Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPR137 Gene 0 33.24 32.98 108.50 56.83 28.17 81.63 24.71 108.82 109.55 164.13 106.54 16.16 29.66 75.50 96.37 55.02 75.63 90.73 61.10 73.01 112.08 75.10 71.07 2 377702 Transcript 0 27.96 25.77 108.17 65.96 18.77 57.40 16.29 129.97 131.64 161.79 121.19 7.55 27.11 61.42 81.80 38.09 79.93 63.01 47.08 69.73 113.49 48.13 48.12 3 411458 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 438980 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 313074 Transcript 0 13.61 7.07 16.83 6.66 7.88 44.60 10.50 17.76 23.20 31.03 18.45 3.48 3.79 22.71 26.00 16.56 14.89 15.50 21.92 18.84 33.05 21.79 30.81 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 1 88.61 36.84 23.57 11.19 39.05 217.32 89.61 15.81 11.92 21.60 28.11 0.00 0.00 20.48 71.57 38.88 31.70 17.66 94.40 33.36 64.25 5.88 63.34 10 ER2a ExonRegion 0 0.00 0.00 0.09 0.00 0.03 1.13 0.03 0.02 0.09 3.14 0.02 0.00 0.00 1.66 4.40 0.07 0.00 0.29 1.96 5.28 0.05 0.03 0.11 11 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I2 Intron 1 5.25 13.40 8.93 5.17 8.72 26.19 7.86 12.09 12.60 29.54 22.31 1.45 1.26 15.18 14.58 11.63 15.50 15.33 17.24 10.96 13.22 9.65 10.34 13 I2_AR1 ActiveIntronRegion 1 9.31 23.69 15.41 9.18 13.99 43.61 12.91 21.43 21.22 46.73 33.32 2.63 1.38 20.11 22.56 18.02 22.76 26.64 24.99 16.69 20.95 16.10 17.11 14 ER3a ExonRegion 0 18.59 9.17 3.55 3.49 7.33 45.75 9.34 3.76 4.37 6.58 11.63 2.69 4.11 15.84 33.59 28.92 17.42 10.78 31.70 26.20 21.52 22.71 51.21 15 E3_Da NovelBoundary 0 5.78 12.04 47.96 25.20 16.04 35.72 30.43 78.41 100.29 114.43 12.32 0.00 6.82 33.79 26.70 15.30 4.77 99.70 47.06 15.15 18.97 57.01 66.58 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I3 Intron 0 9.06 17.67 40.84 30.96 17.15 63.48 14.91 63.55 73.68 112.97 38.83 6.46 10.14 57.90 52.98 33.04 33.43 71.17 57.18 53.45 76.58 48.97 72.42 18 I3_AR1 ActiveIntronRegion 1 9.11 17.77 41.07 31.13 17.25 63.83 14.99 63.90 74.09 113.61 39.04 6.49 10.20 58.22 53.27 33.23 33.62 71.57 57.50 53.75 77.00 49.25 72.82 19 E4_Aa NovelBoundary 0 149.80 60.32 131.37 95.49 61.55 201.42 72.78 164.75 188.11 276.14 122.03 28.66 20.29 142.98 122.26 74.00 97.24 159.97 175.25 119.91 178.04 112.30 175.51 20 ER4a ExonRegion 0 22.24 12.05 46.93 16.47 16.32 88.04 22.17 49.52 65.22 86.51 43.73 7.75 7.27 52.28 44.41 20.77 27.24 35.74 34.06 30.32 77.64 42.65 41.21 21 E4_Ab KnownBoundary 0 36.38 20.33 92.37 45.72 30.73 115.39 24.38 99.60 130.24 165.25 59.28 24.61 19.15 64.63 48.09 49.56 43.29 73.58 44.14 56.25 95.45 68.21 84.42 22 ER4b ExonRegion 0 33.63 45.25 150.93 80.55 37.46 114.86 36.80 158.29 166.92 241.29 171.30 31.40 49.90 122.23 127.16 83.82 112.50 148.24 97.23 110.00 147.78 92.30 95.01 23 E4a_E5a KnownJunction 