Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GDPD5 Gene 0 46.32 4.92 76.76 40.99 25.78 151.81 36.59 121.09 102.13 34.72 29.66 3.09 9.48 45.48 9.77 9.42 6.10 27.35 12.90 32.49 2.75 14.21 6.98 2 376270 Transcript 0 0.15 0.13 1.17 0.70 0.00 4.85 1.10 2.51 3.27 1.51 2.17 0.10 0.21 3.00 0.50 0.84 0.21 1.72 0.33 1.85 0.28 0.71 1.66 3 336898 Transcript 0 36.60 4.11 77.25 39.94 30.88 135.80 29.96 116.32 83.35 24.58 22.53 1.83 6.94 36.42 8.11 9.10 4.72 21.71 12.66 28.27 2.08 20.31 3.45 4 376282 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 443276 Transcript 0 1.85 0.51 6.74 4.26 3.34 21.55 5.79 14.69 15.74 5.16 6.04 0.00 2.93 7.11 1.45 0.74 2.06 2.77 0.80 4.79 0.83 2.08 1.10 6 443415 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.46 0.39 3.29 1.84 0.00 14.55 3.21 7.52 8.44 4.54 6.50 0.31 0.63 8.99 1.49 2.24 0.63 5.17 0.99 5.54 0.84 2.01 4.99 8 E1_Ab KnownBoundary 0 10.74 0.00 9.22 8.86 0.00 93.47 28.93 18.48 41.55 12.60 9.90 5.55 5.84 18.72 0.00 0.00 0.00 17.24 4.71 11.51 0.00 0.00 0.00 9 ER1b ExonRegion 0 2.81 1.00 19.97 11.18 4.92 62.73 15.10 34.29 42.93 16.82 14.15 2.40 1.06 32.17 3.85 1.53 1.64 13.78 8.07 15.22 1.70 5.96 5.93 10 E1a_E2a KnownJunction 0 7.04 3.16 21.70 16.85 12.05 127.88 25.79 54.01 83.91 37.58 19.32 0.00 0.00 21.48 0.00 7.26 4.58 10.61 8.66 16.17 3.03 11.63 11.27 11 ER2a ExonRegion 0 10.20 2.06 20.15 10.89 13.09 102.76 28.73 65.27 74.39 26.04 17.44 2.06 4.63 34.22 9.29 3.68 5.31 4.27 11.11 25.76 2.13 13.91 12.55 12 E2a_E3a KnownJunction 0 0.00 0.00 16.71 7.19 14.86 75.13 13.34 43.00 57.81 16.06 6.90 12.60 0.00 16.89 4.45 4.27 0.00 1.82 8.28 8.82 2.53 5.33 7.94 13 ER3a ExonRegion 0 7.98 1.70 23.70 17.52 7.11 92.29 19.62 59.33 86.50 21.04 28.58 6.39 9.23 47.05 6.56 12.08 4.82 9.57 10.34 17.75 2.13 11.78 5.97 14 E3_Ab KnownBoundary 0 23.78 3.16 45.74 38.39 8.40 149.35 38.51 102.03 133.27 34.52 40.69 0.00 26.30 52.86 21.63 19.65 17.39 24.66 24.28 39.12 0.00 23.21 7.85 15 ER3b ExonRegion 0 8.81 1.79 39.54 20.70 16.68 99.74 31.33 76.78 87.00 28.25 32.58 2.61 10.23 47.42 13.93 9.22 12.72 13.52 13.07 27.77 2.85 18.32 7.97 16 E3a_E4a KnownJunction 0 20.08 0.00 51.95 34.29 7.56 142.02 39.70 115.87 142.16 42.55 44.27 6.30 13.64 77.93 0.00 14.44 16.74 20.52 11.95 26.14 0.00 37.78 9.90 17 E3a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 13.84 0.98 50.92 28.31 19.73 167.03 34.60 118.08 119.68 37.12 44.79 6.16 12.63 73.98 15.98 10.17 13.90 24.94 12.71 41.96 1.93 20.27 13.02 19 E4a_E5b KnownJunction 0 30.38 6.12 64.81 41.92 30.65 217.60 66.38 124.13 125.95 39.49 54.70 0.00 21.26 51.98 8.90 7.86 18.51 20.15 0.00 41.74 5.93 19.96 11.10 20 ER5a ExonRegion 0 3.70 1.02 13.48 8.52 6.69 43.09 11.58 29.38 30.26 10.32 12.08 0.00 5.86 14.21 2.90 1.49 4.13 5.54 1.59 9.57 1.65 4.17 2.20 21 ER5b ExonRegion 