Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KLHL35 Gene 0 3.83 5.21 8.72 6.63 3.43 105.41 6.58 6.88 18.55 1.80 0.44 1.13 3.92 1.09 2.67 2.51 1.39 14.61 7.05 9.04 5.88 3.62 4.75 2 441792 Transcript 0 0.24 0.00 0.52 0.12 0.31 11.20 0.23 0.53 1.97 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 2.19 0.00 0.49 0.13 0.52 0.00 3 376292 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 460787 Transcript 0 2.56 3.06 4.35 3.15 2.55 39.88 4.33 2.58 5.39 1.07 0.42 0.90 2.41 0.97 2.61 2.37 1.14 4.37 4.67 7.82 2.48 2.40 2.73 5 IG50_AR1 ActiveIntergenicRegion 0 0.21 0.20 1.38 1.78 0.52 36.64 0.64 4.73 5.26 0.33 0.00 0.69 0.00 0.00 0.00 0.00 0.00 8.96 1.24 1.24 0.00 0.00 0.00 6 IG50_SR1 SilentIntergenicRegion 0 0.11 0.00 1.37 0.87 0.72 17.17 0.85 1.93 5.02 0.18 0.00 0.19 0.00 0.07 0.00 0.00 0.00 3.20 0.68 1.02 0.24 0.00 0.00 7 ER1a ExonRegion 0 0.48 0.00 1.04 0.23 0.61 22.40 0.45 1.05 3.94 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 4.37 0.00 0.97 0.25 0.00 0.00 8 E1_Ab KnownBoundary 0 0.00 0.00 1.60 0.00 0.00 10.56 0.00 2.55 3.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.00 0.00 0.90 0.00 0.00 30.13 0.01 1.98 4.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.53 0.00 0.86 2.68 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 0.00 5.12 0.00 0.00 58.72 0.00 2.51 7.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.47 0.00 0.00 0.00 0.00 0.00 11 ER1c ExonRegion 0 0.00 1.99 3.92 1.17 0.44 76.60 0.82 5.38 11.27 0.22 0.00 0.00 0.00 0.44 0.00 0.00 0.54 6.78 0.80 2.48 2.72 3.18 1.44 12 E1a_E2a KnownJunction 0 0.00 0.00 1.74 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.20 0.00 0.00 0.00 13 E1a_E2b KnownJunction 0 0.00 0.00 6.39 5.99 0.00 70.02 1.72 5.96 14.96 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.01 4.80 0.00 3.15 8.94 0.00 14 I1 Intron 0 0.71 2.46 2.94 1.77 2.87 113.35 2.49 2.42 6.18 0.34 0.00 0.00 1.87 0.18 0.19 0.80 0.00 6.72 2.35 2.71 1.48 0.56 2.36 15 I1_AR1 ActiveIntronRegion 0 0.24 2.46 3.46 1.94 3.17 120.19 2.77 2.67 6.02 0.42 0.00 0.00 2.31 0.22 0.24 0.98 0.00 6.82 2.26 2.61 1.00 0.69 2.67 16 I1_SR1 SilentIntronRegion 0 2.74 2.46 0.72 1.06 1.62 85.27 1.29 1.35 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.36 2.76 3.18 3.60 0.00 1.05 17 E2_Aa NovelBoundary 0 0.00 3.16 5.50 2.03 0.00 96.65 0.00 2.55 9.