0 54.68 71.11 171.28 97.42 48.47 125.61 41.03 134.81 167.10 229.91 132.35 36.16 41.88 131.73 112.86 75.71 130.72 136.42 100.99 95.62 166.43 64.60 79.81 24 ER5a ExonRegion 0 38.39 39.70 152.46 78.72 31.36 89.42 38.37 152.55 130.72 189.31 125.45 19.83 38.93 95.66 89.71 37.75 103.85 123.58 67.34 89.40 150.78 86.30 52.92 25 E5a_E6a KnownJunction 0 35.41 42.10 153.51 84.21 31.41 91.99 30.16 158.05 108.01 160.69 127.98 18.46 40.09 67.28 63.79 30.08 82.94 136.63 64.47 96.39 154.75 97.91 61.29 26 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.63 0.00 0.00 2.30 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 27 E5a_E8a NovelJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 12.74 0.00 13.64 9.18 8.90 12.90 8.42 0.00 0.00 2.94 0.00 0.00 0.00 28 I5 Intron 0 10.63 6.50 10.84 4.33 7.33 11.73 7.46 7.45 11.21 12.75 15.30 0.54 1.76 13.37 12.13 8.14 9.05 4.05 2.90 5.82 6.04 3.80 6.71 29 I5_AR1 ActiveIntronRegion 0 13.49 7.56 10.65 4.32 4.26 6.82 8.44 1.35 8.80 10.90 9.24 0.00 0.00 11.10 7.62 3.16 3.51 2.93 3.38 4.52 7.02 4.43 6.21 30 E6_Aa NovelBoundary 0 24.60 9.08 32.11 17.08 19.27 12.32 14.00 23.58 19.91 35.16 13.21 6.15 6.82 20.07 10.75 18.63 48.62 13.39 0.00 8.76 8.71 12.00 4.35 31 ER6a ExonRegion 0 37.22 41.78 140.57 65.09 38.18 100.06 27.90 125.62 119.42 185.33 105.80 12.18 20.09 80.85 100.65 45.53 90.28 122.36 68.34 81.99 137.39 78.40 78.93 32 E6_Da NovelBoundary 0 14.45 12.63 34.48 5.26 3.90 31.06 17.58 22.80 16.12 23.85 7.42 12.30 0.00 29.31 27.44 20.85 15.61 17.58 3.67 5.75 12.48 5.88 8.28 33 E6a_E7a KnownJunction 0 28.82 43.48 100.47 55.54 44.48 96.08 9.76 92.99 94.62 158.89 64.28 11.85 13.47 58.39 69.97 61.10 39.46 112.88 111.81 72.61 140.85 94.42 89.46 34 E6a_E8a KnownJunction 0 6.67 3.03 3.16 3.96 4.16 5.79 1.90 6.74 5.18 13.57 19.74 0.00 6.17 9.59 14.09 4.19 12.81 0.00 4.05 0.00 6.18 0.00 0.00 35 I6 Intron 0 6.40 7.91 7.89 7.90 4.63 7.93 5.72 5.57 6.36 11.83 5.01 3.41 0.00 18.04 11.95 8.99 7.13 2.38 1.38 6.44 7.62 2.70 5.08 36 I6_AR1 ActiveIntronRegion 0 6.51 8.05 8.03 8.02 4.71 8.06 5.82 5.66 6.47 12.00 5.08 3.43 0.00 18.36 12.16 9.12 7.26 2.41 1.40 6.55 7.75 2.75 5.16 37 E7_Aa NovelBoundary 0 17.93 6.05 20.99 13.09 11.54 13.57 0.00 29.61 11.05 30.92 23.06 0.00 0.00 35.91 41.78 22.30 18.33 13.51 0.00 2.36 8.90 11.21 11.78 38 ER7a ExonRegion 0 80.27 62.02 147.75 64.97 40.44 102.34 37.65 127.61 134.40 224.95 121.46 9.96 23.73 94.42 105.61 58.11 78.91 146.98 58.55 100.33 146.86 95.59 90.53 39 E7_Da NovelBoundary 0 65.49 31.11 40.54 33.50 15.96 31.57 17.93 50.85 46.18 52.68 32.59 0.00 0.00 26.78 25.34 12.39 16.83 29.10 23.15 25.50 27.80 11.76 12.04 40 E7a_E8a KnownJunction 0 57.12 91.96 228.91 70.45 52.12 199.26 23.63 165.28 146.15 297.87 133.72 6.30 46.91 