Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM168A Gene 0 18.66 42.40 29.71 42.05 25.04 92.74 75.05 40.15 64.03 65.43 106.65 37.59 59.58 95.88 30.45 74.14 83.93 213.26 71.04 135.44 145.07 74.31 96.06 2 64778 Transcript 0 0.08 28.08 15.91 44.71 2.51 57.32 44.81 47.11 57.48 48.55 27.34 3.17 27.41 19.63 4.04 9.13 7.00 98.24 41.79 120.33 24.29 8.20 6.97 3 450446 Transcript 0 0.00 0.00 0.00 1.37 0.00 2.90 1.72 2.22 4.86 1.24 4.42 0.00 0.00 2.47 0.00 0.00 0.00 7.38 14.40 6.52 8.83 0.00 4.18 4 356467 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 6.20 15.89 3.84 4.69 3.49 36.68 19.81 7.11 6.87 11.99 25.66 3.10 8.52 20.10 7.67 16.85 19.83 70.65 21.47 41.44 32.26 13.89 21.61 6 E1a_E2a KnownJunction 1 10.45 20.79 22.38 16.45 7.89 36.23 22.04 16.88 28.82 38.12 102.82 0.00 59.57 56.68 22.50 24.18 94.16 103.38 40.38 122.47 148.57 25.23 83.14 7 I1 Intron 0 6.82 10.55 5.57 10.42 6.73 4.01 27.75 5.40 4.22 5.03 1.96 7.53 6.91 1.15 3.17 7.41 6.80 7.64 4.48 14.35 1.75 0.65 5.05 8 I1_SR1 SilentIntronRegion 0 7.00 5.26 5.54 9.44 5.95 6.37 26.64 4.97 3.93 3.96 0.87 0.39 5.77 0.70 3.96 10.23 6.74 11.14 8.74 15.94 2.15 0.31 8.81 9 I1_AR1 ActiveIntronRegion 0 10.83 9.70 8.27 14.75 14.91 9.66 55.70 10.72 8.99 8.06 1.92 9.48 12.01 1.01 4.66 8.51 9.18 6.60 8.10 20.68 1.23 0.35 9.19 10 I1_SR2 SilentIntronRegion 0 4.42 7.28 3.38 12.57 8.14 1.09 25.92 5.10 4.27 4.58 2.00 6.46 13.63 0.81 3.04 1.52 5.92 2.53 3.49 17.35 0.76 0.76 3.68 11 I1_AR2 ActiveIntronRegion 0 5.75 16.23 8.25 8.37 12.34 5.59 37.68 5.96 3.98 9.90 1.64 7.78 5.39 1.13 2.90 4.57 9.78 9.19 7.12 14.44 0.00 0.27 4.56 12 I1_SR3 SilentIntronRegion 0 6.73 11.01 4.24 10.42 5.54 4.03 27.80 5.39 4.03 5.17 1.59 8.55 8.06 1.73 5.02 8.28 7.09 6.91 4.52 16.14 1.41 0.42 4.56 13 I1_AR4 ActiveIntronRegion 0 8.27 17.86 14.44 22.33 12.67 6.59 49.55 7.31 4.69 5.39 1.46 9.53 11.28 1.12 2.43 16.41 8.71 17.51 5.55 20.36 0.92 0.44 11.04 14 I1_AR5 ActiveIntronRegion 0 6.96 17.52 13.76 28.97 7.08 1.83 36.13 7.75 8.25 9.73 0.00 12.71 10.29 2.93 0.00 20.04 23.43 15.20 7.71 26.56 0.85 0.00 7.48 15 I1_AR6 ActiveIntronRegion 0 8.31 6.93 12.66 24.58 15.56 0.61 20.94 12.61 5.31 10.32 2.65 4.65 2.95 2.47 2.90 19.04 5.75 12.66 6.84 18.28 7.02 0.00 9.24 16 I1_SR4 SilentIntronRegion 0 8.22 13.93 7.72 13.73 8.51 5.00 34.91 7.17 5.52 6.62 2.16 7.90 