0 14.63 5.20 63.40 35.26 20.20 177.86 35.96 107.63 114.16 42.23 39.70 1.96 19.01 55.25 7.74 7.64 9.44 29.80 3.66 37.47 7.37 15.44 5.30 22 E5a_E6a KnownJunction 0 17.26 3.09 53.96 25.80 24.62 181.43 32.15 100.18 115.42 44.24 40.22 0.00 26.78 73.22 0.00 25.12 4.77 35.57 0.00 31.13 6.05 16.29 11.52 23 ER6a ExonRegion 0 16.40 3.32 48.48 24.42 23.59 156.03 34.25 80.32 83.43 28.88 30.57 0.00 15.09 53.33 6.14 12.48 4.62 22.70 4.83 25.25 4.04 20.11 7.64 24 E6_Da NovelBoundary 0 27.71 0.00 7.07 11.75 11.63 13.46 4.50 4.72 27.69 18.43 18.64 6.30 0.00 14.30 0.00 7.78 8.32 11.15 8.19 15.53 2.84 0.00 7.85 25 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E6a_E8a KnownJunction 0 10.67 3.35 55.85 27.14 32.43 126.23 25.13 87.94 56.97 16.44 12.21 0.00 5.84 33.79 0.00 3.93 0.00 20.60 8.38 17.45 0.00 24.86 4.01 27 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I6 Intron 0 11.25 1.38 7.13 5.18 6.27 27.03 13.04 19.32 33.65 12.82 11.88 4.02 10.13 21.79 2.13 4.03 2.58 8.85 5.97 17.96 0.34 3.15 2.29 29 I6_AR1 ActiveIntronRegion 0 8.71 0.00 3.76 1.67 3.30 9.80 8.16 9.53 18.93 3.51 8.74 4.40 1.59 12.57 1.68 1.22 1.36 1.52 1.31 14.88 0.91 4.28 3.62 30 I6_SR1 SilentIntronRegion 0 11.64 1.58 7.64 5.71 6.72 29.60 13.77 20.79 35.87 14.20 12.37 3.97 11.39 23.18 2.20 4.44 2.76 9.94 6.67 18.45 0.26 2.99 2.11 31 E7_Aa NovelBoundary 0 3.78 0.00 13.81 2.06 12.56 23.11 31.53 11.71 33.65 7.28 5.26 0.00 0.00 29.14 0.00 0.00 0.00 6.34 9.51 18.66 0.00 0.00 0.00 32 ER7a ExonRegion 0 0.00 0.00 0.22 0.25 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.13 0.00 33 E7_Da NovelBoundary 0 2.89 0.00 7.57 3.93 8.15 20.90 10.25 29.33 39.96 6.02 9.42 0.00 0.00 11.95 0.00 0.00 4.21 11.57 0.00 9.65 0.00 0.00 8.19 34 I7 Intron 0 11.21 2.28 15.25 12.92 11.37 32.09 14.31 22.83 32.33 10.19 9.89 1.66 3.59 17.44 2.78 3.83 1.95 8.25 2.90 12.89 0.30 3.35 2.05 35 I7_AR1 ActiveIntronRegion 0 0.74 0.89 5.70 8.32 4.28 14.73 6.68 14.57 27.85 8.72 8.05 0.00 1.68 13.55 2.70 0.00 0.00 10.75 2.56 21.79 0.00 1.82 0.00 36 I7_SR1 SilentIntronRegion 0 11.03 3.31 14.15 14.34 14.33 34.78 20.27 27.01 40.22 11.66 10.15 2.41 4.79 19.69 2.79 3.60 3.63 9.25 1.71 17.65 0.23 2.97 2.55 37 I7_AR2 ActiveIntronRegion 0 14.23 2.97 26.37 12.07 6.01 23.12 6.85 20.71 22.42 5.55 9.86 2.90 9.81 11.74 0.00 2.78 3.36 6.10 4.41 17.16 0.00 2.87 2.13 38 I7_SR2 SilentIntronRegion 0 10.74 3.74 12.32 12.45 15.85 42.22 17.83 24.36 21.26 9.50 10.48 0.99 3.12 18.10 2.31 5.83 1.29 8.26 5.90 13.96 0.21 3.79 1.44 39 I7_AR3 ActiveIntronRegion 0 11.86 1.69 16.41 14.88 7.54 32.73 12.76 22.15 35.95 9.65 9.52 1.03 3.78 17.37 2.80 2.85 1.25 7.60 1.68 10.51 0.50 3.39 2.07 40 I7_SR3 SilentIntronRegion 0 11.71 0.97 15.88 10.85 8.73 20.26 8.85 12.32 26.87 9.25 7.25 0.00 0.47 14.06 4.31 4.00 1.93 5.78 3.38 6.43 