Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PC Gene 0 10.91 15.51 44.19 32.69 16.40 43.28 22.74 42.75 16.57 151.38 15.34 3.43 1.44 1.11 0.84 6.55 12.93 86.79 80.34 83.27 90.93 43.47 61.40 2 355677 Transcript 0 0.86 0.02 1.94 0.41 0.00 1.11 1.61 1.32 0.00 1.56 0.39 0.00 0.00 0.23 0.00 0.00 0.00 2.50 1.29 3.04 2.01 1.05 1.82 3 393960 Transcript 0 0.03 5.57 6.26 12.81 3.71 19.50 11.62 25.88 8.83 68.38 1.33 0.00 0.00 0.00 0.00 0.00 0.00 26.66 26.41 36.20 3.45 0.38 4.74 4 393958 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 393955 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 6 ER1a ExonRegion 0 4.27 6.58 7.98 7.73 5.35 26.01 22.48 10.84 8.42 55.03 5.55 0.00 0.00 0.00 0.00 3.62 11.22 15.79 40.89 46.61 39.87 15.83 38.82 7 E1a_E2a KnownJunction 0 0.00 3.35 1.83 9.32 8.49 50.08 19.87 22.96 8.39 75.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.41 14.40 31.19 2.47 0.00 0.00 8 E1a_E3a KnownJunction 0 9.78 5.79 22.29 15.25 21.14 30.78 30.21 11.21 8.01 65.54 4.74 0.00 0.00 0.00 0.00 12.82 16.27 27.94 95.34 50.43 77.72 29.15 88.18 9 ER2a ExonRegion 0 0.08 4.13 7.28 15.76 2.65 8.42 8.23 25.69 8.99 72.54 1.30 0.00 0.00 0.00 0.00 0.00 0.00 26.55 21.08 47.83 5.10 1.13 9.87 10 E2_Da NovelBoundary 0 3.70 7.89 2.99 21.41 0.00 11.58 15.68 4.52 1.22 13.70 0.00 0.00 0.00 0.00 0.00 0.00 4.77 18.36 0.00 17.96 8.03 0.00 10.67 11 E2a_E3a KnownJunction 0 0.00 9.21 9.67 13.35 0.00 0.00 6.76 29.00 9.11 56.92 2.68 0.00 0.00 0.00 0.00 0.00 0.00 35.03 43.77 29.59 2.78 0.00 4.35 12 ER3a ExonRegion 0 1.90 5.74 21.84 21.81 18.80 22.43 28.89 28.98 12.51 98.66 8.97 0.00 0.00 0.00 0.00 6.55 6.86 49.60 74.90 50.85 53.74 25.06 50.68 13 E3a_E5a KnownJunction 0 0.00 2.50 12.18 5.89 20.80 18.63 23.54 18.85 6.13 74.86 7.00 0.00 0.00 0.00 0.00 0.00 4.11 25.25 32.28 21.41 30.09 27.98 22.79 14 I3_AR1 ActiveIntronRegion 0 0.93 0.91 4.89 4.26 0.49 0.44 4.67 5.91 1.93 5.41 0.00 0.22 0.10 0.00 0.00 1.62 0.86 6.62 2.41 13.44 2.62 0.06 12.28 15 I3_AR3 ActiveIntronRegion 0 0.00 0.87 7.35 1.75 0.00 2.62 3.50 3.83 1.68 7.37 0.00 2.16 4.69 0.00 0.00 0.00 1.89 3.96 6.37 7.75 2.52 0.00 13.63 16 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 17 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER5a ExonRegion 0 1.15 9.03 26.77 23.66 6.06 38.50 17.38 25.60 15.13 97.62 19.31 0.00 2.93 0.00 0.77 8.06 20.41 64.24 83.94 79.24 88.65 28.48 44.35 19 E5a_E6a KnownJunction 0 3.78 0.00 52.22 42.12 7.89 15.33 13.65 37.54 13.14 150.61 24.37 0.00 6.33 0.00 0.00 27.77 13.93 183.68 251.11 119.78 83.09 70.66 172.26 20 ER6a ExonRegion 0 5.27 9.44 27.78 21.79 12.11 29.11 18.89 28.09 16.88 124.98 16.49 6.04 2.18 0.19 0.56 7.82 13.26 99.96 89.69 