8.07 1.11 3.52 9.19 8.43 10.05 5.35 18.10 2.05 0.80 6.11 17 I1_AR7 ActiveIntronRegion 0 5.06 2.30 3.45 9.72 5.05 4.16 24.83 7.78 5.33 3.44 1.22 7.22 9.35 0.97 1.55 4.49 4.57 1.74 0.80 15.00 1.94 0.79 4.81 18 I1_SR5 SilentIntronRegion 0 8.94 5.50 3.59 6.59 5.52 3.69 20.36 3.67 2.44 3.44 1.14 3.65 3.69 1.04 2.80 5.99 3.08 6.10 4.23 6.48 1.95 0.31 3.75 19 I1_AR9 ActiveIntronRegion 0 11.39 20.33 7.25 15.88 9.26 3.52 38.34 6.60 6.84 8.76 2.23 13.48 11.42 0.99 3.74 4.95 6.77 2.95 1.63 18.27 0.85 0.53 3.39 20 I1_AR10 ActiveIntronRegion 0 7.34 10.77 4.93 11.29 9.69 3.54 28.08 4.85 5.52 7.28 2.07 11.95 4.53 0.76 1.64 4.93 3.84 4.13 2.61 10.70 0.56 0.39 2.60 21 ER2a ExonRegion 0 6.52 23.46 22.18 34.51 14.59 55.14 53.76 27.99 44.56 50.97 78.41 30.85 53.30 85.23 31.32 48.94 59.15 185.17 50.57 141.42 130.62 53.22 94.27 22 E2a_E3a KnownJunction 0 3.26 22.89 28.36 47.95 7.47 38.05 36.39 40.13 50.26 76.15 102.82 24.31 46.91 63.10 39.56 42.55 71.34 227.70 24.19 206.32 142.95 75.07 89.55 23 I2_AR1 ActiveIntronRegion 0 8.56 19.21 7.06 8.44 4.02 1.83 17.26 2.04 3.15 7.54 0.69 7.14 6.93 0.00 2.61 7.43 2.98 12.05 3.04 9.06 3.40 0.42 2.43 24 I2_AR2 ActiveIntronRegion 0 11.72 26.28 20.83 22.02 13.79 0.00 28.31 6.51 7.22 8.29 3.87 16.98 1.44 0.00 2.90 4.12 6.60 27.72 2.21 9.66 4.41 0.00 5.87 25 I2_AR3 ActiveIntronRegion 0 10.76 21.52 19.61 22.03 18.51 0.00 37.40 9.94 7.41 10.80 3.87 12.99 7.43 0.00 2.90 5.94 12.65 23.10 6.37 10.82 5.33 0.00 2.69 26 I2_AR4 ActiveIntronRegion 0 7.56 23.24 22.23 22.58 17.20 0.79 37.83 8.89 6.88 11.63 1.38 6.18 9.38 0.00 2.90 8.92 11.79 27.45 6.37 12.77 4.41 0.00 0.00 27 ER3a ExonRegion 0 7.66 38.54 32.78 49.65 13.08 74.28 54.28 42.21 77.57 84.13 133.49 62.80 108.16 86.58 39.47 65.09 84.56 256.43 78.85 183.37 186.23 92.16 123.85 28 E3_Da NovelBoundary 0 3.19 15.39 7.21 16.55 0.00 2.16 22.79 6.20 3.41 2.34 4.53 0.00 0.00 2.47 0.00 0.00 21.60 30.51 4.61 17.83 19.09 6.25 3.84 29 E3a_E4a KnownJunction 0 0.00 37.62 10.53 36.43 0.00 71.15 57.19 35.57 65.86 44.56 19.11 0.00 20.45 23.60 4.45 11.36 4.02 107.41 40.47 87.69 12.66 14.94 8.28 30 E3a_E5a KnownJunction 0 0.00 12.37 32.38 16.15 7.39 13.63 18.77 21.89 43.03 60.90 126.30 32.41 54.22 134.03 59.46 47.00 83.22 162.70 71.72 101.12 167.05 132.45 117.80 31 E3a_E6a NovelJunction 0 0.00 0.00 2.66 0.00 0.00 0.00 2.08 