Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AP002748.2 Gene 0 12.08 23.63 9.44 15.87 21.49 16.68 27.00 14.41 13.22 12.09 4.30 14.01 15.36 10.96 14.92 23.23 18.47 15.91 21.22 22.02 8.38 8.80 22.95 2 398731 Transcript 0 65.53 69.16 100.25 110.53 55.66 55.42 88.11 122.11 140.24 118.23 33.39 16.13 14.60 14.86 22.60 64.49 61.68 149.85 50.29 78.52 54.89 33.42 55.06 3 ER1a ExonRegion 0 12.60 27.28 9.05 19.66 28.45 24.05 31.53 14.51 18.95 12.83 5.47 14.74 19.34 17.18 15.91 30.69 15.49 16.10 21.98 29.29 8.98 8.49 31.20 4 E1_Da NovelBoundary 0 35.49 48.68 41.07 56.67 16.47 52.70 43.24 47.85 50.29 41.58 2.68 6.30 6.17 0.00 8.90 10.94 17.86 31.09 25.88 5.62 14.15 0.00 20.06 5 Ix Intron 0 8.42 17.65 9.91 17.63 13.23 14.37 10.85 17.70 13.09 9.68 1.86 5.34 1.86 1.65 5.27 5.38 3.58 6.42 8.45 8.98 3.19 6.02 13.10 6 Ix_SR1 SilentIntronRegion 0 8.46 17.72 9.95 17.71 13.29 14.42 10.90 17.79 13.15 9.73 1.87 5.37 1.87 1.65 5.29 5.40 3.60 6.45 8.49 9.02 3.20 6.05 13.16 7 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER2a ExonRegion 0 0.00 0.80 1.07 0.36 0.35 0.88 1.04 0.00 0.91 0.20 0.00 0.38 0.61 0.28 0.76 0.90 0.29 0.08 0.28 1.30 0.10 0.18 0.26 9 ER3a ExonRegion 0 19.60 34.24 14.93 18.93 28.63 20.97 41.94 22.16 20.93 18.34 4.80 12.84 16.50 7.75 19.11 36.93 31.67 22.72 38.54 35.63 16.47 10.37 31.38 10 E3_Da NovelBoundary 0 20.00 52.62 12.68 22.54 16.04 17.94 51.85 55.74 31.68 9.46 12.58 7.20 15.58 8.18 4.45 16.58 13.37 17.74 30.12 31.83 14.70 5.27 30.82 11 E3a_E4a KnownJunction 0 369.10 401.90 635.52 650.80 328.35 365.19 470.51 665.60 839.98 703.49 179.10 40.51 66.55 67.10 108.29 334.70 319.21 906.63 250.64 410.16 300.11 155.53 295.44 12 E4a_E5a KnownJunction 0 179.81 137.02 231.69 284.95 101.02 74.79 229.51 380.67 378.99 317.08 106.61 40.51 0.00 25.72 39.56 169.02 172.04 385.85 130.73 220.39 166.43 114.08 123.95 13 ER4a ExonRegion 0 0.26 2.03 1.23 2.73 0.00 2.06 1.32 1.94 0.00 1.15 0.24 8.66 9.38 2.74 4.35 0.37 0.41 1.85 0.60 2.13 0.00 0.00 0.37 14 Ix Intron 0 15.13 13.57 8.70 9.68 8.93 14.86 19.56 9.82 13.16 12.22 0.92 5.10 5.52 0.55 8.22 2.83 3.15 8.32 4.55 8.11 2.10 4.97 8.40 15 Ix_SR1 SilentIntronRegion 0 15.42 13.83 8.87 9.86 9.10 15.14 19.94 9.99 13.41 12.45 0.94 5.20 5.63 0.56 8.37 2.89 3.21 8.48 4.64 8.27 2.10 5.06 8.56 16 ER5a ExonRegion 0 0.00 2.22 1.23 3.35 0.00 1.83 1.32 2.51 0.00 1.82 0.00 8.66 4.90 1.85 0.00 0.00 0.00 0.08 0.00 2.13 0.00 0.28 0.00 17 Ix Intron 0 39.00 7.84 6.26 13.06 16.05 19.65 3.97 6.62 9.47 8.06 2.49 9.17 6.62 4.54 11.04 8.92 4.24 4.72 2.73 1.82 11.33 7.14 17.62 18 Ix_AR1 ActiveIntronRegion 0 39.33 7.91 6.31 13.17 16.19 19.81 4.01 6.68 9.55 8.13 2.51 9.25 6.68 4.58 11.14 8.99 4.28 4.76 2.75 1.84 11.43 7.20 17.77 19 Ix Intron 0 20.66 26.77 19.62 32.73 26.52 24.01 22.64 37.62 24.79 28.45 6.29 10.43 17.35 12.89 18.67 15.75 9.24 18.07 22.90 13.20 10.84 13.09 18.00 20 Ix_AR1 ActiveIntronRegion 0 33.45 16.33 19.73 31.52 36.12 36.36 14.33 26.26 20.35 24.45 11.37 2.92 28.65 20.87 32.36 16.51 9.19 13.74 18.28 