Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C11orf30 Gene 0 47.07 74.95 35.12 66.05 41.01 79.19 93.26 30.87 32.99 32.12 75.99 69.20 75.88 70.17 27.57 50.48 60.17 89.31 37.17 77.08 43.96 62.06 57.77 2 343878 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 19.32 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 3.84 3 334736 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 393457 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 427574 Transcript 0 3.38 6.17 1.86 8.28 6.72 3.11 13.25 4.04 4.05 3.95 25.94 35.20 31.30 20.34 3.09 19.96 21.17 11.69 1.94 14.31 9.44 17.88 9.63 6 IG11_SR5 SilentIntergenicRegion 0 17.15 23.59 18.39 21.78 15.23 10.03 24.92 3.95 2.42 1.87 4.23 9.37 9.66 14.03 15.61 3.90 2.89 5.43 2.09 9.78 0.00 2.28 0.00 7 IG11_AR5 ActiveIntergenicRegion 0 18.48 26.45 36.86 32.61 23.24 13.95 45.17 8.68 8.35 10.57 16.12 35.63 17.24 32.40 32.14 15.16 20.69 15.26 20.65 32.41 6.57 5.04 4.70 8 IG11_AR6 ActiveIntergenicRegion 0 0.00 1.48 0.00 0.00 4.70 0.00 1.32 0.00 0.00 0.00 9.82 0.00 0.00 5.14 4.16 10.28 6.42 3.95 6.97 9.43 0.00 0.00 3.97 9 ER1a ExonRegion 0 5.44 5.23 0.70 0.19 3.06 8.91 8.51 1.23 0.00 0.49 4.97 0.00 0.00 3.02 0.00 0.00 3.30 3.96 3.19 0.91 1.89 2.38 0.42 10 ER1b ExonRegion 1 43.73 52.85 10.09 10.50 16.66 76.49 120.67 10.12 6.95 9.07 66.14 12.54 5.17 38.34 16.78 52.27 45.53 84.27 23.05 64.47 28.42 30.72 64.67 11 E1a_E2a KnownJunction 0 2.89 15.85 7.89 15.92 0.00 10.68 21.64 3.98 3.44 1.07 21.06 43.96 32.63 8.89 0.00 22.73 22.07 45.47 12.99 22.69 3.15 2.63 19.72 12 ER2a ExonRegion 1 4.04 10.35 18.22 12.05 3.51 10.92 21.49 14.24 14.08 16.39 82.23 18.31 17.99 34.40 8.70 19.66 55.39 47.80 12.27 61.23 37.40 28.56 37.69 13 E2a_E3a KnownJunction 0 21.19 12.56 42.52 35.59 8.57 12.49 25.04 17.46 27.14 33.77 128.09 35.41 54.38 79.29 23.36 70.07 83.59 111.76 27.01 127.51 52.20 102.81 135.04 14 ER3a ExonRegion 0 10.39 16.59 27.51 30.45 14.56 34.26 33.32 14.93 20.02 30.63 89.32 38.88 31.66 78.12 27.30 77.10 67.34 125.68 45.39 100.43 46.67 67.80 78.35 15 E3a_E4a KnownJunction 1 17.26 54.14 24.39 31.76 31.92 83.76 86.51 30.76 28.70 46.12 101.55 81.93 27.43 68.75 13.85 29.22 90.98 110.39 26.07 143.49 67.03 52.23 51.47 16 ER4a ExonRegion 0 15.92 57.94 33.72 31.58 30.50 102.30 152.18 25.00 29.53 37.48 115.87 74.24 77.23 67.63 20.39 44.07 86.92 122.54 17.03 115.04 61.62 53.09 49.45 17 E4_Da