Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GAB2 Gene 0 37.19 104.41 148.41 360.41 92.72 434.74 290.52 142.11 162.33 203.39 3.60 12.14 7.32 12.68 12.46 11.90 5.91 365.89 262.03 116.30 34.27 113.35 61.96 2 304401 Transcript 0 4.38 12.88 17.01 43.33 18.24 97.12 41.78 15.95 33.98 52.44 5.59 4.91 0.00 5.24 2.96 5.19 1.12 92.65 79.90 47.44 13.30 22.93 12.78 3 340149 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 361507 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG36_AR12 ActiveIntergenicRegion 0 9.66 37.59 30.16 48.57 15.90 19.34 22.20 22.41 11.14 24.63 11.34 24.24 21.94 15.56 24.48 6.93 5.26 3.29 5.11 17.99 0.00 18.83 2.34 6 IG36_SR10 SilentIntergenicRegion 0 7.82 24.13 1.95 16.06 9.69 4.36 10.93 4.12 1.54 1.77 0.66 1.86 3.82 2.33 0.77 2.49 0.00 7.49 4.74 4.14 1.67 0.79 0.00 7 IG36_SR9 SilentIntergenicRegion 0 7.07 13.24 5.07 19.48 6.65 7.20 16.72 3.14 4.59 3.18 2.26 1.45 4.45 1.10 2.59 2.17 1.28 3.22 7.89 7.02 0.21 1.81 1.85 8 IG36_AR10 ActiveIntergenicRegion 0 16.88 25.84 11.56 41.48 12.19 11.83 23.73 10.41 12.46 9.05 4.81 2.59 6.04 3.47 5.99 2.32 4.68 8.25 21.52 10.18 0.35 1.34 1.96 9 IG36_SR8 SilentIntergenicRegion 0 18.68 26.01 12.46 38.04 12.86 10.13 21.28 8.73 6.74 7.65 3.96 3.45 7.36 2.57 6.07 5.19 1.94 11.93 19.91 11.93 0.88 1.49 3.43 10 IG36_AR9 ActiveIntergenicRegion 0 7.08 20.91 9.12 38.36 1.25 6.24 13.04 9.31 6.98 7.65 2.88 3.22 8.11 1.19 5.76 6.23 8.60 22.12 20.32 21.68 1.64 2.83 2.79 11 IG36_SR7 SilentIntergenicRegion 0 4.41 16.75 3.98 19.58 7.07 10.91 14.60 6.87 6.08 3.05 2.29 7.00 6.92 3.88 1.91 4.76 4.42 15.20 12.00 14.21 1.20 2.23 2.49 12 IG36_AR7 ActiveIntergenicRegion 0 2.91 7.28 0.00 9.22 3.65 17.06 15.50 0.00 3.78 0.40 0.42 2.64 7.88 2.97 0.00 3.32 2.73 0.54 12.00 8.05 1.25 3.83 0.94 13 IG36_SR4 SilentIntergenicRegion 0 9.80 7.07 4.67 13.30 3.98 13.84 19.72 3.09 3.40 0.50 2.82 5.20 2.04 2.67 5.02 4.25 2.89 14.15 6.30 10.59 0.06 1.40 1.23 14 IG36_AR5 ActiveIntergenicRegion 0 9.38 6.53 3.95 16.86 4.85 12.59 11.67 3.48 2.99 3.12 0.29 3.26 0.70 2.21 3.64 5.02 4.02 5.21 4.95 9.37 0.64 1.80 2.49 15 ER1a ExonRegion 0 1.35 9.57 7.32 21.21 8.81 50.39 26.06 6.68 15.41 24.54 4.33 3.52 0.00 3.42 0.73 2.10 2.24 48.21 42.81 24.96 9.49 14.50 9.08 16 E1a_E3a KnownJunction 0 7.41 16.18 26.70 65.46 27.67 143.84 57.50 25.22 52.55 80.34 6.84 6.30 0.00 7.06 5.19 8.29 0.00 137.09 116.99 69.93 