0.00 0.00 1.26 2.00 0.00 6.82 0.00 0.00 4.36 4.77 8.50 3.48 0.00 9.08 0.00 3.33 32 I3 Intron 0 5.52 10.92 5.10 8.35 5.83 5.35 26.86 5.02 5.06 5.27 8.07 11.76 13.45 5.49 2.68 7.48 11.91 23.05 9.68 20.54 9.98 5.31 7.43 33 I3_AR1 ActiveIntronRegion 0 4.14 7.53 5.17 6.90 5.61 7.14 18.92 7.58 7.03 4.94 8.41 6.32 11.02 5.18 3.57 6.58 6.72 32.96 8.57 18.72 17.07 5.03 7.37 34 I3_SR1 SilentIntronRegion 0 5.12 12.03 5.90 9.03 5.41 4.87 27.16 4.94 4.04 5.72 7.44 13.09 13.22 5.14 2.54 7.33 11.73 19.26 9.31 20.23 7.92 5.21 7.53 35 I3_AR2 ActiveIntronRegion 0 9.44 15.17 3.91 7.81 8.62 6.69 40.12 5.46 5.55 6.70 7.78 13.61 24.25 6.63 2.67 8.22 13.95 22.47 11.54 18.75 11.87 7.00 6.46 36 I3_AR3 ActiveIntronRegion 0 2.47 5.76 2.45 10.90 12.93 15.28 24.71 1.73 8.23 5.73 7.73 31.75 14.07 3.25 7.74 14.37 14.30 14.47 15.93 16.67 8.81 9.38 0.00 37 I3_SR2 SilentIntronRegion 0 4.57 6.06 3.50 7.61 4.98 4.29 20.64 3.01 6.47 2.80 10.16 9.72 6.73 5.97 2.46 7.95 14.63 28.88 10.11 24.77 9.80 4.40 8.18 38 E4a_E5a KnownJunction 0 0.00 18.81 20.70 49.31 4.16 42.82 31.80 51.79 45.28 45.13 35.48 6.30 33.11 12.66 4.45 4.36 8.04 71.26 43.01 143.37 34.90 0.00 4.35 39 ER4a ExonRegion 0 0.24 27.79 16.52 48.41 3.37 58.00 45.46 53.97 61.30 55.94 27.42 3.21 28.66 22.62 3.22 11.67 8.92 116.07 41.88 129.94 25.30 9.65 8.27 40 I4 Intron 0 18.79 18.93 7.25 12.41 14.46 13.91 38.13 9.48 12.62 11.44 13.88 18.31 17.87 11.83 4.09 13.42 14.74 32.86 12.97 38.08 12.37 6.80 7.55 41 I4_SR1 SilentIntronRegion 0 3.58 10.12 2.74 8.33 5.50 7.90 29.81 4.69 7.56 5.48 9.99 11.88 10.41 7.16 2.03 9.33 9.16 24.64 8.88 32.92 10.42 4.78 6.51 42 I4_AR1 ActiveIntronRegion 0 32.44 28.49 9.13 12.23 20.49 15.58 47.42 11.31 16.26 17.14 17.19 34.18 23.77 13.65 4.86 18.05 19.89 42.32 17.39 43.38 15.12 8.64 6.75 43 I4_SR2 SilentIntronRegion 0 35.13 23.75 11.14 16.98 22.91 16.83 39.95 13.12 17.52 14.02 15.37 19.35 29.54 16.45 4.37 12.71 18.64 27.23 13.58 42.78 12.86 8.23 7.65 44 I4_AR2 ActiveIntronRegion 0 20.10 24.18 11.55 15.90 19.51 19.93 46.39 14.72 15.46 17.47 17.11 14.99 14.35 15.69 6.92 19.33 19.25 47.74 18.29 37.72 12.91 7.72 11.15 45 I4_SR3 SilentIntronRegion 0 18.36 19.89 8.13 17.07 14.58 27.76 40.67 11.41 11.24 10.83 18.01 17.09 16.73 12.45 8.92 16.16 11.47 47.65 12.35 41.87 14.61 7.73 8.46 46 E5_Aa NovelBoundary 0 15.11 22.76 