Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SSH3 Gene 0 17.81 13.01 46.30 41.43 8.63 58.56 12.41 35.37 22.95 29.45 1.81 0.66 3.63 20.06 20.93 20.09 15.35 17.33 6.26 16.80 107.85 49.83 50.49 2 308127 Transcript 0 9.94 10.98 44.04 39.96 6.44 66.73 13.16 30.35 19.08 28.81 1.08 0.00 3.45 19.42 14.45 22.14 7.62 24.86 13.52 19.63 105.85 54.35 64.07 3 308298 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 376757 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 5.34 7.24 1.76 3.15 3.96 35.22 7.78 2.27 0.03 2.89 1.93 0.00 0.00 5.48 9.43 6.63 0.00 1.73 2.52 5.14 36.22 15.54 29.43 6 E1_Ab KnownBoundary 0 9.93 17.69 8.22 10.72 12.14 90.63 11.61 6.33 7.96 7.63 2.05 0.00 0.00 9.54 9.77 14.53 0.00 11.36 4.24 15.15 80.62 41.76 90.23 7 ER1b ExonRegion 0 5.33 1.50 5.94 5.85 3.12 35.66 6.04 4.73 6.72 4.74 0.92 0.00 0.00 3.59 2.82 4.04 0.00 4.23 0.36 6.61 39.40 13.52 29.96 8 E1a_E2a KnownJunction 0 0.00 0.00 11.35 5.53 0.00 5.79 0.00 0.00 3.33 1.16 0.00 0.00 0.00 2.18 0.00 7.35 0.00 0.00 0.00 2.68 29.16 3.12 7.85 9 ER2a ExonRegion 0 0.00 2.35 14.93 10.01 2.04 3.81 2.23 7.91 7.83 8.60 0.05 0.00 0.00 2.35 1.91 7.35 1.39 7.29 0.00 5.99 59.79 10.42 21.48 10 E2a_E3a KnownJunction 0 0.00 6.71 29.63 12.15 8.32 5.68 6.18 22.80 14.18 19.31 0.00 0.00 0.00 7.36 8.90 8.72 4.11 19.44 0.00 12.34 92.05 22.35 51.39 11 ER3a ExonRegion 0 5.64 9.49 24.78 21.69 4.46 16.06 8.06 22.89 12.60 14.91 1.93 0.00 0.00 13.07 14.89 19.22 16.21 13.39 1.91 16.74 76.44 40.24 83.86 12 E3_Ab KnownBoundary 0 13.11 14.67 33.14 25.54 8.66 36.00 10.69 31.67 16.55 13.54 1.95 0.00 5.84 14.42 13.60 39.22 25.43 15.79 4.71 24.03 59.12 53.58 136.24 13 ER3b ExonRegion 0 6.30 7.23 37.44 28.42 6.77 58.21 6.23 28.87 12.80 15.89 0.21 0.00 0.00 8.92 21.73 20.17 8.43 19.66 1.63 11.36 75.44 51.38 73.98 14 E3_Da KnownBoundary 0 10.52 6.71 41.48 30.40 11.21 66.67 3.80 28.30 13.02 21.22 0.00 0.00 0.00 11.89 23.98 15.47 0.00 25.16 0.00 15.08 62.64 44.64 62.14 15 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER3c ExonRegion 0 5.39 12.93 41.64 29.40 8.06 64.93 15.12 29.64 20.60 21.02 0.34 0.00 2.75 13.69 11.14 12.22 13.02 15.05 1.14 14.31 107.81 36.24 41.85 17 E3b_E5a KnownJunction 0 9.71 17.96 35.60 38.96 12.05 31.06 18.37 48.71 20.89 25.63 2.68 0.00 0.00 6.65 30.41 16.83 0.00 18.86 0.00 20.52 106.50 33.25 50.88 18 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E4a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 13.55 13.18 44.92 35.37 4.20 37.97 6.62 32.74 17.20 25.75 