17.11 31.35 16.48 17 I1 Intron 0 10.41 10.74 8.29 27.71 11.19 10.27 68.61 9.32 8.28 8.91 0.08 1.25 0.83 0.22 0.79 1.30 0.65 17.15 15.01 18.10 1.30 1.76 9.29 18 I1_AR1 ActiveIntronRegion 0 51.27 29.82 16.49 36.44 27.62 16.84 110.57 24.53 15.53 18.09 0.00 0.66 1.07 0.25 0.84 0.87 0.61 22.49 29.48 21.38 2.63 2.51 13.96 19 I1_SR2 SilentIntronRegion 0 40.50 28.16 24.85 66.01 34.99 19.56 115.01 24.71 18.92 18.35 0.00 2.80 2.12 0.24 1.49 1.35 1.58 31.95 33.37 19.13 0.65 3.48 13.87 20 I1_AR2 ActiveIntronRegion 0 14.15 24.49 12.95 41.76 26.64 13.51 113.77 16.62 12.40 13.55 0.00 1.23 0.00 0.00 1.41 0.47 0.76 14.56 22.81 18.37 1.01 2.39 11.72 21 I1_SR3 SilentIntronRegion 0 6.31 8.97 7.21 24.97 8.51 9.77 65.64 9.19 8.47 9.14 0.13 1.09 0.78 0.26 0.66 1.60 0.81 14.26 12.76 18.63 1.41 1.87 8.80 22 I1_AR3 ActiveIntronRegion 0 5.19 7.20 6.88 24.00 8.25 12.21 39.00 7.37 7.67 9.86 0.48 0.88 0.00 0.17 1.25 1.84 1.22 23.67 23.09 23.28 2.29 2.55 10.96 23 I1_SR4 SilentIntronRegion 0 6.25 7.53 5.52 25.04 8.46 9.26 66.22 4.71 4.99 5.10 0.04 1.53 0.95 0.21 0.57 1.07 0.27 16.09 11.14 17.83 0.97 1.25 7.75 24 I1_AR1 ActiveIntronRegion 0 7.39 9.24 8.86 26.40 8.46 8.86 80.41 4.84 5.12 8.79 0.00 0.28 0.51 0.11 0.00 1.87 2.60 10.81 12.40 22.14 1.73 1.80 8.32 25 I1_SR2 SilentIntronRegion 0 7.73 6.89 4.56 21.02 6.86 5.57 58.20 4.91 4.25 5.37 0.06 2.56 0.96 0.25 0.67 1.02 0.10 5.45 5.09 14.52 0.82 0.95 5.21 26 I1_AR2 ActiveIntronRegion 0 3.90 8.00 2.99 26.38 8.76 12.95 71.22 6.64 4.98 7.51 0.00 1.70 0.46 0.64 0.98 1.42 0.00 14.80 8.21 20.40 2.63 1.08 8.38 27 I1_AR4 ActiveIntronRegion 0 12.29 21.92 6.70 31.51 22.31 10.03 84.68 5.05 5.60 8.34 0.00 2.36 0.00 0.00 1.36 0.00 0.51 13.32 18.95 12.74 0.66 1.46 2.90 28 I1_SR8 SilentIntronRegion 0 13.39 18.76 14.92 41.75 22.92 8.22 86.01 11.20 7.28 11.71 0.00 1.88 0.00 0.00 0.38 1.18 0.00 15.52 10.49 14.86 1.16 1.65 5.80 29 E2_Aa NovelBoundary 0 10.74 9.14 6.30 40.02 0.00 0.00 55.60 25.14 14.87 14.18 0.00 18.61 0.00 0.00 0.00 0.00 4.02 18.24 13.27 11.31 0.00 0.00 0.00 30 ER2a ExonRegion 0 17.84 6.86 3.08 13.73 6.81 2.36 33.45 4.34 4.73 2.95 0.00 0.29 0.00 0.00 0.00 0.00 0.00 4.28 2.71 9.86 0.00 0.00 7.43 31 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 I2_AR1 ActiveIntronRegion 0 9.04 10.91 4.90 22.55 15.81 16.50 69.45 11.63 13.59 11.