.63 61.97 68.01 49.52 45.51 20.16 27.40 47.20 10.63 13.64 8.33 19 IG42_AR1 ActiveIntergenicRegion 0 17.99 45.33 25.80 26.97 31.76 52.43 46.66 18.15 19.79 22.74 50.35 65.50 42.19 88.64 92.65 81.77 60.98 48.58 40.71 49.71 19.42 9.73 12.16 20 IG42_SR2 SilentIntergenicRegion 0 0.00 8.54 0.25 4.09 0.00 4.40 6.88 2.07 7.66 9.63 7.73 6.93 3.75 6.82 8.12 10.11 19.15 5.91 0.00 5.96 1.76 0.00 0.59 21 IG42_SR3 SilentIntergenicRegion 0 12.56 22.98 13.32 10.22 7.94 18.15 33.19 12.27 10.87 9.94 32.02 28.86 18.13 39.14 46.03 24.77 21.35 7.88 8.92 13.83 6.83 0.63 2.74 22 IG42_AR3 ActiveIntergenicRegion 0 52.36 83.33 56.69 73.92 32.30 63.30 55.06 34.30 27.24 32.52 84.72 62.06 36.97 84.70 128.84 113.80 78.80 71.10 34.30 59.60 28.97 13.70 13.64 23 IG42_SR4 SilentIntergenicRegion 0 71.19 135.74 35.68 77.37 40.59 52.79 56.23 19.23 20.93 22.90 58.75 38.00 25.08 68.23 126.33 77.12 40.67 24.33 22.70 57.56 16.45 10.40 5.93 24 IG42_AR4 ActiveIntergenicRegion 0 42.72 68.41 55.56 62.58 25.82 38.63 31.37 25.87 26.92 21.17 71.62 50.17 22.14 59.42 107.73 60.00 47.00 41.03 27.33 41.29 14.82 12.80 9.16