6.06 17.28 31.58 40.83 17.49 17.05 14.50 11.42 9.21 26.11 6.82 33.79 4.45 41.61 26.27 44.94 19.39 57.01 19.65 2.33 3.76 47 ER5a ExonRegion 0 14.75 52.58 37.90 51.36 10.49 70.56 67.94 75.09 86.13 97.90 173.47 56.01 113.86 103.11 38.80 61.47 121.24 249.48 88.79 208.16 247.06 81.41 96.00 48 E5_Da NovelBoundary 0 20.60 5.00 1.33 26.07 3.65 20.27 34.58 6.08 7.29 6.15 2.37 0.00 7.30 19.13 0.00 7.60 12.16 31.88 0.00 22.95 11.18 5.88 3.76 49 E5a_E6a KnownJunction 0 6.08 36.24 45.98 75.81 25.13 70.98 61.65 76.97 113.86 123.24 110.29 17.41 48.05 86.64 18.54 59.30 80.32 237.11 70.31 202.17 139.74 91.73 105.59 50 E5a_E8a KnownJunction 0 0.00 0.00 0.00 1.37 0.00 2.90 1.72 2.22 4.86 1.24 4.42 0.00 0.00 2.47 0.00 0.00 0.00 7.38 14.40 6.52 8.83 0.00 4.18 51 I5 Intron 0 15.59 11.75 4.76 9.34 10.91 8.48 31.43 5.58 4.97 5.37 10.59 11.83 15.08 13.52 5.20 9.88 12.22 17.38 7.10 18.80 6.51 7.56 8.19 52 I5_SR1 SilentIntronRegion 0 15.59 11.76 4.76 9.35 10.92 8.49 31.44 5.58 4.98 5.37 10.59 11.84 15.09 13.52 5.20 9.88 12.22 17.38 7.10 18.81 6.52 7.56 8.19 53 E6_Aa NovelBoundary 0 28.38 8.42 0.00 14.12 8.66 28.68 22.30 11.99 5.99 19.56 19.27 12.60 6.82 20.19 8.90 19.99 17.11 30.22 14.12 5.43 2.90 7.96 20.91 54 ER6a ExonRegion 1 22.51 49.52 28.95 48.96 23.45 107.95 81.97 65.15 78.97 103.13 134.63 67.24 179.14 129.02 39.60 91.57 99.05 237.35 113.92 211.65 197.81 110.89 139.93 55 E6a_E7a KnownJunction 0 15.63 39.40 28.24 37.29 11.88 43.10 68.14 45.59 71.38 78.49 70.07 69.02 40.42 86.76 51.92 78.27 47.03 310.03 85.27 128.22 109.53 115.00 108.24 56 I6 Intron 0 13.04 2.92 3.98 5.18 8.24 5.26 15.33 3.01 2.15 2.09 4.00 7.51 7.04 9.56 4.62 7.11 8.59 8.25 3.05 7.01 2.22 2.32 3.74 57 I6_SR1 SilentIntronRegion 0 13.07 2.92 3.99 5.19 8.26 5.27 15.36 3.02 2.16 2.09 4.01 7.52 7.05 9.58 4.63 7.12 8.61 8.27 3.05 7.02 2.23 2.33 3.75 58 E7_Aa NovelBoundary 0 16.23 6.25 3.05 14.02 14.35 7.50 26.45 11.83 6.94 3.17 6.74 0.00 6.82 9.54 14.96 12.13 12.62 23.26 0.00 15.02 0.00 6.25 4.35 59 ER7a ExonRegion 0 18.40 42.50 31.43 42.66 17.81 74.43 76.53 41.42 79.17 80.45 89.70 35.23 59.01 96.27 32.66 72.91 86.37 257.26 68.89 166.48 179.21 83.29 91.22 60 E7_Da NovelBoundary 0 16.52 2.76 1.12 5.63 7.89 5.22 3.62 10.68 5.79 0.99 5.05 6.30 6.33 9.71 4.45 3.25 17.58 7.05 0.00 8.76 0.00 0.00 15.88 61 E7a_E8a KnownJunction 