85.60 88.66 40.22 66.51 21 E6a_E7a KnownJunction 0 17.48 17.56 30.87 34.00 11.71 61.27 28.75 50.19 17.13 161.17 14.79 5.85 0.00 4.94 0.00 3.59 17.48 103.01 154.17 118.06 159.63 54.44 65.90 22 ER7a ExonRegion 0 7.61 8.47 33.43 26.62 11.98 32.06 14.56 38.84 13.10 162.31 17.36 2.84 2.71 1.02 0.63 5.94 17.64 97.76 84.26 83.26 112.12 38.51 47.43 23 E7a_E8a KnownJunction 0 10.74 3.09 41.66 31.83 24.19 34.18 8.70 52.99 16.52 205.74 20.95 12.60 5.84 0.00 0.00 8.03 29.83 127.88 120.10 77.28 131.46 52.60 64.79 24 ER8a ExonRegion 0 7.06 10.81 37.63 23.78 13.09 33.81 9.40 39.07 18.18 175.85 17.12 8.51 1.77 2.74 0.00 4.50 21.93 125.50 99.23 81.97 121.66 57.14 61.47 25 E8a_E9a KnownJunction 0 11.11 12.23 49.70 31.43 19.52 41.62 14.18 43.91 18.40 211.67 9.53 11.70 6.82 0.00 0.00 15.72 22.35 164.28 180.52 83.35 159.39 75.13 109.95 26 ER9a ExonRegion 0 9.26 10.51 44.56 30.79 11.32 52.01 21.05 44.52 21.10 193.88 12.60 7.37 1.63 1.43 0.00 7.03 14.01 134.38 94.97 83.32 118.59 58.60 77.32 27 E9a_E10a KnownJunction 0 13.93 15.33 35.13 26.77 15.45 68.60 30.03 64.28 24.07 214.49 20.11 12.45 0.00 2.12 0.00 0.00 13.28 144.17 125.18 101.69 177.55 70.60 111.23 28 ER10a ExonRegion 0 9.25 14.60 38.30 31.01 9.07 37.34 16.72 42.24 18.63 181.59 14.53 3.67 1.42 1.14 0.00 9.48 18.59 129.44 88.14 96.01 122.23 67.55 85.32 29 E10a_E11a KnownJunction 0 19.86 25.72 47.57 29.07 27.84 60.48 33.21 43.62 17.79 190.10 31.11 0.00 0.00 2.12 0.00 12.13 22.63 123.37 126.03 105.21 145.18 74.15 83.83 30 ER11a ExonRegion 0 7.83 15.62 45.19 41.02 16.84 55.82 21.98 52.64 20.01 185.08 13.63 6.55 2.25 1.27 0.00 7.87 10.82 151.47 92.27 127.44 129.89 69.86 100.14 31 E11a_E12a KnownJunction 0 3.78 24.60 65.73 44.05 3.74 77.29 22.52 47.73 24.45 228.43 18.69 0.00 6.82 2.47 0.00 19.31 18.51 200.47 105.98 143.56 92.23 77.15 113.19 32 ER12a ExonRegion 0 3.78 14.42 50.21 29.62 10.03 37.44 20.17 49.54 18.66 208.55 21.06 2.47 2.73 0.14 0.00 11.05 12.33 111.74 117.19 121.62 119.69 76.77 86.44 33 E12a_E13a KnownJunction 0 2.82 32.36 40.68 24.97 7.47 41.57 29.54 29.78 23.15 186.37 15.53 0.00 0.00 0.00 0.00 15.55 13.46 116.32 100.71 84.82 87.17 48.13 68.46 34 ER13a ExonRegion 0 14.73 17.30 76.80 45.98 19.87 44.27 29.21 60.46 26.31 250.52 30.61 11.50 2.77 1.99 0.00 14.84 21.10 189.33 153.37 122.64 137.81 82.46 101.26 35 E13a_E14a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E13a_E15a KnownJunction 0 6.82 12.10 109.93 63.83 12.56 42.93 18.28 86.50 27.11 279.31 36.75 5.85 13.96 2.47 0.00 11.45 30.11 131.99 213.46 136.21 173.35 93.32 104.48 37 ER14a ExonRegion 0 1.71 0.04 2.05 0.82 0.00 2.23 3.22 2.64 0.00 3.11 0.78 0.00 0.00 0.46 0.00 0.00 0.00 5.00 2.58 6.08 4.01 2.11 