7.52 17.05 20.20 23.33 21 Ix_AR2 ActiveIntronRegion 0 28.87 33.08 24.48 44.39 24.98 40.00 30.54 55.83 20.19 38.10 9.24 2.97 18.27 14.82 20.48 23.09 15.93 23.68 25.41 13.51 15.89 10.08 22.50 22 Ix_AR3 ActiveIntronRegion 0 21.25 18.38 12.59 27.28 19.20 42.47 28.14 24.64 11.75 15.81 7.50 0.25 15.91 25.76 29.35 10.26 9.06 17.35 16.36 10.93 1.43 13.28 20.10 23 Ix_AR4 ActiveIntronRegion 0 22.25 40.37 27.69 44.44 35.43 20.54 29.91 54.13 39.60 41.08 6.02 21.47 19.54 10.42 16.27 20.02 10.92 24.37 31.60 19.13 12.77 16.51 20.63 24 Ix_SR2 SilentIntronRegion 0 6.40 9.41 7.20 7.05 11.51 10.13 12.78 12.53 13.74 6.71 4.25 1.52 5.16 8.53 11.46 5.87 6.68 14.60 27.71 11.65 8.48 9.43 14.32 25 Ix Intron 0 16.15 11.27 10.77 23.96 13.92 22.27 16.08 25.02 17.24 24.31 1.34 1.24 4.02 8.52 18.47 13.40 6.87 24.85 23.21 15.50 21.41 8.67 20.38 26 Ix_SR1 SilentIntronRegion 0 16.59 11.18 11.51 26.59 10.92 28.52 23.13 31.67 20.51 25.37 1.33 0.00 7.80 11.00 17.68 14.62 3.52 22.60 27.51 16.42 24.42 9.91 17.54 27 Ix_AR1 ActiveIntronRegion 0 16.13 11.69 10.30 21.88 17.45 16.38 9.17 18.79 14.32 23.89 1.39 2.56 0.20 6.18 19.78 12.52 10.55 27.90 19.38 14.98 18.87 7.63 23.91 28 Ix Intron 0 12.35 7.81 7.30 6.86 12.74 6.48 10.58 8.30 8.20 7.62 0.00 2.19 3.56 2.69 5.30 10.50 2.54 9.74 8.81 3.27 2.71 1.28 6.32 29 Ix_SR2 SilentIntronRegion 0 13.66 6.77 8.75 6.76 15.04 8.41 11.02 8.04 10.34 8.90 0.00 2.97 4.82 3.08 3.34 9.90 2.06 8.99 10.60 3.54 2.75 1.30 5.50 30 Ix Intron 0 13.51 8.77 6.61 8.87 10.92 9.49 6.55 11.11 10.48 12.77 2.67 2.61 4.11 4.76 10.91 6.66 6.07 10.29 6.78 5.51 6.08 3.71 8.11 31 Ix_AR1 ActiveIntronRegion 0 17.10 14.98 10.57 14.20 18.42 14.40 11.00 19.75 20.02 22.14 5.40 4.11 3.76 8.27 18.80 12.72 8.87 12.67 7.45 10.98 13.73 3.91 12.19 32 Ix_SR1 SilentIntronRegion 0 11.11 9.83 2.76 2.97 9.47 8.41 5.51 2.69 2.77 4.06 1.23 2.23 2.72 2.74 6.60 3.55 6.76 0.65 6.18 2.63 2.40 4.50 3.88 33 Ix_SR2 SilentIntronRegion 0 12.30 6.13 6.29 10.93 12.09 7.50 5.98 11.09 7.13 10.67 0.83 3.73 8.37 5.74 10.54 4.48 3.55 6.72 4.11 3.20 3.79 3.14 8.22 34 Ix_SR3 SilentIntronRegion 0 16.22 3.06 6.66 6.37 5.71 6.25 5.46 12.10 14.32 15.35 3.66 0.00 2.37 2.09 12.65 10.42 9.62 24.15 13.01 9.10 7.38 3.04 11.89 35 Ix_SR4 SilentIntronRegion 0 12.10 4.32 7.66 8.23 0.57 8.96 1.77 10.82 11.86 15.12 3.57 0.00 0.00 2.08 3.97 2.94 1.73 22.91 7.48 2.97 2.29 3.54 5.42 36 Ix Intron 0 5.55 5.93 12.24 8.89 10.14 16.58 9.65 15.01 23.60 25.42 3.94 5.20 0.00 8.60 6.32 7.80 7.70 22.22 18.57 11.16 8.34 6.68 5.99 37 Ix_AR1 ActiveIntronRegion 0 5.62 5.99 12.37 8.98 10.25 16.77 9.76 15.19 23.87 25.70 3.99 5.26 0.00 8.68 6.39 7.89 7.78 22.47 18.78 11.29 8.43 6.76 6.06 38 E6_Aa NovelBoundary 0 2080.52 1915.32 889.18 1027.61 2188.88 1242.07 2486.49 1151.39 961.13 1011.97 844.00 887.24 1133.53 994.35 934.67 1980.76 1882.28 1568.22 1538.68 2291.11 1068.44 659.48 1598.08 39 ER6a ExonRegion 0 8.41 16.99 7.58 14.04 14.14 8.98 15.77 11.56 2.43 9.16 4.27 18.89 14.11 11.14 15.46 7.84 15.96 15.34 9.80 5.65 1.94 11.85 12.94