0 0.00 39.40 41.69 33.26 39.47 147.53 138.19 37.34 95.51 63.96 78.60 37.66 61.36 101.83 42.65 72.03 70.22 269.94 60.24 191.30 172.48 104.95 136.32 62 E7a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 14.21 0.00 0.00 5.63 0.00 63 I7_SR1 SilentIntronRegion 0 18.82 0.63 7.40 5.07 10.02 2.29 11.78 5.62 2.87 1.60 6.63 7.15 13.27 14.77 5.94 13.91 12.88 5.01 1.99 3.98 2.41 2.60 3.66 64 E8_Aa NovelBoundary 0 10.37 0.00 19.69 7.56 11.46 7.33 21.99 2.05 1.79 4.43 18.48 0.00 6.82 4.77 12.11 18.63 22.25 27.53 3.67 24.35 3.15 4.78 12.29 65 ER8a ExonRegion 0 9.40 47.95 40.95 53.44 38.24 124.49 88.80 51.09 107.25 85.22 119.75 38.70 69.63 137.73 52.11 114.12 105.05 436.34 104.70 174.24 209.00 99.26 153.38 66 E8a_E9a KnownJunction 1 3.63 20.79 66.50 69.92 29.46 99.49 53.57 60.91 136.14 83.81 138.51 24.01 26.30 201.78 95.80 215.16 94.81 533.51 250.74 183.06 188.42 188.91 277.17 67 I8 Intron 0 19.78 5.43 6.09 7.86 13.22 3.18 13.08 7.57 1.97 3.88 7.74 10.20 10.39 13.51 7.56 11.90 9.70 8.35 2.55 5.40 4.41 1.95 2.74 68 I8_AR1 ActiveIntronRegion 0 29.61 6.88 5.36 9.17 16.91 3.72 14.04 9.30 2.08 3.85 8.29 14.83 13.01 16.08 6.66 12.07 12.66 9.12 2.88 6.24 4.97 3.29 2.65 69 E9_Aa NovelBoundary 0 12.74 3.29 8.46 5.89 0.00 8.12 16.47 9.12 4.77 4.32 4.84 0.00 6.82 10.18 9.89 7.01 30.20 18.41 8.19 10.35 5.37 7.90 7.34 70 ER9a ExonRegion 0 27.75 50.61 36.05 49.77 37.78 119.06 96.89 39.51 67.15 64.46 122.97 40.47 40.70 111.97 30.82 92.11 98.17 205.24 74.32 121.91 139.64 83.46 104.97 71 IG16 Intergenic 0 46.09 135.40 71.15 95.21 56.99 149.79 138.04 61.18 65.03 76.54 77.49 28.37 24.01 75.44 32.63 62.97 65.02 187.05 54.42 114.27 104.20 76.25 86.40 72 IG16_AR2 ActiveIntergenicRegion 0 64.63 201.69 105.30 142.00 83.12 223.77 202.35 89.50 96.30 113.36 112.52 40.25 33.40 101.95 44.20 87.58 89.69 277.78 80.06 168.79 155.06 113.86 127.20 73 IG16_SR2 SilentIntergenicRegion 0 9.77 3.43 2.89 2.35 4.81 1.90 11.32 2.75 2.10 3.61 8.40 3.75 5.25 21.08 8.86 15.77 17.62 7.27 3.57 5.86 3.14 1.24 4.57 74 IG16_AR1 ActiveIntergenicRegion 0 9.41 3.02 2.99 1.90 3.00 1.81 9.17 9.57 4.49 3.30 9.57 4.45 6.37 20.01 11.35 13.84 17.31 5.83 3.11 7.69 2.37 0.95 8.04 75 IG16_SR1 SilentIntergenicRegion 0 7.87 2.11 2.74 0.64 5.80 1.92 7.40 3.74 1.83 1.86 4.97 5.85 4.57 25.70 9.17 11.23 12.35 3.59 2.63 3.09 1.80 0.94 3.20