3.65 38 E14_Da NovelBoundary 0 0.00 17.56 83.02 69.92 7.13 25.67 6.01 87.94 52.11 79.16 14.74 6.30 0.00 21.48 19.16 0.00 12.72 39.21 16.94 23.52 23.29 7.96 7.17 39 Ix Intron 0 0.80 2.86 31.73 18.88 1.51 15.33 5.35 10.89 4.49 21.51 4.90 0.33 0.36 1.72 2.92 1.40 0.62 26.31 5.68 11.19 6.21 3.13 5.24 40 Ix_AR1 ActiveIntronRegion 0 0.29 2.47 28.34 18.03 1.18 6.75 5.50 9.04 2.51 16.31 1.63 0.00 0.00 2.91 3.75 0.41 0.51 17.49 8.40 12.51 4.67 0.92 4.23 41 Ix_SR1 SilentIntronRegion 0 0.94 2.99 32.80 19.21 1.61 17.74 5.33 11.44 5.06 23.03 5.82 0.43 0.46 1.41 2.70 1.67 0.65 28.84 4.97 10.88 6.66 3.75 5.54 42 I14_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.00 4.30 1.54 1.11 0.00 5.39 5.66 0.00 0.00 0.00 1.24 3.96 2.44 11.28 3.19 0.18 14.88 0.00 17.34 43 I14_AR1 ActiveIntronRegion 0 0.00 0.00 8.31 1.44 2.58 9.85 4.97 4.66 2.03 14.99 11.21 0.00 0.62 7.24 2.44 1.91 2.82 12.39 9.81 16.57 18.50 2.28 16.47 44 ER15a ExonRegion 0 6.10 17.57 91.19 57.02 19.86 64.49 26.95 69.73 28.10 262.92 35.63 9.67 4.98 1.09 1.74 9.02 23.90 127.27 112.70 112.46 160.75 68.94 64.93 45 E15_Da NovelBoundary 0 0.00 0.00 10.50 9.22 0.00 7.72 4.11 5.05 2.95 6.21 13.27 5.55 0.00 0.00 0.00 0.00 0.00 25.99 14.12 5.50 23.97 30.13 19.72 46 E15a_E16a KnownJunction 0 24.67 30.72 139.38 76.88 16.30 67.75 38.60 97.96 27.03 361.32 47.75 32.26 6.66 7.30 0.00 7.95 26.46 185.79 200.48 163.31 192.19 117.69 138.12 47 I15_AR1 ActiveIntronRegion 0 0.86 0.00 3.77 2.34 0.00 5.43 0.57 2.56 3.74 8.50 0.60 0.00 0.00 0.00 0.00 0.00 0.50 14.99 9.66 4.19 13.56 6.07 14.35 48 E16_Aa NovelBoundary 0 0.00 0.00 15.23 12.29 4.33 7.38 2.25 13.60 1.79 20.25 2.58 0.00 0.00 0.00 0.00 0.00 4.49 13.56 33.04 6.07 16.87 17.57 17.41 49 ER16a ExonRegion 0 11.66 13.62 74.53 54.47 12.31 44.46 34.61 65.45 16.76 252.47 28.63 8.76 6.31 3.25 1.16 11.00 15.62 123.18 142.42 113.29 144.88 64.06 87.71 50 E16a_E17a KnownJunction 0 16.45 22.17 45.50 20.14 11.46 40.03 32.46 38.98 17.91 191.15 12.58 0.00 0.00 0.00 0.00 3.76 21.51 101.73 72.66 83.86 107.55 31.05 66.50 51 ER17a ExonRegion 0 9.10 15.83 56.39 25.89 16.71 61.92 25.21 48.91 14.64 173.50 19.72 1.56 2.75 1.29 1.80 5.19 10.66 85.05 77.04 80.11 113.92 34.93 62.45 52 E17a_E18a KnownJunction 0 19.56 9.67 34.95 23.71 22.67 79.44 31.27 55.45 17.88 158.46 22.32 0.00 6.01 0.00 0.00 4.19 13.37 85.10 93.65 65.39 94.70 32.45 62.14 53 ER18a ExonRegion 0 9.92 11.90 59.63 28.26 5.90 46.04 22.28 63.61 17.84 175.18 20.39 5.54 2.51 0.30 1.33 7.46 13.48 104.05 98.60 66.30 114.21 42.37 69.68 54 E18a_E19a KnownJunction 0 22.45 23.35 78.83 48.18 7.72 58.66 25.70 71.51 23.67 197.95 23.11 25.21 0.00 2.47 0.00 18.20 19.26 106.29 108.80 95.11 126.21 61.42 56.08 