Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 USP35 Gene 0 9.92 8.34 31.10 29.71 8.25 55.55 19.91 23.86 32.69 18.13 19.64 7.68 7.98 19.29 21.64 22.76 15.07 39.71 23.47 22.01 39.34 29.06 33.12 2 263311 Transcript 0 11.92 15.59 27.40 28.87 8.38 54.18 18.51 24.54 35.60 18.06 27.67 13.07 17.46 20.43 26.40 33.08 19.80 46.33 36.45 26.26 46.58 40.75 44.75 3 441408 Transcript 0 0.79 0.00 0.61 0.00 0.00 0.92 0.33 0.00 2.45 0.29 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 2.68 2.21 3.50 4 ER1a ExonRegion 0 0.00 1.26 4.53 1.26 0.00 9.50 2.20 4.81 4.97 5.31 9.62 0.74 1.60 5.31 7.29 5.55 7.53 7.24 5.28 7.50 15.52 8.21 9.13 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 6 ER2a ExonRegion 0 0.48 0.55 5.07 3.20 0.41 11.81 3.53 7.50 8.24 4.31 6.83 2.00 1.59 7.54 6.21 8.97 6.07 12.22 4.38 6.15 17.58 8.33 11.81 7 E2a_E3a KnownJunction 0 0.00 14.93 27.67 15.25 0.00 38.67 5.96 22.10 27.89 7.31 26.32 6.90 19.97 22.13 4.45 23.16 13.65 16.58 15.81 11.63 36.33 31.47 24.24 8 ER3a ExonRegion 0 1.99 10.70 24.60 14.55 1.21 37.82 13.68 19.49 29.95 12.87 16.03 8.95 11.46 19.82 19.37 28.67 17.27 32.54 26.78 23.87 39.09 29.73 26.54 9 E3a_E4a KnownJunction 0 3.78 5.99 21.91 8.82 3.40 5.11 12.63 6.37 28.10 14.64 4.84 5.40 6.82 0.00 8.90 28.20 0.00 39.30 21.93 22.31 14.83 16.59 21.60 10 I3 Intron 0 3.98 4.55 4.17 12.07 3.26 13.04 7.33 7.72 10.47 6.16 5.50 3.48 3.07 9.84 8.42 9.97 6.71 8.31 5.98 7.78 13.54 11.01 14.77 11 I3_AR1 ActiveIntronRegion 0 0.00 2.03 2.45 4.54 0.00 3.67 0.00 4.61 3.91 3.63 5.80 0.00 4.69 4.87 0.48 14.37 4.40 5.85 8.49 8.51 11.02 2.08 3.43 12 I3_SR2 SilentIntronRegion 0 2.69 2.40 2.50 9.34 2.44 10.33 5.37 8.06 6.25 5.38 4.77 1.13 2.30 4.95 7.14 5.43 4.49 11.65 6.67 9.53 11.68 5.60 6.71 13 I3_AR2 ActiveIntronRegion 0 4.59 6.04 5.75 16.16 4.54 17.21 9.17 9.89 14.53 7.86 7.01 5.22 4.17 13.94 11.17 13.40 8.74 9.49 7.29 8.91 16.25 15.60 21.16 14 E4_Aa NovelBoundary 0 6.89 5.53 14.49 37.29 3.57 40.77 8.39 10.10 18.98 29.92 12.58 0.00 14.28 19.48 10.63 14.95 4.77 20.44 4.24 8.69 25.95 25.72 36.36 15 ER4a ExonRegion 0 9.80 11.31 39.83 48.80 5.87 43.79 21.52 39.22 48.44 28.54 40.20 25.44 22.37 27.19 38.59 44.95 30.24 65.42 51.21 38.05 61.31 62.68 79.99 16 E4a_E5a KnownJunction 0 27.41 11.71 51.00 55.47 7.56 80.98 26.90 47.36 60.07 26.00 59.86 24.16 54.38 32.73 50.19 40.84 14.12 56.38 57.88 41.23 63.69 57.80 69.23 17 ER5a ExonRegion 0 20.36 19.06 41.57 60.13 8.71 87.09 29.67 49.46 57.91 30.67 54.12 18.55 19.86 31.34 45.45 48.95 30.71 72.61 57.74 38.01 69.57 66.16 71.86 18 E5a_E6a KnownJunction 0 45.56 53.48 33.20 61.90 27.84 139.92 41.07 47.77 43.92 27.67 57.07 36.76 34.09 45.09 47.10 98.26 32.73 96.92 102.21 45.13 94.15 127.37 121.39 19 E6_Aa NovelBoundary 0 0.00 0.00 0.00 1.90 0.00 2.73 4.42 0.00 0.00 2.71 2.53 0.00 0.00 0.00 0.00 4.36 0.00 0.00 23.81 9.01 0.00 0.00 0.00 20 ER6a ExonRegion 0 7.29 13.20 24.38 21.74 7.37 55.11 16.82 22.63 35.16 14.11 25.44 18.27 21.24 26.29 31.77 30.77 25.54 41.57 33.92 27.74 57.75 30.06 41.89 21 E6a_E7a KnownJunction 0 9.56 28.61 28.03 35.26 22.58 98.75 34.36 26.90 46.90 24.61 23.64 18.31 