Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SYTL2 Gene 0 20.33 10.20 17.85 12.25 11.06 11.94 6.75 11.63 10.69 7.72 0.31 3.68 1.64 0.69 1.55 0.22 1.47 0.90 1.14 1.24 25.11 8.52 5.20 2 438197 Transcript 0 0.58 0.00 0.08 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 389960 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 436296 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 316356 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 359152 Transcript 0 1.14 1.18 1.14 0.87 0.77 0.80 0.98 1.00 2.19 0.70 0.07 0.71 0.50 0.07 0.10 0.00 0.36 0.15 0.11 0.56 0.85 0.44 0.27 7 354566 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 389959 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 389956 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 389958 Transcript 0 4.41 1.32 1.12 3.29 4.24 8.02 4.38 3.27 3.91 1.06 0.30 0.04 0.01 0.01 0.01 0.00 0.54 1.17 1.00 0.35 49.54 5.91 5.95 11 IG18_AR1 ActiveIntergenicRegion 0 0.96 2.71 2.48 1.85 0.00 0.00 0.00 0.00 3.94 7.00 0.00 4.87 0.00 0.61 0.00 0.00 0.00 0.00 0.00 2.91 10.03 3.79 2.67 12 ER1a ExonRegion 0 3.74 2.66 9.85 3.85 4.34 2.73 4.96 5.30 9.49 4.94 0.52 5.99 1.57 0.78 1.11 0.00 1.79 0.25 0.00 2.33 16.64 7.33 3.11 13 E1a_E2a KnownJunction 0 6.67 9.74 9.93 0.00 15.62 0.00 2.21 9.28 16.67 2.87 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 32.74 5.63 3.41 14 ER2a ExonRegion 0 5.29 6.68 11.01 6.72 5.12 2.41 4.02 9.55 10.31 5.70 0.00 5.75 1.30 1.20 1.37 0.00 0.00 0.00 0.00 1.69 27.11 7.85 8.89 15 E2a_E3a KnownJunction 0 6.96 3.35 10.02 6.43 3.90 0.00 4.50 10.02 12.47 9.89 0.00 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 30.52 10.59 3.33 16 ER3a ExonRegion 0 2.41 1.75 8.36 6.74 1.95 5.65 2.37 5.55 9.27 9.23 0.00 5.89 0.00 1.00 0.32 0.00 2.21 0.00 0.00 2.94 21.99 7.98 4.69 17 E3a_E4a KnownJunction 0 3.78 2.83 12.83 5.59 3.82 2.16 3.80 0.00 10.07 12.97 0.00 31.06 0.00 0.00 4.45 0.00 3.93 0.00 0.00 6.52 16.25 8.45 0.00 18 ER4a ExonRegion 0 5.58 2.90 7.46 4.84 7.24 2.12 1.29 1.62 9.69 8.03 0.05 8.87 0.00 0.00 0.74 0.00 0.44 0.00 0.00 2.46 17.15 4.93 6.70 19 E4a_E5a KnownJunction 0 10.59 6.71 4.85 4.86 0.00 2.73 0.00 2.09 11.20 13.14 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 16.87 14.33 3.67 20 ER5a ExonRegion 0 7.46 4.63 7.18 7.84 9.96 6.93 4.86 6.39 14.23 10.43 0.85 5.76 2.43 1.16 1.87 0.00 1.50 0.00 2.28 2.58 16.11 6.83 6.11 21 E5a_E6a KnownJunction 0 3.11 2.57 6.50 5.49 10.87 10.79 10.47 8.01 21.18 10.72 0.00 7.65 6.82 0.00 0.00 0.00 0.00 0.00 7.91 3.07 23.29 8.21 4.10 22 ER6a ExonRegion 0 13.28 8.47 13.09 9.89 15.96 9.20 7.06 7.08 12.86 11.12 0.25 9.07 4.78 2.43 1.71 0.75 3.56 0.41 2.51 1.80 20.14 8.11 9.62 23 E6_Da NovelBoundary 0 12.74 0.00 1.83 0.00 0.00 0.00 3.93 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E6a_E7b KnownJunction 0 13.78 2.89 6.89 12.09 8.23 8.57 16.74 4.81 14.06 4.14 0.00 12.00 6.17 2.47 4.45 0.00 0.00 0.00 0.00 0.00 11.18 11.14 0.00 25 ER6b ExonRegion 0 0.58 0.00 0.08 