Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTSC Gene 0 109.04 5.17 24.58 24.58 72.85 38.41 22.32 33.97 36.05 27.69 484.63 501.67 487.89 717.16 1077.81 259.22 293.24 27.63 23.34 7.55 266.17 175.77 63.90 2 415415 Transcript 1 213.80 0.00 44.17 54.06 318.58 61.25 29.32 84.45 38.97 66.46 2388.78 2096.65 2150.60 2131.22 8164.14 1171.87 687.15 25.70 34.63 4.36 885.68 884.85 197.35 3 393302 Transcript 1 3.78 0.00 0.00 6.29 28.78 0.00 3.89 0.00 5.70 1.58 118.77 135.79 147.56 77.87 435.26 72.89 30.48 4.19 0.00 0.00 58.44 11.27 7.51 4 227266 Transcript 0 378.52 8.95 111.36 126.15 317.31 196.27 77.26 180.14 207.87 136.56 1889.19 1761.25 1979.13 3129.36 3174.30 988.21 1538.60 130.90 104.74 12.22 1106.96 620.16 226.06 5 320621 Transcript 1 5.29 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.08 0.00 10.63 33.01 18.76 18.88 7.25 7.06 2.06 0.00 0.00 0.00 1.10 0.52 4.40 6 393301 Transcript 0 0.00 0.76 1.53 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.81 0.36 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 7 IG41_AR6 ActiveIntergenicRegion 0 9.35 0.19 0.57 2.22 1.72 1.18 0.61 2.08 1.44 0.63 4.98 8.25 20.90 4.90 16.16 3.73 5.67 0.51 1.17 0.39 4.66 6.84 0.27 8 IG41_AR5 ActiveIntergenicRegion 0 14.58 1.76 1.31 1.67 9.64 2.32 1.72 1.20 1.70 0.49 2.38 15.15 24.48 9.30 24.76 19.27 12.62 0.00 0.00 0.00 8.03 3.60 3.88 9 IG41_AR3 ActiveIntergenicRegion 0 4.01 0.79 0.66 0.73 2.27 0.00 0.24 0.00 1.00 0.31 0.35 7.64 20.62 2.71 3.17 2.26 3.10 0.00 0.29 0.38 0.39 0.00 0.16 10 IG41_SR2 SilentIntergenicRegion 0 2.69 0.03 0.15 0.58 1.12 0.08 0.51 0.31 0.26 0.18 1.95 9.28 17.95 9.98 8.33 4.48 4.18 0.13 0.63 0.17 0.70 0.44 0.91 11 ER1a ExonRegion 0 40.96 1.91 8.73 2.44 5.52 14.48 9.05 0.68 1.72 2.80 34.47 2.80 1.86 100.02 156.43 48.48 25.17 18.98 29.33 9.00 133.55 60.77 69.32 12 E1_Ab KnownBoundary 0 79.13 5.20 27.70 5.09 20.97 37.65 22.30 1.73 6.60 3.28 115.34 24.91 0.00 412.27 225.97 74.94 152.50 47.71 37.37 12.08 334.03 167.11 163.64 13 ER1b ExonRegion 1 235.47 3.16 38.65 24.88 90.23 123.81 40.78 43.45 34.03 50.73 1516.57 258.61 312.84 3115.68 4471.93 963.27 969.64 77.70 39.12 7.91 1141.63 439.31 207.88 14 E1a_E2a KnownJunction 1 114.24 19.40 83.41 89.63 58.91 18.80 19.65 127.78 94.79 101.40 1711.85 584.14 558.08 5118.63 10531.09 2401.85 879.38 167.22 66.45 17.90 873.72 1014.21 391.99 15 ER2a ExonRegion 0 390.00 11.25 115.43 80.30 325.36 217.71 91.53 150.77 132.04 128.22 3243.75 1593.36 1593.71 3947.56 7880.24 1727.80 1452.94 122.13 81.71 16.04 1403.23 920.49 304.08 16 E2_Da NovelBoundary 1 6.96 0.00 8.52 0.00 0.00 0.00 0.00 1.89 5.03 1.50 111.40 99.33 288.94 103.07 62.43 55.37 100.33 4.15 0.00 0.00 16.80 16.96 0.00 17 E2a_E3a KnownJunction 1 311.31 0.00 56.41 37.49 78.10 24.42 24.91 86.30 33.01 55.85 2634.19 1377.45 1197.00 1998.54 6692.52 