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.45 3.76 4.26 0.00 1.52 0.00 33 I2_AR2 ActiveIntronRegion 0 15.82 12.20 4.14 27.58 29.31 19.65 102.45 8.23 11.88 12.62 0.00 0.00 0.00 0.00 0.00 1.27 0.00 16.37 1.82 2.43 0.00 2.08 0.00 34 I2_AR5 ActiveIntronRegion 0 13.79 8.66 5.85 42.72 15.52 2.36 46.00 7.65 12.25 11.53 2.43 0.87 0.00 0.00 0.00 3.23 0.00 11.93 7.28 8.69 0.00 1.96 5.12 35 I2_AR6 ActiveIntronRegion 0 14.71 25.48 5.21 18.90 22.25 4.55 40.91 9.59 5.48 5.51 0.00 0.44 0.00 0.00 0.76 1.11 0.00 8.68 7.51 4.49 0.00 3.10 2.55 36 I2_SR5 SilentIntronRegion 0 12.04 20.84 9.44 30.98 28.16 6.51 41.93 9.95 6.40 7.40 0.00 0.80 0.00 0.32 1.17 0.00 0.03 12.92 14.30 7.35 0.87 2.46 2.77 37 I2_AR7 ActiveIntronRegion 0 27.92 24.34 10.56 30.96 30.79 7.90 41.45 15.48 6.63 12.33 0.00 0.34 0.00 0.00 0.45 0.82 0.59 20.97 17.22 5.93 1.68 4.76 2.42 38 I2_SR6 SilentIntronRegion 0 10.69 13.33 6.72 11.61 11.50 7.75 30.47 7.60 1.30 6.67 0.00 1.10 0.00 0.22 1.02 0.49 0.00 13.72 14.96 4.43 1.58 1.04 1.46 39 I2_AR9 ActiveIntronRegion 0 15.19 24.64 9.74 31.16 19.39 7.50 35.88 14.56 8.07 12.93 0.00 3.34 0.00 0.18 0.94 1.19 0.44 15.27 15.23 6.40 1.68 1.95 1.57 40 ER3a ExonRegion 0 11.68 31.59 89.24 226.83 30.71 203.23 135.66 125.39 201.58 255.85 6.14 18.93 7.93 12.29 9.07 21.06 8.37 543.10 414.07 169.58 32.21 172.07 76.91 41 E3a_E4a KnownJunction 0 31.12 71.30 137.25 362.56 37.86 317.32 185.04 207.26 343.66 406.37 7.05 35.41 14.61 16.48 19.66 54.17 16.18 836.65 946.76 356.08 52.70 375.73 197.36 42 E3a_E5a NovelJunction 0 0.00 0.00 1.12 7.39 0.00 0.00 2.21 0.00 3.65 1.21 0.00 7.65 0.00 2.41 0.00 0.00 0.00 14.26 27.39 3.26 0.00 0.00 0.00 43 ER4a ExonRegion 0 17.59 67.94 119.94 265.87 51.15 302.31 202.98 147.15 220.08 266.82 3.02 17.80 11.94 15.80 12.79 16.21 6.93 626.90 435.92 198.66 39.57 206.90 92.34 44 E4a_E5a KnownJunction 0 27.56 67.29 135.12 336.05 52.72 326.40 318.41 181.38 205.26 285.70 4.58 0.00 6.82 15.36 23.36 8.54 0.00 521.65 293.09 215.78 36.63 156.70 71.79 45 I4_AR5 ActiveIntronRegion 0 4.23 4.19 4.54 16.68 3.78 7.12 25.93 7.22 9.23 4.86 0.00 3.57 0.00 0.00 0.00 0.00 0.00 27.72 1.12 19.02 0.00 2.82 17.45 46 ER5a ExonRegion 0 16.30 54.69 87.64 228.20 41.18 300.68 189.37 132.58 166.09 221.34 2.26 17.48 10.79 13.11 9.94 7.90 5.42 395.03 266.10 136.91 30.79 114.76 50.35 47 E5a_E6a KnownJunction 0 7.56 75.91 85.72 180.36 27.25 386.71 245.72 144.01 129.72 155.29 8.05 5.70 13.80 7.42 9.64 4.36 13.00 