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER7a ExonRegion 0 0.99 0.03 0.59 0.15 0.09 0.09 0.17 0.08 0.20 0.07 0.00 0.14 0.08 0.03 0.05 0.00 0.00 0.00 0.00 0.00 0.18 0.13 0.00 27 E7_Ab KnownBoundary 0 3.78 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER7b ExonRegion 0 16.90 0.43 8.58 7.66 7.16 10.18 9.10 3.99 19.22 4.44 0.00 7.13 4.16 0.94 3.31 0.00 4.42 0.08 0.00 1.53 21.17 5.34 4.01 29 E7_Da KnownBoundary 0 15.71 0.00 0.00 3.33 3.40 0.00 3.97 0.00 2.26 2.82 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 3.50 30 E7a_E8a KnownJunction 0 9.04 0.00 5.06 4.13 21.90 0.00 12.14 2.51 16.96 5.37 0.00 5.70 21.91 2.47 0.00 0.00 0.00 0.00 0.00 0.00 13.71 9.19 3.84 31 ER7c ExonRegion 0 1.30 2.33 1.70 1.58 1.45 1.51 1.78 1.92 4.18 1.32 0.14 1.27 0.93 0.12 0.15 0.00 0.72 0.30 0.23 1.13 1.52 0.74 0.55 32 E7_Ac KnownBoundary 0 0.00 0.00 0.00 1.53 0.00 0.00 4.28 1.81 1.79 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.00 33 E7_Ad KnownBoundary 0 0.00 3.09 0.00 0.00 0.00 0.00 0.00 0.00 1.71 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 34 ER7d ExonRegion 0 0.00 2.03 0.00 1.36 0.00 0.00 2.65 1.73 2.98 3.44 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.60 2.20 0.00 0.00 35 ER7e ExonRegion 0 1.65 3.59 3.92 3.17 1.95 5.39 1.40 1.28 2.99 2.51 0.10 1.19 0.52 0.26 0.00 0.46 0.86 0.69 1.08 0.78 0.37 0.83 0.82 36 E7_Ae KnownBoundary 0 0.00 5.39 5.23 3.30 0.00 14.08 4.46 0.00 1.79 2.79 0.00 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 3.93 37 ER7f ExonRegion 0 2.79 6.48 3.93 3.15 1.47 6.29 1.99 3.11 2.05 1.52 0.21 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.70 0.48 0.97 0.41 38 E7b_E8a KnownJunction 0 0.00 3.03 3.61 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 39 ER8a ExonRegion 0 9.52 5.24 18.45 7.64 26.23 10.97 12.51 11.05 19.10 11.12 0.00 7.56 6.25 2.80 4.72 0.00 3.66 1.32 1.59 2.90 19.55 7.33 4.52 40 E8_Da NovelBoundary 0 36.15 9.21 2.90 5.83 15.45 0.00 4.50 0.00 9.72 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.41 0.00 0.00 0.00 0.00 41 E8a_E9b KnownJunction 0 9.26 3.35 18.78 9.72 9.76 13.29 1.94 10.97 23.00 6.69 0.00 19.06 6.82 4.89 4.45 0.00 4.21 0.00 0.00 5.88 10.81 12.25 3.59 42 I8_AR1 ActiveIntronRegion 0 14.66 7.55 3.48 3.06 8.06 1.66 2.13 1.56 3.14 0.69 0.00 1.79 0.00 0.00 0.00 0.00 0.66 0.19 0.00 0.00 0.00 0.21 0.88 43 ER9a ExonRegion 0 4.41 1.32 1.12 3.29 4.24 8.02 4.38 3.27 3.91 1.06 0.30 0.04 0.01 0.01 0.01 0.00 0.54 1.17 1.00 0.35 49.54 5.91 5.95 44 E9_Ab KnownBoundary 0 3.41 0.00 2.57 1.73 0.00 19.99 8.61 10.31 7.96 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 41.14 2.27 19.72 45 ER9b ExonRegion 0 13.78 4.57 19.72 10.44 16.76 25.81 11.27 16.63 22.28 9.22 0.00 7.84 3.10 1.81 1.31 0.00 2.62 0.73 0.00 6.58 76.88 13.96 16.62 46 E9_Da NovelBoundary 0 2.89 2.76 5.50 1.83 0.00 0.00 2.21 1.68 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.17 0.00 3.84 47 E9a_E10a KnownJunction 0 21.63 0.00 24.01 8.26 24.62 18.06 1.94 8.09 15.91 9.