0.40 0.00 1.58 19.16 13.39 14.53 23.66 17.81 2.60 20.82 115.28 58.34 40.41 21 E5_Da NovelBoundary 0 0.00 6.31 20.34 11.09 8.57 24.87 2.21 11.25 4.20 9.89 0.00 0.00 0.00 2.47 0.00 8.54 4.77 6.09 4.42 5.94 14.89 8.39 11.44 22 E5a_E6a KnownJunction 0 2.82 9.27 43.70 25.94 8.15 17.89 0.00 18.07 16.46 21.68 0.00 0.00 0.00 12.07 14.59 18.20 17.30 13.10 0.00 14.89 100.70 52.11 38.33 23 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.76 0.00 24 E6_Aa NovelBoundary 0 9.48 0.00 10.59 25.11 0.00 40.09 6.23 7.31 6.63 9.83 2.16 0.00 0.00 2.47 0.00 0.00 0.00 10.90 0.00 2.88 8.53 20.57 20.06 25 ER6a ExonRegion 0 5.70 6.44 31.33 24.97 4.16 29.52 5.02 18.24 19.13 22.91 0.94 0.00 0.00 20.84 11.04 22.62 11.55 7.47 0.00 14.10 115.27 34.87 45.40 26 E6_Da NovelBoundary 0 6.82 0.00 16.23 6.46 0.00 8.12 0.00 16.43 3.41 9.00 0.00 0.00 0.00 5.42 4.45 0.00 3.93 2.20 0.00 6.33 10.93 0.00 18.44 27 E6a_E7a KnownJunction 0 3.41 6.31 40.65 29.77 7.22 24.36 3.80 18.57 13.60 29.23 2.47 0.00 0.00 29.08 10.14 35.20 21.88 5.76 0.00 5.88 99.03 33.25 35.34 28 E7_Aa NovelBoundary 0 3.56 3.35 8.99 13.12 0.00 21.52 6.54 8.38 4.66 12.68 0.00 0.00 0.00 7.18 9.64 0.00 4.77 18.65 0.00 2.75 8.53 6.25 20.23 29 ER7a ExonRegion 0 6.03 12.11 45.32 31.45 8.39 37.84 5.16 15.37 19.33 25.42 0.47 0.00 0.00 30.29 9.50 20.26 22.91 7.56 7.96 13.31 127.58 54.52 45.47 30 E7_Da NovelBoundary 0 2.89 0.00 15.82 22.11 3.90 31.74 7.68 21.03 9.26 13.73 5.11 0.00 0.00 7.36 4.45 10.51 4.30 4.85 0.00 0.00 27.49 0.00 10.93 31 E7a_E8a KnownJunction 0 10.45 11.38 31.13 34.43 0.00 36.17 1.90 16.76 25.00 16.90 0.00 0.00 0.00 24.55 4.45 11.96 20.10 7.42 4.05 12.46 96.19 49.23 43.54 32 E7a_E9a NovelJunction 0 0.00 0.00 4.49 3.03 0.00 10.90 2.25 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.08 3.12 0.00 33 E8_Aa NovelBoundary 0 20.23 3.35 25.28 16.25 4.33 20.67 5.83 15.57 6.37 11.58 0.00 0.00 0.00 11.65 9.64 0.00 9.26 16.58 0.00 6.01 31.88 2.76 32.01 34 ER8a ExonRegion 0 7.61 11.02 34.68 21.62 3.67 50.65 10.65 21.49 19.65 16.40 1.30 0.00 3.13 20.83 12.54 13.04 11.20 16.62 2.98 12.72 100.29 46.66 29.65 35 E8_Da NovelBoundary 0 3.78 2.70 14.75 1.96 0.00 16.69 10.64 6.00 2.81 8.41 0.00 0.00 0.00 4.77 8.90 0.00 4.30 2.57 0.00 3.26 9.08 0.00 11.35 36 E8a_E9a KnownJunction 0 6.82 2.70 28.74 20.98 0.00 37.19 6.23 18.65 23.90 16.01 2.68 0.00 0.00 28.43 4.70 15.89 12.06 8.87 13.65 5.75 73.02 67.05 33.38 37 I8 Intron 0 1.00 1.92 0.86 3.84 2.53 18.19 1.88 3.65 0.87 0.81 1.83 0.00 0.00 0.63 4.43 7.02 3.12 