0.79 3.35 1.93 41 I7_AR4 ActiveIntronRegion 0 13.47 1.02 21.73 13.87 13.53 37.16 10.93 31.66 39.22 13.75 13.97 3.68 3.23 19.98 3.32 5.08 0.51 11.42 3.04 10.71 0.00 4.68 2.61 42 I7_SR4 SilentIntronRegion 0 9.41 0.84 5.80 2.27 4.26 14.19 5.33 5.16 7.36 2.02 5.14 1.83 3.55 9.94 0.00 2.61 1.07 1.94 3.21 1.85 0.00 1.86 1.15 43 E8_Aa NovelBoundary 0 23.34 5.72 29.27 24.84 4.33 60.14 8.39 34.50 54.57 7.52 9.69 0.00 20.13 22.31 0.00 3.25 7.67 25.08 4.33 2.62 0.00 0.00 3.50 44 ER8a ExonRegion 0 15.93 2.14 79.43 32.06 20.54 110.58 21.68 94.89 71.05 20.33 23.73 3.03 6.80 32.24 11.75 12.63 6.85 15.66 17.84 33.30 3.09 18.70 1.17 45 E8_Ab KnownBoundary 0 27.63 3.35 125.01 48.71 15.87 127.65 25.79 140.84 111.57 34.60 26.22 7.65 6.01 28.37 15.45 19.57 3.74 23.09 19.95 56.57 8.71 13.84 0.00 46 ER8b ExonRegion 0 20.88 5.79 91.32 50.77 15.10 142.20 28.27 112.17 114.09 48.54 43.74 4.77 6.04 39.36 9.10 8.26 6.66 21.39 30.40 46.34 8.59 12.25 4.78 47 E8a_E9a KnownJunction 0 27.56 14.27 85.39 66.62 44.82 234.41 57.19 127.90 150.52 64.58 62.59 0.00 13.64 33.08 9.52 4.10 13.18 34.86 50.45 45.57 11.37 8.27 0.00 48 ER9a ExonRegion 0 22.09 6.36 83.82 41.63 21.41 163.75 38.45 110.05 121.23 52.40 38.88 3.36 7.48 51.11 9.11 9.33 5.72 27.28 18.03 35.20 3.35 19.17 8.31 49 E9a_E10a KnownJunction 0 51.42 3.35 107.12 47.25 4.33 215.22 36.88 148.11 163.51 65.92 36.96 6.30 25.81 65.87 11.37 8.46 3.93 41.49 22.40 45.00 5.07 31.72 15.37 50 ER10a ExonRegion 0 44.24 5.88 109.77 47.27 21.39 252.29 46.51 148.75 148.28 58.58 48.69 4.69 18.92 60.93 14.41 15.41 6.87 53.48 35.19 41.37 3.86 23.79 9.96 51 E10a_E11a KnownJunction 0 14.74 2.83 113.45 59.30 10.95 205.11 32.06 152.96 124.56 63.50 24.06 0.00 33.11 63.16 10.26 7.86 3.74 44.31 22.49 51.07 5.68 9.12 8.71 52 ER11a ExonRegion 0 36.31 1.89 93.47 43.35 19.89 203.42 26.53 115.41 120.94 52.27 29.76 0.31 20.68 57.14 9.79 17.69 6.48 32.68 14.28 51.55 0.88 12.90 12.17 53 E11a_E12a KnownJunction 0 72.83 2.96 109.75 61.33 32.26 329.98 48.31 127.41 169.27 55.79 43.38 0.00 33.11 55.45 4.45 15.72 4.39 39.92 17.22 33.43 0.00 30.25 28.17 54 ER12a ExonRegion 0 48.93 5.27 90.99 31.49 24.70 170.01 33.21 107.02 100.17 37.43 33.17 9.46 19.60 55.50 12.20 12.66 3.63 28.87 16.16 33.93 2.19 13.63 7.29 55 E12_Da NovelBoundary 0 19.71 5.92 25.04 5.03 12.48 51.11 12.85 22.55 28.93 6.15 1.95 0.00 0.00 14.30 0.00 3.76 0.00 5.72 0.00 11.89 0.00 3.00 0.00 56 E12a_E13a KnownJunction 0 87.27 15.39 118.15 69.72 32.85 187.16 45.27 176.66 153.50 59.61 37.64 26.11 6.82 75.76 4.45 30.50 4.68 42.24 18.35 38.41 0.00 28.78 11.27 57 I12 Intron 0 9.94 1.87 19.00 7.85 8.62 35.80 11.09 30.35 24.74 6.45 5.69 0.00 2.21 8.19 1.32 3.56 0.61 8.88 2.05 5.68 0.41 1.53 0.81 58 I12_AR1 ActiveIntronRegion 0 10.69 2.47 20.16 7.91 11.37 43.19 12.44 29.98 27.07 5.95 