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.56 9.22 0.00 3.15 0.00 4.10 18 ER2a ExonRegion 0 0.00 0.00 2.21 0.16 0.00 16.72 0.05 0.28 4.69 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 3.44 6.98 0.97 2.33 0.00 19 ER2b ExonRegion 0 0.00 2.25 13.59 5.96 1.60 139.99 2.23 11.08 36.81 0.36 0.00 0.00 2.37 0.00 0.54 0.00 1.83 26.55 11.10 4.05 13.08 5.28 4.48 20 E2_Da NovelBoundary 0 0.00 0.00 3.67 3.83 0.00 81.26 0.00 5.01 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.71 15.66 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 0.00 0.00 23.68 2.03 15.37 215.16 4.33 13.97 43.78 1.67 0.00 0.00 6.49 0.00 0.00 0.00 0.00 23.63 8.94 11.57 22.98 7.53 4.35 22 I2 Intron 0 1.12 1.57 1.68 3.04 0.90 50.84 2.69 1.74 1.69 0.25 0.00 0.59 1.51 0.19 0.10 0.00 0.16 5.37 2.46 2.67 1.17 0.30 1.84 23 I2_AR1 ActiveIntronRegion 0 0.41 1.17 2.11 1.95 0.51 41.62 2.04 1.49 1.77 0.00 0.00 1.67 1.38 0.00 0.00 0.00 0.64 1.95 1.84 1.64 1.70 0.00 0.00 24 I2_SR1 SilentIntronRegion 0 1.22 0.97 1.43 2.54 0.70 50.61 2.58 2.23 1.50 0.30 0.00 0.00 1.41 0.23 0.18 0.00 0.00 6.97 3.59 2.67 1.34 0.54 1.86 25 I2_AR2 ActiveIntronRegion 0 1.81 3.88 1.83 5.98 2.05 64.24 3.88 0.66 2.16 0.44 0.00 0.91 1.97 0.34 0.00 0.00 0.00 5.24 0.00 4.09 0.00 0.00 4.26 26 E3_Aa NovelBoundary 0 3.41 6.05 0.00 10.52 0.00 54.74 2.03 0.00 1.24 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 2.68 0.00 0.00 0.00 27 ER3a ExonRegion 0 1.81 7.60 20.43 10.91 3.93 197.83 8.36 10.23 36.42 2.17 0.00 0.00 6.27 0.57 0.05 0.00 0.00 24.92 6.26 10.69 10.48 2.64 5.53 28 E3_Da KnownBoundary 0 0.00 6.25 8.99 10.42 0.00 124.87 0.00 12.94 10.62 6.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.78 0.00 9.08 5.87 0.00 7.51 29 E3a_E3b KnownJunction 0 0.00 12.70 17.92 3.33 4.33 130.78 4.42 6.61 23.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.40 4.05 5.94 3.15 0.00 0.00 30 ER3b ExonRegion 0 7.67 9.18 9.09 9.29 7.65 100.01 12.94 7.48 11.48 3.16 1.26 2.71 7.23 2.92 7.83 7.10 3.41 11.77 10.56 10.27 6.48 4.87 8.20 31 E3_Ab KnownBoundary 0 3.41 6.64 9.46 7.09 4.16 94.21 11.48 5.50 8.74 1.48 0.00 0.00 6.82 0.00 0.00 0.00 0.00 6.47 0.00 7.99 4.94 0.00 3.67 32 ER3c ExonRegion 0 2.45 7.34 13.74 4.15 1.35 188.98 5.53 6.70 26.27 1.12 0.00 0.00 5.04 0.00 0.00 0.00 0.00 24.78 8.93 9.99 3.05 3.39 1.39 33 E3_Db NovelBoundary 0 13.63 6.71 3.19 7.26 0.00 5.68 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 0.00 0.00 2.90 0.00 0.00 34 E3b_E4a KnownJunction 0 0.00 6.45 19.34 1.90 0.00 227.03 6.54 8.67 29.40 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 31.88 4.52 15.47 3.15 5.27 0.00 35 I3 Intron 0 3.53 2.61 3.40 5.35 0.86 21.32 5.61 1.82 2.72 0.55 0.00 0.00 1.49 0.00 0.44 0.38 0.42 4.37 4.09 3.42 2.97 0.94 3.02 36 I3_AR1 ActiveIntronRegion 0 3.29 2.71 3.92 6.16 0.99 23.89 6.47 2.10 3.13 0.63 0.00 0.00 1.72 0.00 0.51 0.44 0.49 5.03 4.48 3.62 3.42 0.93 3.26 37 ER4a ExonRegion 0 6.28 6.60 18.39 8.95 2.79 238.69 4.98 10.00 42.37 4.18 0.00 0.00 3.28 0.36 0.55 0.80 0.89 26.98 7.06 21.47 7.01 5.96 7.96 38 E4a_E5a KnownJunction 0 0.00 5.85 15.40 11.75 0.00 218.17 0.00 15.81 