287.65 220.52 126.62 24.53 93.81 45.41 48 E6_Aa NovelBoundary 0 13.26 0.00 15.32 18.71 27.76 38.78 12.06 18.65 18.58 7.95 12.63 12.60 0.00 0.00 4.57 0.00 0.00 5.84 8.85 0.00 12.11 0.00 8.19 49 ER6a ExonRegion 0 25.87 59.12 100.78 236.14 48.45 357.05 186.69 146.15 160.06 190.28 5.25 10.30 10.17 15.11 14.99 13.23 5.91 429.16 262.84 146.76 44.72 109.59 62.72 50 E6_Da NovelBoundary 0 26.97 11.84 27.94 18.38 11.54 62.52 25.97 25.10 28.85 7.79 0.00 0.00 0.00 0.00 5.19 4.27 0.00 10.45 17.60 15.53 16.56 17.21 26.72 51 E6a_E7a KnownJunction 0 25.49 71.24 150.67 293.64 35.48 408.40 233.00 203.07 217.33 261.37 0.00 11.70 0.00 28.25 0.00 15.12 4.02 590.09 436.91 156.60 48.12 162.82 91.59 52 I6 Intron 0 11.21 3.92 10.23 12.18 9.49 20.15 14.55 10.94 11.68 4.79 2.12 1.28 1.22 3.53 2.05 4.16 1.59 14.68 9.48 8.48 11.48 6.29 9.13 53 I6_SR1 SilentIntronRegion 0 11.23 3.92 10.25 12.20 9.50 20.18 14.57 10.95 11.70 4.80 2.12 1.28 1.22 3.53 2.05 4.17 1.59 14.70 9.50 8.49 11.50 6.30 9.14 54 E7_Aa NovelBoundary 0 0.00 2.70 16.44 13.95 3.40 10.16 12.37 15.12 10.73 9.11 0.00 0.00 0.00 0.00 4.94 4.36 0.00 18.41 17.79 0.00 12.42 2.69 4.35 55 ER7a ExonRegion 0 19.75 65.89 174.90 369.17 67.39 438.42 256.93 200.75 240.33 296.37 6.46 19.87 8.14 19.63 17.73 17.14 15.07 674.12 478.13 181.49 52.23 156.25 99.49 56 E7a_E8a KnownJunction 0 28.89 81.43 177.11 378.57 117.23 663.71 358.65 205.62 272.05 337.06 5.26 24.01 6.66 28.49 8.90 12.22 0.00 564.01 403.02 230.17 50.47 118.67 78.19 57 I7 Intron 0 1.38 0.94 4.41 4.72 4.97 12.95 11.56 4.31 4.45 2.54 1.26 2.65 0.00 2.28 3.74 3.87 0.92 11.09 6.81 5.93 7.78 4.84 7.91 58 I7_SR1 SilentIntronRegion 0 1.38 0.95 4.43 4.73 4.98 12.98 11.60 4.32 4.46 2.55 1.26 2.66 0.00 2.29 3.76 3.88 0.92 11.13 6.83 5.95 7.81 4.86 7.93 59 ER8a ExonRegion 0 19.42 66.39 184.14 381.14 79.65 466.37 229.38 178.22 215.21 294.72 3.95 34.16 13.04 19.44 16.64 7.84 7.25 653.43 455.09 187.79 59.89 134.58 80.64 60 E8a_E9a KnownJunction 0 12.97 99.06 173.06 404.08 61.21 452.30 248.28 189.76 215.74 349.77 6.84 6.30 6.66 14.42 10.63 11.02 9.07 617.20 482.27 196.48 34.47 197.17 64.19 61 I8 Intron 0 3.15 0.76 3.74 4.16 1.99 16.04 10.10 2.40 6.17 3.50 1.08 1.33 2.16 1.21 3.21 3.87 0.61 10.43 6.52 7.92 7.38 3.88 9.84 62 I8_SR1 SilentIntronRegion 0 3.17 0.76 3.77 4.18 2.01 16.14 10.18 2.41 6.21 3.53 1.09 1.34 2.17 1.22 3.23 3.90 0.62 10.51 6.57 7.98 