NovelBoundary 0 11.19 32.30 26.70 8.09 8.40 2.73 95.30 6.12 4.66 5.69 9.37 0.00 7.95 10.18 22.37 12.99 9.35 6.76 4.80 9.46 0.00 0.00 12.72 18 E4a_E5a KnownJunction 1 7.56 2.83 1.45 1.63 7.89 0.00 15.37 6.78 5.53 3.84 22.01 60.92 32.95 14.60 5.19 20.17 22.35 5.18 0.00 11.38 9.27 14.08 11.27 19 E4a_E6a KnownJunction 0 10.52 72.29 16.59 31.56 0.00 52.75 89.39 20.70 30.03 28.61 48.54 23.11 73.86 95.94 35.35 47.08 64.05 119.84 32.57 85.01 41.33 78.75 82.38 20 I4_AR1 ActiveIntronRegion 0 7.17 6.48 13.64 5.06 9.33 3.47 19.66 6.93 2.75 3.26 5.20 10.98 11.49 4.66 9.45 3.26 5.91 0.18 2.86 8.21 0.00 6.02 0.88 21 ER5a ExonRegion 0 2.97 5.96 0.61 3.83 4.65 3.49 7.66 4.20 3.47 3.17 34.47 31.65 36.63 22.89 5.25 26.47 25.07 16.15 0.61 14.89 12.70 20.74 12.73 22 E5a_E6a KnownJunction 1 0.00 2.57 0.00 7.16 8.23 4.77 3.97 2.55 0.00 3.79 44.96 38.56 39.77 41.85 0.00 29.99 32.73 21.47 3.67 18.34 14.39 34.54 11.44 23 ER6a ExonRegion 1 22.48 36.44 20.07 35.01 12.69 42.94 58.69 26.15 32.95 43.26 85.55 79.38 77.95 96.46 16.67 69.47 91.51 127.40 29.94 112.79 65.46 67.38 79.21 24 E6a_E7a KnownJunction 0 37.71 24.21 10.82 31.23 11.04 26.69 54.36 23.41 31.16 30.97 79.60 25.06 80.35 83.76 19.53 76.22 61.90 159.18 56.94 91.72 54.67 88.48 94.50 25 E6a_E7b KnownJunction 0 3.78 0.00 7.21 3.56 0.00 23.79 16.78 4.68 0.00 3.14 7.05 0.00 13.64 4.94 0.00 0.00 13.28 31.84 3.76 5.94 5.75 18.19 23.99 26 E6a_E8a NovelJunction 1 14.74 6.45 3.55 13.42 11.54 37.82 37.76 14.91 7.20 11.50 40.85 12.60 68.99 79.76 38.69 60.07 44.97 58.91 14.40 108.98 16.87 44.33 28.17 27 E7_Aa NovelBoundary 0 0.00 0.00 5.88 3.43 4.33 2.38 13.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 1.58 13.84 3.20 0.00 0.00 0.00 28 ER7a ExonRegion 0 30.16 25.42 9.80 27.26 8.03 27.51 56.93 19.88 27.79 27.53 78.28 45.46 94.97 93.39 19.58 67.62 75.92 149.67 44.60 79.26 52.34 93.24 94.71 29 ER7b ExonRegion 0 9.02 18.18 11.87 25.00 9.91 36.54 57.58 15.73 22.40 18.18 62.10 56.22 80.17 62.83 13.20 53.00 61.17 95.46 27.60 64.73 47.96 59.23 81.56 30 E7a_E8a KnownJunction 0 7.26 14.73 20.96 45.38 13.33 85.29 69.56 24.27 28.47 30.73 79.97 58.22 107.95 114.13 23.86 98.69 85.18 123.08 51.39 117.93 60.73 119.53 170.64 31 E8_Aa NovelBoundary 0 3.56 14.41 16.62 15.08 3.23 15.45 7.95 2.55 6.94 0.00 0.00 5.85 6.82 2.47 5.07 0.00 8.32 8.29 4.80 11.70 0.00 3.00 8.28 32 ER8a ExonRegion 0 35.59 45.83 22.53 62.65 27.44 