55 ER19a ExonRegion 0 15.61 18.17 45.32 29.32 13.41 44.96 27.09 50.84 16.91 167.09 18.01 6.90 0.82 0.65 0.94 8.41 13.31 100.32 94.70 97.92 99.87 44.45 68.38 56 E19a_E20a KnownJunction 0 16.30 18.88 26.61 21.28 26.23 50.88 39.66 28.96 13.11 146.37 1.95 0.00 0.00 0.00 0.00 7.69 21.60 64.38 54.31 87.37 89.21 36.74 44.90 57 ER20a ExonRegion 0 12.37 19.03 39.89 20.42 11.08 33.12 19.97 26.48 12.12 118.94 10.14 1.66 0.88 1.51 1.08 5.31 14.02 50.14 54.25 76.26 79.89 30.01 49.68 58 E20_Da NovelBoundary 0 7.48 0.00 25.22 14.98 12.14 7.38 6.67 8.95 4.75 22.62 0.00 0.00 0.00 0.00 0.00 0.00 4.02 22.72 3.95 9.78 22.49 12.43 25.01 59 E20a_E21a KnownJunction 0 13.26 35.45 57.74 34.63 24.02 52.64 31.93 27.97 13.22 155.85 19.22 0.00 0.00 0.00 0.00 0.00 3.74 72.75 50.35 78.17 80.87 26.27 59.50 60 I20 Intron 0 1.55 2.48 6.68 5.95 3.92 5.37 5.17 5.03 1.80 7.92 2.36 0.00 0.00 0.00 0.00 0.00 1.61 7.62 7.00 11.42 14.52 9.15 11.47 61 I20_SR1 SilentIntronRegion 0 1.57 2.52 6.78 6.03 3.97 5.43 5.24 5.10 1.81 8.04 2.39 0.00 0.00 0.00 0.00 0.00 1.63 7.73 7.07 11.59 14.71 9.28 11.63 62 E21_Aa NovelBoundary 0 0.00 0.00 6.59 10.72 0.00 7.72 11.04 15.53 6.28 16.63 2.16 0.00 0.00 0.00 0.00 0.00 0.00 11.52 9.60 11.31 13.22 7.53 28.34 63 ER21a ExonRegion 0 15.93 24.69 49.61 39.82 30.69 69.40 33.74 51.04 23.02 167.57 15.75 0.00 1.51 2.06 1.03 6.38 10.75 91.38 80.44 105.64 96.63 46.29 78.98 64 E21a_E22a KnownJunction 0 43.04 31.70 55.79 28.37 24.79 46.05 20.49 59.68 34.52 183.71 22.64 0.00 0.00 2.47 0.00 4.36 8.79 66.24 97.04 133.46 119.17 54.74 88.27 65 ER22a ExonRegion 0 24.66 30.45 47.05 42.53 32.42 67.24 35.29 52.42 18.27 168.35 23.07 0.89 0.00 1.65 2.26 5.07 9.35 86.47 79.69 102.92 89.98 45.19 76.58 66 E22a_E23a KnownJunction 0 18.08 27.56 54.26 58.50 64.18 90.18 42.84 52.62 25.29 158.83 15.58 0.00 0.00 0.00 6.18 4.36 8.88 87.59 79.63 75.87 68.02 22.04 112.76 67 ER23a ExonRegion 0 26.19 31.80 58.54 62.77 40.40 72.62 35.94 50.37 20.23 185.66 11.09 2.45 0.96 2.07 2.53 5.62 14.70 90.73 95.60 94.06 95.41 38.65 81.47 68 E23a_E24a KnownJunction 0 45.12 33.55 57.95 82.37 62.65 94.60 63.02 50.27 14.41 152.66 12.27 0.00 0.00 0.00 5.19 3.50 14.21 78.47 134.69 74.21 96.06 47.52 58.64 69 ER24a ExonRegion 0 20.08 28.86 37.75 42.61 30.23 72.13 31.32 41.42 13.52 127.01 11.09 2.27 0.00 1.79 0.37 6.79 10.04 59.95 77.76 71.84 86.93 36.41 61.04 70 E24a_E25a KnownJunction 0 18.08 31.31 50.29 62.86 29.20 95.06 36.13 49.04 22.14 146.10 16.64 0.00 0.00 0.00 0.00 0.00 12.62 81.17 92.99 85.90 93.04 29.58 87.16 71 ER25a ExonRegion 0 12.90 15.62 54.06 42.19 20.76 41.25 25.57 49.66 18.68 136.86 12.65 2.05 0.00 0.76 1.06 6.80 14.04 67.92 72.35 79.58 72.66 49.76 54.88