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.59 13.72 8.45 48 E9a_E11a KnownJunction 0 10.00 0.00 0.00 1.53 10.44 2.16 0.00 1.85 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 49 E9a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.61 0.00 0.00 50 E9a_E13a NovelJunction 0 3.56 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.26 5.69 0.00 51 I9_AR1 ActiveIntronRegion 0 2.87 2.51 3.32 0.77 1.82 0.00 2.87 3.47 1.17 2.30 0.00 1.27 1.59 0.00 0.87 0.00 0.00 0.00 0.00 1.27 9.58 0.13 2.37 52 ER10a ExonRegion 0 8.51 0.38 25.61 10.08 10.54 15.70 5.54 8.25 14.87 10.68 0.00 3.07 4.10 0.00 1.93 0.00 0.00 0.00 0.00 0.00 64.69 17.84 9.36 53 E10a_E11a KnownJunction 0 13.78 2.63 18.42 15.08 4.33 14.03 12.19 12.16 19.01 13.70 0.00 18.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.84 14.51 11.87 54 I10_AR2 ActiveIntronRegion 0 4.55 1.87 0.22 1.51 1.79 5.08 2.21 0.00 1.57 1.62 0.00 1.33 0.59 0.21 0.00 1.77 1.01 0.00 0.00 0.65 15.26 3.24 2.87 55 E11_Aa NovelBoundary 0 7.04 10.92 4.94 0.00 0.00 12.21 2.03 1.85 5.50 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 14.64 0.00 3.67 56 ER11a ExonRegion 0 15.46 7.94 19.92 16.33 14.22 29.98 12.35 20.38 25.78 16.29 0.00 4.69 1.63 0.72 1.59 0.00 3.41 0.62 1.71 2.28 59.41 12.41 8.41 57 E11_Da NovelBoundary 0 0.00 3.03 3.25 2.06 0.00 0.00 3.36 0.00 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.96 0.00 0.00 58 E11a_E12a KnownJunction 0 7.41 8.75 3.02 2.06 0.00 2.90 0.00 10.02 5.93 2.69 0.00 6.60 6.49 0.00 4.45 0.00 0.00 2.07 0.00 0.00 17.67 6.12 4.35 59 E11a_E13a KnownJunction 0 15.93 0.00 20.79 10.85 11.71 15.73 26.63 13.14 20.25 10.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51.58 15.12 8.45 60 I11_SR1 SilentIntronRegion 0 1.92 1.95 1.28 1.91 0.74 2.22 1.74 0.77 2.56 0.60 0.00 0.44 0.39 0.30 0.23 0.00 0.33 0.09 0.16 0.30 7.86 1.48 0.59 61 ER12a ExonRegion 0 19.40 15.20 6.17 8.15 7.69 8.15 6.96 10.70 9.41 5.76 0.00 7.04 4.42 0.97 3.99 0.00 1.40 2.88 1.35 2.71 26.68 9.51 5.63 62 E12_Da NovelBoundary 0 3.41 6.18 0.00 5.36 0.00 0.00 2.25 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.12 2.82 0.00 63 E12a_E13a KnownJunction 0 14.60 14.73 7.10 5.06 3.90 13.06 0.00 6.53 5.96 5.00 0.00 6.30 5.84 0.00 0.00 0.00 0.00 6.63 0.00 0.00 26.19 8.51 0.00 64 I12_AR1 ActiveIntronRegion 0 0.00 2.71 0.61 3.38 1.78 0.61 0.44 0.86 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 8.08 0.69 0.00 65 E13_Aa NovelBoundary 0 10.59 0.00 0.00 6.26 0.00 0.00 1.85 2.55 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 3.12 0.00 66 ER13a ExonRegion 0 32.44 29.52 45.22 31.59 18.71 28.27 20.06 25.59 30.38 18.03 0.58 5.27 6.07 1.09 3.81 0.00 0.99 4.32 0.96 0.64 79.83 18.29 9.31 67 E13a_E14a KnownJunction 0 49.05 32.10 59.67 32.10 11.97 29.76 12.67 8.87 25.87 23.88 2.26 12.60 6.82 0.00 0.00 0.00 0.00 6.80 0.00 0.00 85.31 23.09 10.59 68 ER14a ExonRegion 0 43.71 28.23 44.30 25.66 17.74 30.18 18.16 12.62 22.95 22.44 0.08 9.96 7.47 1.09 2.90 0.00 2.60 1.31 1.58 0.00 70.78 23.18 9.78 69 E14_Da NovelBoundary 0 