61.22 89.26 35.30 42.78 41.54 124.55 133.71 149.76 124.58 24.92 100.87 124.58 148.47 56.41 167.96 76.72 106.69 133.78 33 E8a_E9a KnownJunction 0 57.49 57.03 27.59 63.13 29.97 86.83 150.24 56.27 58.56 43.46 168.15 165.20 154.21 134.50 24.35 181.15 185.79 167.10 68.14 244.16 79.45 115.85 156.64 34 ER9a ExonRegion 0 20.40 29.08 22.65 44.53 22.39 57.65 86.22 36.98 45.89 39.99 122.62 122.52 155.72 107.06 31.78 81.70 108.51 165.11 58.90 140.52 76.45 86.68 96.26 35 E9a_E10a KnownJunction 0 9.93 32.56 31.64 52.17 14.60 81.03 70.48 52.53 66.87 45.61 105.50 171.66 130.67 123.96 29.92 70.58 99.58 269.32 60.90 164.59 80.99 74.70 88.86 36 I9 Intron 0 5.11 8.20 4.56 10.13 4.29 1.76 19.76 4.87 3.17 2.84 0.62 5.97 7.33 0.99 3.33 3.86 3.65 3.02 3.58 11.65 0.90 1.05 2.66 37 I9_SR1 SilentIntronRegion 0 5.11 8.20 4.57 10.14 4.29 1.76 19.77 4.87 3.18 2.84 0.62 5.97 7.33 0.99 3.33 3.86 3.65 3.02 3.58 11.66 0.90 1.05 2.66 38 E10_Aa NovelBoundary 0 6.82 5.66 17.80 50.34 14.69 7.78 33.52 7.19 7.49 10.88 4.69 0.00 6.82 0.00 0.00 16.49 9.44 30.72 18.17 23.52 0.00 5.94 8.02 39 ER10a ExonRegion 0 17.41 40.85 24.19 47.36 27.92 80.59 87.86 41.33 54.00 41.41 107.16 120.58 166.39 111.78 28.63 85.56 104.67 159.08 72.99 122.11 82.87 81.45 99.77 40 E10_Da KnownBoundary 0 0.00 18.75 3.52 15.45 0.00 5.22 35.15 4.35 11.31 6.45 0.00 0.00 13.64 2.24 0.00 0.00 4.68 10.11 4.33 18.47 3.15 8.21 3.50 41 E10a_E11a KnownJunction 0 37.56 29.14 34.12 21.01 23.51 54.23 98.92 29.78 47.48 39.38 82.97 131.74 116.39 122.02 24.97 38.88 77.42 104.17 40.47 102.08 43.55 63.19 48.49 42 ER10b ExonRegion 1 2.97 13.33 5.39 20.52 6.09 4.20 26.00 2.65 7.21 5.02 2.33 9.68 15.86 2.00 1.92 3.21 4.54 3.94 3.49 12.62 1.41 2.16 3.09 43 E10_Db NovelBoundary 0 0.00 5.53 5.14 20.68 4.24 12.66 43.68 0.00 12.04 1.67 2.53 24.46 6.82 0.00 0.00 0.00 0.00 0.00 0.00 12.14 2.72 2.33 7.43 44 I10 Intron 0 8.15 11.96 4.90 22.30 6.10 7.21 22.69 4.54 3.44 2.36 1.15 6.22 9.69 1.16 2.61 3.63 3.22 2.20 3.28 9.69 0.54 1.86 2.71 45 I10_SR1 SilentIntronRegion 0 8.15 11.97 4.90 22.31 6.10 7.21 22.70 4.54 3.45 2.36 1.15 6.22 9.69 1.16 2.61 3.63 3.22 2.20 3.28 9.70 0.54 1.87 2.71 46 E11_Aa NovelBoundary 0 3.70 9.47 11.71 31.26 0.00 8.46 34.05 8.95 1.79 6.74 0.00 25.21 14.12 2.47 0.00 3.85 0.00 5.47 4.42 14.25 0.00 3.12 7.60 47 ER11a ExonRegion 0 26.81 43.91 27.90 52.08 23.03 77.70 82.98 32.93 37.16 29.49 96.61 103.56 