930.18 646.10 20.44 14.40 5.05 774.50 623.36 169.70 18 E2a_E5a NovelJunction 0 12.67 0.00 3.08 1.47 10.44 0.00 4.15 11.58 6.37 2.93 69.81 64.82 53.89 119.84 229.80 49.05 52.55 0.00 0.00 0.00 6.30 0.00 0.00 19 E2a_E6a KnownJunction 1 317.09 21.11 80.96 84.80 276.74 299.60 125.78 116.36 148.06 120.21 1727.70 873.13 1037.76 2713.42 2245.14 476.88 1392.71 60.40 67.20 8.37 985.53 471.25 136.75 20 I2 Intron 0 13.26 0.22 3.67 2.19 6.79 1.81 2.62 4.47 5.20 2.63 88.96 316.90 389.21 140.12 124.06 80.17 55.45 2.40 1.71 0.91 15.97 33.65 16.13 21 I2_AR1 ActiveIntronRegion 0 4.45 0.00 1.71 1.27 3.35 1.26 1.55 3.57 6.52 3.38 67.21 261.83 345.87 146.25 70.29 82.02 40.84 1.44 2.04 1.00 8.21 27.39 10.08 22 I2_SR1 SilentIntronRegion 0 8.37 0.11 1.38 2.11 2.94 3.11 0.60 2.77 4.57 2.49 104.93 421.56 460.85 163.19 83.90 92.05 61.16 2.79 2.19 0.57 12.25 33.42 11.52 23 I2_AR2 ActiveIntronRegion 0 9.07 1.64 2.68 3.34 4.58 1.40 2.89 1.24 6.99 2.74 117.54 314.09 282.76 146.26 95.70 77.85 79.71 2.02 0.00 1.11 24.14 30.27 14.85 24 I2_AR3 ActiveIntronRegion 1 8.77 0.70 3.31 1.83 3.41 0.63 1.91 2.76 5.31 2.47 73.54 407.41 383.50 140.46 115.44 73.56 50.79 1.61 0.74 0.30 10.46 29.88 11.32 25 I2_AR4 ActiveIntronRegion 0 6.35 0.00 3.13 2.73 2.68 0.00 6.62 4.99 6.18 4.08 154.20 572.45 361.13 185.33 156.02 140.02 116.26 3.70 0.00 2.13 16.16 48.15 5.87 26 I2_SR2 SilentIntronRegion 0 7.75 0.00 2.80 0.35 2.46 0.41 6.43 7.62 6.15 2.36 133.88 526.52 357.78 163.85 184.20 113.27 93.27 4.22 4.94 0.63 17.61 47.94 23.19 27 I2_AR5 ActiveIntronRegion 0 8.11 0.00 2.52 1.36 0.00 1.83 1.84 8.64 9.13 1.15 134.55 380.99 335.08 135.43 187.61 140.19 86.74 0.51 5.31 0.00 17.14 41.79 29.37 28 I2_AR6 ActiveIntronRegion 0 13.39 0.00 7.81 2.37 5.48 0.81 4.88 7.85 6.24 0.19 116.01 358.45 315.96 149.77 173.80 91.63 61.60 1.68 3.48 0.85 10.33 44.43 19.61 29 I2_SR3 SilentIntronRegion 0 22.23 0.00 8.90 3.04 11.12 1.86 3.35 6.79 7.01 2.61 105.70 388.33 550.23 167.46 214.33 102.45 64.59 2.71 2.77 2.16 23.43 44.33 24.11 30 I2_SR4 SilentIntronRegion 0 14.52 0.19 1.10 2.02 10.02 1.76 3.64 4.60 3.24 3.24 62.24 135.44 266.95 98.05 86.24 51.75 39.33 2.55 0.29 0.30 17.09 24.94 15.46 31 I2_AR9 ActiveIntronRegion 0 4.23 0.00 0.00 1.36 8.03 3.67 1.32 1.73 0.00 4.59 38.66 115.66 184.92 74.71 55.12 19.11 40.55 0.00 0.00 0.00 6.61 33.93 20.56 32 I2_AR10 ActiveIntronRegion 0 17.54 0.71 1.90 0.70 4.64 1.27 0.86 1.78 3.81 2.31 55.83 176.27 178.41 82.38 93.41 41.69 54.16 2.24 1.11 0.74 13.57 28.43 13.07 33 E3_Aa NovelBoundary 1 23.12 0.00 11.89 3.23 10.87 0.00 4.15 6.98 1.79 4.43 106.45 251.78 298.84 121.96 123.49 51.87 43.01 0.00 0.00 3.07 17.61 33.68 17.24 34 ER3a ExonRegion 1 294.89 2.37 43.39 51.00 221.17 39.61 20.89 80.69 40.93 59.18 2938.89 2262.73 1716.61 2682.17 8198.91 1271.41 792.72 30.11 34.78 5.38 961.31 