2.82 0.00 0.00 3.53 0.00 2.56 2.25 2.55 3.10 1.45 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 16.37 6.25 7.68 70 E14a_E15a KnownJunction 0 53.05 47.69 35.48 27.47 20.71 11.07 30.12 11.83 22.34 20.66 0.00 0.00 0.00 2.47 4.45 0.00 4.77 2.49 0.00 0.00 33.17 14.33 12.12 71 I14_SR1 SilentIntronRegion 0 2.52 2.43 2.11 1.82 0.00 2.73 0.33 1.54 1.10 1.02 0.58 2.13 0.00 1.23 0.71 0.00 0.00 0.00 0.00 0.00 8.44 3.73 1.75 72 ER15a ExonRegion 0 45.40 31.07 37.32 24.45 15.51 30.72 13.32 15.87 15.75 17.49 1.28 4.00 1.15 0.48 0.17 0.00 0.41 1.33 1.32 1.27 74.55 21.68 12.76 73 E15_Da NovelBoundary 0 3.33 0.00 1.39 0.00 0.00 0.00 6.76 5.01 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.83 0.00 3.84 74 E15a_E16a KnownJunction 0 44.97 15.92 37.64 36.53 15.87 57.75 20.05 34.38 9.81 12.81 2.21 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 118.12 11.21 7.77 75 I15 Intron 0 8.30 3.19 3.15 5.10 3.92 4.03 3.05 2.02 3.47 2.86 0.20 3.06 0.25 0.28 0.21 0.16 0.17 0.24 0.00 0.67 7.61 6.98 0.77 76 I15_AR2 ActiveIntronRegion 0 11.53 3.69 4.52 6.93 5.18 4.47 3.12 2.84 4.81 4.00 0.32 3.53 0.00 0.27 0.34 0.24 0.27 0.15 0.00 0.71 10.36 8.22 0.96 77 E16_Aa NovelBoundary 0 25.63 9.01 4.67 20.24 20.80 4.54 9.72 6.61 6.08 1.02 4.74 0.00 0.00 0.00 0.00 3.42 0.00 0.00 0.00 0.00 22.80 0.00 3.33 78 ER16a ExonRegion 0 59.13 17.71 40.41 31.57 18.83 43.50 18.38 25.51 14.73 14.55 2.32 10.69 0.00 0.74 4.08 0.00 4.26 2.13 1.25 1.37 121.40 30.38 14.31 79 E16a_E17a KnownJunction 0 63.12 30.32 38.35 30.30 19.95 58.60 6.27 20.21 20.11 11.39 2.05 0.00 0.00 0.00 4.45 0.00 0.00 3.36 0.00 0.00 142.34 10.96 16.73 80 ER17a ExonRegion 0 50.65 18.91 42.58 46.11 24.72 37.78 15.20 36.07 19.50 19.08 1.82 7.10 0.00 2.48 2.58 0.00 1.25 1.27 2.58 1.04 132.40 15.29 13.63 81 E17a_E18a KnownJunction 0 62.38 30.52 38.26 60.50 19.61 50.82 34.40 43.17 17.07 12.01 0.00 12.60 0.00 2.35 14.83 0.00 4.11 0.00 4.80 0.00 101.69 14.63 16.73 82 I17_SR1 SilentIntronRegion 0 11.06 3.43 1.85 1.71 6.78 4.34 1.57 6.09 4.66 1.44 0.00 1.33 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.72 7.37 3.16 0.50 83 E18_Aa NovelBoundary 0 13.41 0.00 18.36 0.00 4.33 4.88 4.33 6.86 1.16 2.71 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 84 ER18a ExonRegion 0 93.45 22.11 48.11 44.00 23.98 44.90 19.36 50.11 24.22 19.81 0.00 12.08 2.32 2.07 8.65 0.74 3.16 3.87 1.90 0.55 122.46 21.12 17.59 85 E18a_E19a KnownJunction 0 72.24 23.09 56.62 45.28 47.11 70.19 31.36 56.81 19.04 17.22 0.00 0.00 0.00 0.00 4.45 0.00 4.49 9.12 0.00 0.00 157.59 14.33 36.36 86 ER19a ExonRegion 0 117.53 49.14 67.65 47.76 48.01 43.18 23.58 50.56 30.06 22.73 0.99 4.19 1.78 0.50 4.55 0.25 2.43 3.26 3.18 2.17 74.56 30.63 14.40 87 E19_Da KnownBoundary 0 125.36 32.63 83.59 41.85 32.26 24.93 20.84 49.54 31.05 18.78 0.00 6.15 0.00 0.00 4.45 0.00 3.65 0.00 4.14 0.00 68.14 28.41 4.35 88 ER19b ExonRegion 0 45.45 15.10 67.27 33.03 29.52 15.42 12.21 35.46 21.55 15.81 0.38 1.84 1.91 0.58 5.51 0.00 1.86 0.45 1.34 0.21 24.01 24.54 7.42