110.78 96.93 24.99 67.71 90.80 82.72 50.80 107.23 55.93 76.40 69.17 48 E11a_E12a KnownJunction 0 29.19 72.55 26.29 25.77 12.14 68.82 55.42 19.51 18.61 30.92 83.28 123.04 96.75 62.22 15.20 43.75 110.05 93.89 55.91 82.07 65.67 67.30 54.80 49 ER12a ExonRegion 0 14.21 44.86 12.26 28.19 30.94 61.98 99.65 19.13 26.61 25.08 92.63 96.03 80.06 79.99 24.36 43.42 74.92 105.02 33.85 71.81 46.02 71.53 58.08 50 E12a_E13a KnownJunction 0 40.08 32.10 18.89 34.93 19.61 112.83 149.14 24.15 37.99 26.30 99.03 73.97 86.84 69.81 34.24 46.23 76.30 157.15 72.00 106.61 42.94 108.38 104.74 51 ER13a ExonRegion 0 24.18 47.04 20.38 43.71 19.59 108.44 95.94 25.41 32.20 26.60 78.32 107.60 88.02 91.66 39.07 47.60 80.45 129.85 49.87 92.50 52.94 70.57 79.25 52 E13a_E14a KnownJunction 0 24.37 52.29 15.08 58.90 48.39 102.90 147.02 33.68 37.56 24.79 97.39 82.68 113.95 75.93 45.00 58.96 104.07 106.12 43.58 104.89 62.02 69.44 76.49 53 E14_Aa NovelBoundary 0 0.00 6.58 17.50 8.29 0.00 0.00 13.82 14.99 3.85 4.08 2.58 0.00 27.27 0.00 0.00 0.00 4.77 4.52 12.05 2.94 0.00 0.00 0.00 54 ER14a ExonRegion 0 22.16 54.12 31.01 56.62 33.11 82.39 108.31 35.00 37.10 34.38 97.63 89.62 110.59 86.04 29.46 65.49 68.90 109.26 56.46 109.77 57.32 83.35 80.47 55 E14a_E15a KnownJunction 0 29.78 36.31 33.44 56.27 25.55 97.33 105.86 28.38 34.26 30.22 113.61 116.29 142.85 59.98 24.11 50.93 63.11 84.27 62.97 118.82 61.53 85.60 99.96 56 ER15a ExonRegion 0 21.18 44.89 21.23 42.47 31.58 93.57 86.94 26.75 32.43 27.64 99.56 99.56 111.74 78.95 19.38 52.48 67.48 69.29 43.44 74.98 40.28 89.32 57.94 57 E15a_E16a KnownJunction 1 25.49 44.99 14.01 28.23 27.33 60.14 75.34 15.94 15.91 22.78 98.39 54.32 122.56 129.73 10.75 24.87 65.54 45.23 36.52 61.62 36.88 102.50 71.36 58 E15a_E17a NovelJunction 0 6.67 12.63 1.80 4.13 7.30 37.54 11.88 6.90 8.10 0.00 7.05 0.00 18.67 24.25 4.45 15.04 4.30 3.81 4.80 6.07 0.00 26.88 28.00 59 ER16a ExonRegion 0 19.59 37.00 8.84 24.94 13.87 44.94 68.00 19.25 27.53 20.64 83.93 93.15 84.22 78.63 14.81 37.95 49.57 56.94 29.69 68.06 34.22 73.21 54.41 60 E16a_E17a KnownJunction 0 20.74 37.23 9.64 16.55 24.87 60.42 89.83 18.44 30.61 29.84 75.55 108.19 140.25 115.43 32.14 36.83 18.23 64.34 53.18 96.71 33.11 99.32 92.02 61 E17_Aa NovelBoundary 1 6.82 2.96 1.77 19.34 0.00 0.00 10.82 0.00 4.89 4.54 2.68 0.00 37.82 4.59 0.00 0.00 0.00 13.27 4.80 8.69 0.00 11.27 4.35 62 ER17a ExonRegion 