93.47 142.65 65.97 117.25 94.31 52.52 127.71 173.84 99.14 81.86 41 I7 Intron 1 19.01 6.64 14.90 10.77 8.73 20.95 7.56 23.12 15.77 32.08 25.24 2.91 3.15 15.94 20.19 18.19 8.08 11.62 1.30 11.29 16.18 11.90 9.59 42 I7_AR1 ActiveIntronRegion 1 19.32 6.75 15.14 10.95 8.88 21.25 7.69 23.50 16.03 32.57 25.63 2.96 3.16 16.18 20.52 18.49 8.21 11.81 1.32 11.47 16.45 12.09 9.74 43 E8_Aa NovelBoundary 0 32.08 23.22 36.72 46.28 11.54 33.62 19.21 60.79 61.92 78.60 36.32 6.30 0.00 60.63 40.67 28.11 19.07 52.15 8.75 35.22 34.16 5.76 18.52 44 ER8a ExonRegion 0 32.81 53.88 196.21 100.43 60.28 171.65 41.62 174.99 183.91 305.49 187.06 16.68 45.99 136.17 162.58 100.38 124.18 158.03 69.46 113.13 174.71 141.10 119.92 45 E8a_E9a KnownJunction 1 27.19 37.36 225.57 105.28 26.83 100.11 24.64 198.76 170.69 267.33 170.62 0.00 33.93 54.51 107.79 71.01 101.54 159.93 61.46 107.70 162.23 104.95 118.91 46 E8a_E10a NovelJunction 0 3.78 2.89 36.16 6.79 0.00 2.27 0.00 28.38 27.81 68.95 27.69 0.00 0.00 9.89 13.35 4.36 18.51 9.82 3.67 20.20 14.21 0.00 6.74 47 ER9a ExonRegion 0 43.54 32.74 229.21 129.85 31.55 75.02 26.27 238.76 205.53 281.53 187.15 19.54 60.02 132.67 181.00 130.72 127.04 173.94 128.40 133.97 183.78 176.36 134.22 48 E9a_E10a KnownJunction 1 38.67 27.82 163.39 108.81 21.39 66.33 17.36 215.23 215.48 242.56 213.53 0.00 39.61 100.95 126.83 60.92 141.09 114.78 89.79 124.26 189.29 69.99 85.45 49 E9a_E10b KnownJunction 0 10.59 0.00 26.11 3.56 3.31 16.35 5.48 21.44 16.87 31.16 29.22 6.30 6.17 19.37 20.27 34.86 28.61 17.00 8.85 8.44 26.87 20.57 25.10 50 ER10a ExonRegion 0 38.55 46.47 157.96 85.11 30.76 100.09 29.62 167.95 174.27 229.23 130.30 22.66 35.55 73.71 104.47 49.17 85.88 74.26 47.39 84.93 144.99 74.40 58.92 51 E10_Ab KnownBoundary 0 113.65 115.05 251.56 159.22 50.68 139.81 82.94 313.03 276.27 347.73 135.46 30.46 25.49 65.63 156.25 86.30 63.49 85.89 59.95 121.76 149.50 178.68 54.89 52 ER10b ExonRegion 0 119.20 78.43 150.24 90.98 72.55 155.73 60.08 210.02 193.17 240.53 180.09 47.38 64.60 75.05 158.20 97.46 135.83 62.68 90.15 155.12 166.98 183.82 92.70 53 E10_Da KnownBoundary 1 137.21 107.81 150.11 103.08 103.40 198.24 45.18 181.71 177.23 222.93 214.79 35.86 170.28 130.08 186.41 142.27 137.17 163.53 173.09 126.88 198.43 150.76 128.04 54 ER10c ExonRegion 0 16.31 18.12 63.47 43.19 15.24 33.18 9.22 71.86 76.95 135.58 89.86 17.09 37.23 59.56 105.30 44.42 69.94 48.25 54.69 41.56 103.62 52.46 58.30 55 E10_Db KnownBoundary 0 33.86 15.79 36.28 27.44 7.81 24.25 3.93 63.13 51.59 75.75 43.43 0.00 6.82 36.97 79.61 20.17 23.19 31.92 37.55 18.66 57.58 20.02 22.02 56 ER10d ExonRegion 1 22.41 12.88 20.03 9.04 9.66 26.77 8.60 15.87 17.42 30.62 48.14 10.50 7.60 14.69 62.63 12.16 29.56 11.62 25.34 8.90 55.55 21.27 29.20