7.44 3.91 9.91 63 ER9a ExonRegion 0 13.46 57.83 132.00 324.14 47.80 371.30 237.10 168.40 185.36 270.51 8.82 12.27 7.47 25.53 18.22 18.70 7.11 424.61 303.10 173.77 47.84 126.41 63.86 64 E9_Da NovelBoundary 0 3.19 0.00 4.76 9.06 16.38 17.89 10.07 9.32 8.77 6.72 7.53 0.00 6.49 7.59 6.30 4.02 0.00 22.63 0.00 12.21 14.27 14.39 16.48 65 E9a_E10a KnownJunction 0 12.67 60.98 166.67 355.33 100.08 501.59 387.62 214.16 175.63 267.06 4.53 12.60 6.82 19.54 14.09 26.49 3.93 468.92 286.60 125.41 41.02 96.38 88.35 66 I9 Intron 0 6.19 2.65 4.16 5.94 5.95 13.32 21.24 6.98 12.67 4.83 4.40 2.13 3.41 3.71 2.18 5.80 2.15 9.71 5.01 9.80 11.11 8.69 14.80 67 I9_SR1 SilentIntronRegion 0 6.20 2.65 4.17 5.96 5.96 13.34 21.28 6.99 12.70 4.84 4.41 2.13 3.42 3.72 2.18 5.81 2.15 9.73 5.01 9.82 11.13 8.71 14.83 68 E10_Aa NovelBoundary 0 6.96 0.00 11.80 14.68 18.51 29.24 18.86 10.68 15.28 15.88 14.74 0.00 6.82 0.00 0.00 7.86 4.77 8.12 9.41 6.46 19.71 12.00 18.27 69 ER10a ExonRegion 0 15.71 60.59 140.48 277.27 58.78 463.75 272.97 155.78 152.38 225.68 4.57 12.92 13.03 18.55 13.29 9.27 5.03 379.24 291.64 114.64 31.60 112.15 72.09 70 E10_Da NovelBoundary 0 6.82 3.35 15.05 2.06 16.13 15.45 11.48 9.32 10.33 0.00 2.58 0.00 0.00 0.00 5.81 3.93 0.00 4.44 4.24 19.75 14.02 10.96 7.60 71 E10a_E11a KnownJunction 0 10.52 40.91 96.03 274.46 62.22 323.79 202.88 130.49 123.32 186.56 7.79 18.91 0.00 11.89 12.11 0.00 0.00 434.51 283.68 58.87 16.56 80.83 73.84 72 I10 Intron 0 3.50 1.21 3.98 6.98 1.94 12.24 13.12 6.30 11.43 4.06 1.40 0.29 1.33 1.56 2.01 3.34 1.96 14.44 6.95 10.82 10.62 7.02 6.60 73 I10_SR1 SilentIntronRegion 0 3.60 1.28 4.15 7.37 2.06 12.57 13.81 6.53 11.89 4.20 1.41 0.30 1.30 1.58 1.98 3.03 1.83 14.93 7.22 11.19 10.84 7.42 6.65 74 ER11a ExonRegion 0 47.43 130.43 169.18 416.26 116.21 499.85 341.58 145.16 156.40 192.33 3.35 10.09 6.44 11.84 12.97 11.70 5.35 320.22 231.54 101.52 33.84 105.01 60.08 75 IG35 Intergenic 0 5.32 7.23 6.18 8.98 13.92 32.45 25.38 16.76 19.80 11.56 2.35 2.05 4.36 2.82 1.73 3.87 0.29 15.22 12.16 15.87 10.89 6.69 15.54 76 IG35_AR1 ActiveIntergenicRegion 0 7.13 8.65 7.83 11.26 16.92 38.13 27.44 19.67 25.67 13.88 3.47 2.58 6.43 3.47 2.30 4.57 0.00 18.69 15.19 18.74 11.87 7.84 19.63 77 IG35_SR1 SilentIntergenicRegion 0 1.58 4.36 2.79 4.32 7.85 21.06 21.55 10.93 7.68 6.88 0.00 0.98 0.00 1.49 0.56 2.46 0.91 8.16 5.96 10.12 9.09 4.39 7.14