0 23.93 35.48 10.93 26.59 28.16 59.89 63.75 24.13 33.66 22.87 93.88 85.65 80.69 82.25 30.56 44.62 63.29 78.73 40.33 87.62 53.37 71.83 66.21 63 E17a_E18a KnownJunction 0 21.26 12.10 6.65 9.22 0.00 31.46 61.56 9.49 5.87 7.44 66.07 49.52 48.05 77.64 24.85 27.17 61.99 31.34 31.72 60.40 54.55 50.09 45.33 64 E17a_E19a NovelJunction 0 10.08 21.44 0.00 4.59 16.64 15.45 19.96 16.96 13.60 4.35 18.58 6.00 26.13 12.54 10.01 8.12 25.53 44.94 8.75 43.78 32.56 19.29 48.40 65 E18_Aa NovelBoundary 0 13.93 12.17 4.26 6.06 7.30 4.77 49.37 4.19 1.56 2.04 6.63 6.30 13.31 18.31 8.90 3.25 4.02 5.97 3.76 15.40 0.00 8.21 7.43 66 ER18a ExonRegion 1 28.82 13.99 6.24 11.36 6.56 45.19 62.13 17.74 11.56 13.19 84.36 66.08 44.33 82.75 20.93 21.09 65.62 44.39 24.04 70.67 48.43 58.69 57.12 67 E18a_E19a KnownJunction 1 53.49 21.11 6.59 13.48 12.39 55.82 86.07 19.47 15.42 13.48 92.13 73.37 70.13 74.46 13.60 21.36 82.28 51.44 17.13 72.16 39.97 63.68 85.53 68 I18 Intron 0 8.79 12.98 4.60 22.03 12.25 16.48 35.32 5.53 8.16 5.48 9.90 19.05 17.33 9.86 3.57 6.72 9.26 6.34 6.57 13.70 2.90 14.67 7.82 69 I18_SR1 SilentIntronRegion 0 5.31 17.92 2.86 23.81 11.49 18.37 43.44 4.85 4.94 3.16 12.82 20.77 12.41 11.10 4.75 12.96 14.81 8.33 3.19 16.90 3.41 10.97 8.60 70 I18_AR1 ActiveIntronRegion 0 3.76 9.60 3.97 18.88 11.83 12.03 34.81 3.04 8.49 6.38 4.29 19.56 19.77 8.66 2.49 6.14 6.69 3.33 7.02 12.04 1.05 14.52 6.92 71 I18_AR2 ActiveIntronRegion 0 2.53 10.67 5.89 22.57 16.68 11.17 31.43 6.80 12.06 4.38 5.57 31.77 33.62 7.47 2.49 3.59 3.99 4.22 4.84 17.88 0.49 10.85 3.81 72 I18_SR2 SilentIntronRegion 0 10.43 9.17 6.39 20.81 11.03 15.88 31.14 5.32 7.54 3.34 10.41 14.45 13.63 10.58 2.27 4.31 3.95 7.81 6.73 11.84 3.36 13.44 7.18 73 I18_AR3 ActiveIntronRegion 1 35.75 25.97 8.36 42.93 19.21 33.38 47.42 15.88 13.67 10.30 20.72 21.21 23.52 10.29 6.03 5.12 21.90 8.37 8.51 20.47 5.57 30.14 11.96 74 I18_AR4 ActiveIntronRegion 1 14.37 18.43 2.86 18.18 10.16 23.12 24.65 9.27 7.02 6.36 22.58 16.04 9.78 12.58 7.88 6.86 14.70 13.09 9.11 12.32 8.42 13.04 10.38 75 E19_Aa NovelBoundary 0 135.06 70.97 21.61 70.35 17.06 94.32 55.20 23.66 24.45 28.96 40.69 38.41 18.99 33.79 15.20 26.49 47.22 49.62 33.98 29.66 19.34 72.93 22.54 76 ER19a ExonRegion 0 45.06 56.57 12.65 53.48 24.28 94.84 88.37 25.20 32.29 22.98 87.17 71.75 75.32 72.63 34.82 54.85 77.98 128.13 43.38 93.39 72.10 70.28 74.73 77 