819.24 219.35 35 E3a_E5a KnownJunction 1 272.34 0.00 37.23 55.30 369.69 75.18 23.10 81.94 41.58 68.23 2570.02 2188.46 1897.60 2284.72 9161.41 1326.15 702.01 26.12 33.51 3.00 893.79 1015.37 225.87 36 E3a_E5b KnownJunction 1 3.78 0.00 0.00 6.29 28.78 0.00 3.89 0.00 5.70 1.58 118.77 135.79 147.56 77.87 435.26 72.89 30.48 4.19 0.00 0.00 58.44 11.27 7.51 37 E3a_E6a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 18.90 18.91 13.47 12.01 13.35 4.02 0.00 0.00 0.00 0.00 3.15 0.00 0.00 38 ER3b ExonRegion 0 5.29 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.08 0.00 10.63 33.01 18.76 18.88 7.25 7.06 2.06 0.00 0.00 0.00 1.10 0.52 4.40 39 I3 Intron 0 10.18 0.49 3.95 2.93 15.46 1.32 2.23 3.10 0.44 2.47 77.65 197.85 227.91 85.27 87.45 50.76 49.23 1.77 2.30 0.51 9.53 22.56 13.42 40 I3_AR1 ActiveIntronRegion 0 10.28 0.49 3.99 2.96 15.61 1.34 2.25 3.13 0.45 2.48 78.38 199.73 230.03 86.07 88.28 51.25 49.70 1.79 2.32 0.52 9.62 22.76 13.54 41 ER4a ExonRegion 0 0.00 0.76 1.53 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.81 0.36 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 42 I4 Intron 0 25.60 0.53 2.39 3.27 11.82 3.43 3.77 3.18 3.65 3.07 58.77 157.75 250.94 89.74 110.63 46.52 35.10 2.76 0.83 1.75 15.67 29.33 11.66 43 I4_AR1 ActiveIntronRegion 0 15.83 0.69 1.52 1.36 5.90 4.42 2.83 2.29 4.01 1.86 55.77 143.45 195.82 87.62 96.12 57.27 33.02 3.13 0.62 2.55 17.95 34.70 18.18 44 I4_SR1 SilentIntronRegion 1 18.23 2.03 1.23 3.98 25.11 9.87 6.21 3.06 6.84 0.00 31.67 206.15 382.42 111.56 134.13 34.29 24.38 0.14 5.64 4.26 2.20 25.64 19.65 45 I4_AR2 ActiveIntronRegion 0 30.19 0.47 2.73 4.25 15.08 3.34 4.28 4.11 4.00 3.27 64.82 183.09 314.01 99.41 120.44 45.40 41.12 3.20 1.16 1.72 16.38 30.07 10.23 46 I4_SR2 SilentIntronRegion 0 28.47 1.23 6.62 5.06 3.95 3.73 4.93 5.70 4.63 9.28 56.58 81.90 158.68 66.55 118.43 37.43 32.42 2.27 0.00 0.38 19.18 23.17 5.73 47 I4_AR3 ActiveIntronRegion 0 27.11 0.00 0.95 2.44 14.08 1.09 2.94 0.04 0.75 2.08 43.71 118.03 144.87 64.53 96.86 33.65 16.93 0.55 0.00 0.63 7.19 18.17 5.84 48 E5_Aa NovelBoundary 1 62.68 0.00 5.06 0.00 39.30 12.49 6.58 0.00 4.40 0.00 46.33 166.55 206.80 97.59 180.60 103.73 29.45 7.50 0.00 0.00 26.38 18.06 19.04 49 ER5a ExonRegion 1 155.26 0.00 51.11 52.82 267.46 47.31 35.54 86.96 36.37 64.69 2207.54 2004.83 2403.59 1977.71 7166.87 1017.59 672.28 25.29 35.75 5.72 877.57 754.33 168.82 50 E5_Ab KnownBoundary 1 116.47 0.00 74.10 56.74 287.27 43.33 50.83 98.74 32.06 68.34 1818.46 1903.37 2309.26 1637.71 6397.20 748.18 658.91 23.21 25.79 2.81 953.16 554.41 138.12 51 ER5b ExonRegion 1 27.15 5.02 9.95 7.17 21.89 6.05 12.05 7.57 7.93 8.39 151.47 316.37 258.16 192.24 406.92 83.58 66.17 8.23 10.58 7.40 82.13 85.83 27.73 52 ER6a ExonRegion 0 259.15 5.43 90.44 111.34 207.63 116.34 55.36 159.74 179.95 132.69 