6.01 26.43 42.90 38.71 35.81 70.60 47.06 32.66 74.57 37.35 57.11 22 E7_Aa NovelBoundary 0 0.00 0.00 5.06 1.90 3.90 2.21 0.00 1.93 3.07 1.40 1.95 0.00 0.00 2.47 0.00 0.00 12.90 2.16 0.00 3.00 0.00 0.00 8.28 23 ER7a ExonRegion 0 15.24 16.47 35.32 29.55 16.75 54.87 25.71 16.90 45.77 25.44 32.78 11.26 11.91 25.14 41.20 29.13 32.81 70.69 46.63 26.38 69.33 43.63 45.22 24 E7_Ab KnownBoundary 0 24.00 22.30 45.77 30.43 17.23 44.29 16.30 22.67 48.47 24.39 34.54 5.85 31.33 38.91 42.52 16.06 34.60 82.37 53.08 22.82 57.02 36.07 31.33 25 ER7b ExonRegion 0 12.71 22.36 42.22 40.81 12.78 92.11 21.11 37.11 65.69 27.02 35.99 8.69 20.91 33.66 34.96 40.39 41.97 78.53 40.39 42.76 73.46 47.60 48.35 26 E7a_E8a KnownJunction 0 25.41 31.05 46.45 48.21 15.70 95.17 25.13 33.02 59.26 31.40 30.64 6.30 33.11 17.07 26.21 37.00 30.76 64.05 39.44 47.04 38.36 51.07 46.52 27 E7b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.33 3.33 28 ER7c ExonRegion 0 1.59 0.00 1.23 0.00 0.00 1.83 0.66 0.00 3.71 0.57 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 2.20 2.08 3.67 29 ER8a ExonRegion 0 13.31 13.61 44.05 53.15 12.04 69.57 19.39 41.78 60.72 25.41 23.46 14.51 9.03 27.30 45.15 21.34 22.19 42.50 35.99 35.97 52.75 41.91 33.05 30 E8a_E9a KnownJunction 1 10.30 12.17 50.71 75.48 4.16 42.31 33.78 51.88 65.83 35.48 31.85 0.00 0.00 17.36 70.21 19.82 21.97 36.98 12.05 33.36 42.69 50.82 26.80 31 ER9a ExonRegion 0 8.03 8.34 41.17 49.70 8.53 77.45 23.39 37.95 51.45 22.81 28.79 7.12 7.63 30.80 29.99 28.42 15.70 56.99 21.85 32.51 58.02 46.48 50.83 32 E9a_E10a KnownJunction 0 9.48 5.79 34.39 47.35 19.02 98.52 20.27 26.94 61.80 14.21 25.22 18.01 21.75 19.66 27.20 31.87 3.55 71.01 37.65 18.28 24.65 31.66 59.75 33 ER10a ExonRegion 0 14.38 8.29 40.90 34.09 10.04 67.55 24.09 25.55 39.09 20.30 23.85 8.96 9.22 24.74 24.61 27.72 16.82 48.85 26.73 22.54 49.20 33.36 39.01 34 E10a_E11a KnownJunction 0 17.19 28.81 61.47 46.85 7.30 70.87 59.93 39.14 33.74 31.29 21.01 12.60 12.99 20.37 26.70 62.72 23.56 58.24 8.94 30.68 51.58 49.29 46.69 35 I10 Intron 0 0.99 2.84 7.08 8.72 6.09 19.73 20.06 15.99 13.80 13.70 0.20 0.18 0.00 0.35 0.21 0.00 0.34 14.82 5.11 7.04 1.03 3.23 1.22 36 I10_SR1 SilentIntronRegion 0 0.99 2.85 7.10 8.74 6.10 19.77 20.11 16.02 13.83 13.73 0.20 0.18 0.00 0.35 0.21 0.00 0.34 14.85 5.12 7.06 1.03 3.24 1.22 37 E11_Aa NovelBoundary 0 0.00 9.14 8.57 9.82 4.33 29.02 33.74 18.94 22.71 24.07 0.00 0.00 0.00 2.47 0.00 0.00 0.00 18.24 0.00 6.01 0.00 2.45 0.00 38 ER11a ExonRegion 0 12.44 9.86 37.78 40.11 12.86 71.78 28.75 28.57 33.06 23.40 14.68 5.53 4.69 16.05 19.95 19.22 10.04 39.22 22.90 24.93 29.34 27.87 30.75 39 IG35 Intergenic 0 5.32 7.23 6.18 8.98 13.92 32.45 25.38 16.76 19.80 11.56 2.35 2.05 4.36 2.82 1.73 3.87 0.29 15.22 12.16 15.87 10.89 6.69 15.54 40 IG35_SR1 SilentIntergenicRegion 0 1.58 4.36 2.79 4.32 7.85 21.06 21.55 10.93 7.68 6.88 0.00 0.98 0.00 1.49 0.56 2.46 0.91 8.16 5.96 10.12 9.09 4.39 7.14 41 IG35_AR1 ActiveIntergenicRegion 0 7.13 8.65 7.83 11.26 16.92 38.13 27.44 19.67 25.67 13.88 3.47 2.58 6.43 3.47 2.30 4.57 0.00 18.69 15.19 18.74 11.87 7.84 19.63