E19a_E20a KnownJunction 1 55.57 39.53 6.09 49.14 14.60 135.60 84.66 18.03 37.21 31.83 140.25 18.76 13.15 68.46 49.32 31.62 76.76 114.74 13.84 83.99 68.94 67.30 75.80 78 E20_Aa NovelBoundary 0 3.78 9.74 14.01 21.51 16.21 12.10 25.00 2.55 12.64 14.99 5.21 12.00 0.00 0.00 0.00 0.00 12.34 17.45 22.02 9.08 8.90 2.57 0.00 79 ER20a ExonRegion 0 49.99 60.72 36.35 80.82 31.99 114.25 80.65 42.09 51.60 54.63 119.92 83.13 101.49 105.39 42.81 76.49 81.95 172.05 54.57 101.04 82.95 87.13 93.10 80 E20_Da NovelBoundary 0 3.04 27.89 14.81 13.78 8.66 29.70 27.34 2.42 13.05 8.76 30.38 12.60 5.84 22.07 8.90 20.08 12.53 22.55 0.00 23.46 6.30 11.08 14.43 81 E20a_E21a KnownJunction 0 17.26 60.32 22.77 67.02 41.17 62.46 74.33 23.00 21.27 23.80 46.59 24.16 45.45 70.52 18.91 62.55 42.36 59.03 27.39 54.78 45.84 47.76 22.96 82 E20a_E22a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 19.32 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 3.84 83 I20 Intron 0 9.87 28.79 6.49 12.19 16.22 12.61 29.25 8.41 7.72 4.68 12.28 24.83 26.92 12.28 6.34 8.66 14.81 10.35 6.68 19.35 2.31 17.61 7.87 84 I20_AR1 ActiveIntronRegion 0 5.31 18.14 5.60 6.23 2.24 8.69 18.43 4.31 7.69 2.38 11.24 16.32 17.30 8.89 5.85 9.08 18.40 15.57 3.55 20.14 2.42 15.10 10.64 85 I20_SR1 SilentIntronRegion 0 11.11 31.70 6.75 13.81 19.98 13.69 32.20 9.52 7.75 5.30 12.59 27.16 29.55 13.22 6.48 8.58 13.91 8.99 7.53 19.19 2.29 18.33 7.16 86 E21_Aa NovelBoundary 0 30.15 23.42 24.93 24.67 29.29 29.76 64.30 9.94 7.61 7.71 21.79 30.46 39.93 17.25 15.08 11.62 34.60 37.14 24.57 35.09 6.30 10.47 17.16 87 ER21a ExonRegion 0 65.25 75.67 55.79 80.97 54.13 109.35 95.07 42.55 36.11 38.45 84.91 66.04 75.11 90.27 46.06 66.28 63.30 113.61 51.93 73.81 59.50 68.60 59.89 88 E21a_E22a KnownJunction 0 188.18 166.42 50.18 115.87 42.87 88.64 84.79 40.50 45.66 42.07 103.39 40.81 63.63 92.30 50.81 35.38 73.40 116.40 27.48 85.59 62.64 59.83 58.47 89 E22_Aa NovelBoundary 0 16.37 30.46 8.10 10.26 11.54 8.06 8.13 0.00 5.64 4.30 4.90 0.00 6.49 2.41 0.00 4.02 0.00 11.28 3.76 9.40 3.15 0.00 8.71 90 ER22a ExonRegion 0 106.47 175.33 71.20 127.54 91.08 118.82 152.23 44.10 37.44 39.29 57.84 56.02 53.49 54.39 34.69 38.45 39.97 53.47 30.92 56.76 21.18 58.68 34.18 91 IG12_AR1 ActiveIntergenicRegion 0 30.86 67.66 23.70 38.98 23.21 32.60 33.80 13.00 8.83 9.36 12.36 23.51 8.52 7.66 9.54 3.84 5.08 3.57 5.29 16.36 1.08 18.46 6.14