67.68 3.33 0.00 0.00 6.82 0.00 0.00 0.00 0.00 28.35 3.86 10.99 2.47 5.63 0.00 39 E5_Aa NovelBoundary 0 3.70 2.76 1.83 0.00 0.00 8.23 27.20 0.00 1.71 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.69 0.00 6.39 2.90 0.00 12.12 40 ER5a ExonRegion 0 4.46 5.55 11.26 14.52 2.35 125.26 8.48 11.76 37.14 2.42 0.00 2.09 5.18 0.39 0.60 1.31 0.48 25.97 12.27 20.20 11.85 5.01 6.87 41 ER5b ExonRegion 0 11.26 0.41 1.08 6.00 0.00 19.00 6.41 1.73 3.61 1.01 0.00 0.00 1.69 0.00 0.00 0.00 0.00 2.73 5.86 5.19 0.00 4.17 0.00 42 ER5c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 43 IG49 Intergenic 0 33.03 27.08 27.58 44.17 11.51 25.26 34.49 9.33 7.50 9.62 12.05 9.82 6.49 6.84 8.46 9.51 7.17 35.00 19.62 30.68 10.83 11.13 13.61 44 IG49_SR5 SilentIntergenicRegion 0 44.32 25.46 29.95 46.57 6.49 21.64 19.27 8.32 7.36 8.85 5.08 0.84 1.09 3.95 3.73 7.35 3.49 35.42 13.02 31.20 10.25 7.11 8.38 45 IG49_AR9 ActiveIntergenicRegion 0 25.38 35.77 26.23 46.53 8.43 22.12 25.00 7.22 6.69 8.66 5.07 3.40 2.06 2.76 3.08 4.51 4.48 37.18 12.08 24.05 8.89 5.59 9.38 46 IG49_SR4 SilentIntergenicRegion 0 26.44 19.23 18.37 35.99 14.45 25.26 38.26 4.74 4.99 4.55 4.52 3.34 4.49 3.73 3.96 5.85 3.76 25.24 14.52 24.37 5.24 5.90 6.76 47 IG49_AR8 ActiveIntergenicRegion 0 28.68 22.03 35.05 47.90 6.69 21.28 26.59 11.50 10.80 10.74 5.37 3.88 2.84 5.89 4.03 13.66 6.37 47.77 17.55 31.20 14.55 12.03 13.66 48 IG49_SR3 SilentIntergenicRegion 0 27.39 17.83 19.42 36.51 9.62 14.59 27.03 8.10 6.72 6.29 5.68 4.02 2.75 3.08 4.19 7.05 4.76 33.61 15.34 21.86 8.70 6.98 14.58 49 IG49_AR7 ActiveIntergenicRegion 0 29.03 37.48 57.13 100.07 13.51 23.49 61.28 14.49 4.76 9.50 5.43 17.73 1.34 1.39 3.04 2.69 0.94 6.95 4.55 34.55 0.42 4.17 14.12 50 IG49_AR6 ActiveIntergenicRegion 0 16.93 36.42 57.48 102.09 7.05 19.50 38.27 18.86 6.18 8.45 5.45 13.78 9.81 3.25 2.90 0.81 0.00 3.70 6.37 35.59 2.20 3.60 14.68 51 IG49_AR5 ActiveIntergenicRegion 0 14.82 41.14 53.63 101.69 5.35 16.65 40.33 20.48 8.08 12.79 4.01 12.32 18.04 3.25 2.23 2.97 0.51 5.40 12.50 34.86 2.71 2.72 12.88 52 IG49_AR4 ActiveIntergenicRegion 0 9.95 40.06 47.42 93.90 5.35 16.32 33.76 23.51 9.63 15.48 3.87 11.69 23.45 2.60 2.32 2.97 3.30 7.39 19.75 40.43 7.49 4.17 12.63 53 IG49_AR3 ActiveIntergenicRegion 0 38.45 21.45 35.56 48.88 16.28 31.63 50.98 10.90 5.64 12.76 3.42 6.66 9.47 3.77 7.05 5.05 5.81 17.64 17.59 34.56 6.03 5.94 9.52 54 IG49_SR1 SilentIntergenicRegion 0 1.89 1.82 0.00 0.00 0.00 6.56 17.79 0.00 0.00 0.00 1.73 3.87 3.46 5.64 1.83 2.66 0.00 1.65 2.85 3.81 3.94 1.86 7.88 55 IG49_AR1 ActiveIntergenicRegion 0 46.88 56.27 53.07 67.85 26.12 60.48 82.58 21.28 14.11 25.76 60.12 55.34 31.48 29.81 40.00 29.48 27.61 55.96 58.25 68.45 26.46 41.12 34.82