1784.38 1445.29 1677.94 2889.83 2659.16 807.07 1339.20 96.97 93.71 10.49 923.54 599.93 190.04 53 E6a_E7a KnownJunction 0 298.65 14.60 121.28 137.45 319.61 232.08 78.26 208.94 218.75 170.20 2291.95 1479.03 1891.92 3785.88 3024.17 934.11 1857.97 86.14 86.12 7.99 1082.34 720.60 157.84 54 ER7a ExonRegion 0 353.39 12.50 119.79 160.65 452.25 219.27 86.18 226.19 253.97 167.12 2328.30 2167.12 2649.45 3506.54 3340.68 1234.77 1835.70 171.41 129.15 13.93 1091.29 759.15 283.72 55 E7a_E8a KnownJunction 0 545.87 8.62 152.33 179.63 327.16 146.00 72.78 244.72 302.40 188.87 2440.62 2447.45 2852.74 4871.88 5573.29 2171.91 2187.56 247.35 221.56 22.05 1517.81 1205.75 454.56 56 I7_AR1 ActiveIntronRegion 0 64.89 0.31 5.82 2.16 8.53 1.67 3.01 3.91 3.07 1.30 7.33 14.26 35.20 9.12 53.83 14.89 12.53 3.77 5.32 0.97 3.01 2.21 0.45 57 ER8a ExonRegion 0 373.66 7.61 121.84 141.58 364.57 195.17 80.93 219.68 256.90 148.03 2787.34 2510.87 2850.69 3851.81 3447.94 1155.23 2153.07 158.83 106.65 16.47 1597.48 697.75 261.34 58 E8a_E9a KnownJunction 1 225.89 3.03 126.49 128.26 279.20 199.03 65.98 181.75 187.50 117.90 1444.73 2677.47 2781.96 2554.08 3544.48 808.33 1237.21 136.05 102.97 12.02 1023.65 527.65 220.66 59 E8a_E10a NovelJunction 0 0.00 0.00 0.00 0.00 7.72 5.79 0.00 2.55 0.00 0.00 4.79 0.00 0.00 12.24 8.90 0.00 13.65 1.82 0.00 0.00 3.15 2.88 8.02 60 I8_SR1 SilentIntronRegion 0 7.97 0.17 0.78 1.07 7.69 3.50 5.84 1.22 3.08 2.04 54.64 83.10 105.80 83.72 19.53 23.09 41.62 3.93 1.61 1.82 4.52 8.72 2.26 61 I8_AR2 ActiveIntronRegion 0 43.98 1.04 2.00 2.07 17.66 5.05 6.36 4.18 4.08 2.61 41.61 77.43 89.00 84.83 56.49 29.97 42.81 4.28 3.42 0.84 5.37 8.98 1.50 62 E9_Aa NovelBoundary 0 80.24 0.00 5.62 6.36 11.29 0.00 6.09 12.32 11.05 1.05 40.33 92.43 78.89 72.11 108.78 31.02 45.54 6.18 4.33 0.00 19.09 8.27 3.84 63 ER9a ExonRegion 0 531.34 9.34 138.19 151.67 499.49 293.41 100.89 198.94 266.69 152.78 2175.43 2054.33 2313.93 3645.75 3794.88 1263.85 1840.12 188.65 144.09 16.39 1526.00 696.50 294.91 64 E9a_E10a KnownJunction 0 522.09 3.09 125.04 118.40 312.90 175.41 72.07 178.34 194.07 123.08 1456.84 1579.26 1302.84 2549.49 3124.55 747.07 1173.16 120.63 68.33 11.19 1023.53 379.89 187.46 65 I9 Intron 0 28.07 0.48 1.29 1.27 7.14 3.17 3.43 1.01 1.01 1.34 18.50 18.44 18.81 26.43 25.67 8.40 15.80 2.46 2.50 0.17 3.62 4.90 0.92 66 I9_SR1 SilentIntronRegion 0 28.20 0.48 1.30 1.28 7.17 3.18 3.44 1.02 1.02 1.35 18.59 18.53 18.90 26.55 25.79 8.43 15.87 2.47 2.51 0.17 3.64 4.93 0.93 67 E10_Aa NovelBoundary 0 80.61 3.35 1.48 5.89 17.06 0.00 0.00 0.00 3.10 5.99 49.85 33.91 26.46 26.08 28.06 15.21 37.49 18.78 0.00 3.26 9.14 4.84 0.00 68 ER10a ExonRegion 0 358.10 4.18 37.24 47.67 133.50 86.41 34.36 66.75 70.43 44.68 454.60 378.52 432.06 924.93 988.73 282.88 369.35 42.57 27.60 3.29 298.39 143.11 73.29