5.92 0.00 2.77 8.88 1.27 3.52 0.45 8.82 2.63 6.39 0.36 1.43 0.40 59 I12_SR1 SilentIntronRegion 0 8.51 0.66 16.82 7.82 3.09 21.03 8.46 31.44 20.25 7.54 5.30 0.00 1.09 6.85 1.44 3.68 0.93 9.11 0.90 4.28 0.50 1.76 1.64 60 E13_Aa NovelBoundary 0 20.82 3.35 32.79 21.24 3.99 31.06 6.01 49.33 29.20 14.05 11.21 0.00 0.00 7.00 4.45 0.00 0.00 21.31 0.00 9.59 0.00 8.33 0.00 61 ER13a ExonRegion 0 47.02 5.79 109.98 49.43 38.17 239.89 50.45 167.03 137.67 43.52 32.56 5.32 17.37 61.03 9.64 14.93 4.02 44.41 14.63 34.69 2.10 16.23 4.85 62 E13a_E14a KnownJunction 0 44.01 2.63 92.60 56.80 25.38 166.44 52.64 165.04 133.19 35.22 28.27 6.30 6.82 42.73 15.70 12.22 9.44 45.47 14.21 32.73 0.00 2.94 0.00 63 ER14a ExonRegion 0 50.86 5.11 110.90 47.72 22.13 138.50 38.08 157.33 129.81 41.29 34.82 0.44 11.96 53.32 12.76 10.21 7.71 36.12 19.15 49.15 4.18 20.20 7.27 64 E14a_E15a KnownJunction 0 90.53 8.55 99.26 71.95 47.37 252.47 72.69 201.10 156.42 47.33 55.28 0.00 0.00 70.16 0.00 7.52 17.20 23.26 12.14 32.66 0.00 10.84 8.11 65 ER15a ExonRegion 0 75.52 9.33 120.39 58.02 46.63 233.71 69.15 214.92 145.54 49.58 47.16 2.72 13.18 57.52 7.92 15.72 7.29 46.84 21.42 54.53 1.52 16.68 7.44 66 E15a_E16a KnownJunction 0 98.09 6.38 112.80 50.01 30.56 221.58 66.60 167.50 121.06 35.86 35.85 0.00 19.32 54.45 4.45 7.26 4.77 28.89 13.65 75.10 0.00 19.47 10.93 67 ER16a ExonRegion 0 63.29 5.39 106.67 62.77 23.53 162.28 45.38 165.06 105.77 30.70 32.93 3.70 9.55 61.70 10.38 8.16 4.81 39.72 10.32 43.94 0.64 11.92 14.33 68 E16a_E17a KnownJunction 0 90.91 5.99 115.49 71.55 7.98 142.08 52.73 151.56 81.19 28.90 21.22 7.65 13.64 80.23 9.27 4.36 8.70 27.77 30.97 29.59 3.15 6.18 11.44 69 ER17a ExonRegion 0 69.00 10.33 130.41 67.93 46.96 201.72 53.35 156.34 111.50 48.11 27.85 5.86 8.80 53.29 7.45 9.78 7.95 41.32 14.24 50.61 3.35 10.14 8.81 70 E17a_E18a KnownJunction 0 158.25 14.67 140.65 93.33 81.49 396.14 120.03 206.93 179.05 72.20 41.69 12.60 20.45 51.27 8.90 8.54 3.55 29.47 17.22 61.55 6.18 17.21 7.77 71 ER18a ExonRegion 0 123.24 10.43 112.31 69.03 43.80 218.06 69.27 169.52 142.50 45.96 30.81 3.78 6.55 53.72 14.56 7.84 10.35 33.85 11.57 35.27 3.61 11.83 10.50 72 E18_Da KnownBoundary 0 182.03 21.71 130.54 61.00 77.42 232.20 49.68 205.74 163.11 55.44 46.33 0.00 6.82 44.79 14.46 4.27 11.87 48.91 8.94 34.90 2.90 15.92 0.00 73 ER18b ExonRegion 0 83.21 6.85 96.46 60.62 39.66 170.58 43.06 166.14 122.02 36.98 31.66 2.44 8.19 43.24 12.57 10.75 7.31 28.87 11.78 34.05 3.16 17.37 5.18 74 IG50_AR1 ActiveIntergenicRegion 0 0.21 0.20 1.38 1.78 0.52 36.64 0.64 4.73 5.26 0.33 0.00 0.69 0.00 0.00 0.00 0.00 0.00 8.96 1.24 1.24 0.00 0.00 0.00 75 IG50_SR1 SilentIntergenicRegion 0 0.11 0.00 1.37 0.87 0.72 17.17 0.85 1.93 5.02 0.18 0.00 0.19 0.00 0.07 0.00 0.00 0.00 3.20 0.68 1.02 0.24 0.00 0.00