2.17 0.00 3.01 7.28 3.94 8.32 38 I8_AR1 ActiveIntronRegion 0 1.02 1.96 0.88 3.88 2.57 18.51 1.91 3.70 0.89 0.82 1.86 0.00 0.00 0.64 4.52 7.15 3.18 2.21 0.00 3.05 7.42 3.99 8.48 39 E9_Aa NovelBoundary 0 12.74 9.34 23.74 21.21 0.00 38.27 8.57 22.06 9.66 17.76 0.00 0.00 0.00 0.00 5.19 0.00 0.00 13.76 0.00 9.72 14.27 11.08 19.72 40 ER9a ExonRegion 0 11.10 14.50 32.32 35.01 11.58 54.80 15.06 21.79 23.24 27.17 2.03 0.00 0.00 22.82 18.74 8.09 22.62 19.78 3.45 18.70 114.12 57.72 60.95 41 E9_Da KnownBoundary 1 21.26 24.01 43.70 55.77 16.72 67.18 15.94 29.24 33.07 39.11 5.26 0.00 0.00 27.19 30.16 7.01 44.32 26.24 4.14 32.66 162.66 54.38 65.90 42 E9a_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER9b ExonRegion 0 12.89 19.72 51.73 46.01 9.49 68.96 17.77 27.45 27.43 35.28 3.75 0.00 1.71 26.18 21.54 20.26 20.81 35.11 10.33 26.76 149.32 46.41 61.85 44 E9b_E10a KnownJunction 1 13.34 14.73 62.42 48.84 4.33 87.73 19.34 40.91 20.89 36.24 0.00 0.00 6.82 21.84 15.20 43.24 8.23 35.36 18.73 18.73 130.54 42.86 63.85 45 ER10a ExonRegion 0 13.86 16.39 63.88 47.20 5.85 67.62 17.72 30.84 21.71 40.97 0.42 0.00 4.73 23.12 22.22 29.70 12.54 24.97 12.00 26.04 117.96 60.50 44.30 46 E10a_E11a KnownJunction 0 11.93 15.26 66.64 52.11 11.80 102.21 21.29 36.23 22.11 31.29 2.68 0.00 6.82 24.43 30.04 16.75 0.00 31.50 23.15 12.21 149.81 73.79 85.36 47 ER11a ExonRegion 0 10.31 14.32 53.19 48.22 5.29 76.86 11.18 41.48 23.60 36.68 0.95 0.00 2.99 27.44 17.90 19.41 3.58 29.21 23.04 17.65 140.71 72.83 80.73 48 E11_Da NovelBoundary 0 3.63 3.35 9.37 5.56 0.00 0.00 4.42 13.55 5.09 5.83 2.68 0.00 0.00 9.54 0.00 3.16 0.00 6.30 0.00 3.13 8.71 8.33 8.71 49 E11a_E12a KnownJunction 0 10.37 2.63 46.89 54.84 7.64 77.34 9.54 50.85 27.81 37.61 0.00 0.00 0.00 23.84 4.45 20.59 9.54 30.72 18.07 37.01 110.52 81.07 110.72 50 E12_Aa NovelBoundary 0 10.15 2.96 12.24 12.69 4.33 8.23 8.61 2.51 1.30 5.61 0.00 0.00 0.00 4.71 11.50 0.00 0.00 2.53 0.00 2.49 11.18 2.39 4.35 51 E12_Ab NovelBoundary 1 10.08 6.51 56.00 59.93 11.46 105.34 18.15 35.61 24.39 32.64 0.00 0.00 13.64 18.01 6.06 55.20 8.32 40.33 7.81 28.83 104.34 87.81 80.07 52 ER12a ExonRegion 0 10.58 6.30 49.81 56.83 9.63 82.80 13.84 43.12 27.91 36.93 0.00 0.00 7.97 21.52 8.12 42.65 13.86 35.11 13.86 32.23 117.57 96.15 99.26 53 ER12b ExonRegion 0 12.72 19.63 70.98 52.94 11.88 78.84 17.41 40.48 26.41 41.50 0.00 0.00 9.31 22.69 26.59 28.83 18.30 28.50 10.76 19.30 118.12 59.96 62.83 54 E12a_E13a KnownJunction 0 22.97 20.98 71.29 29.77 3.90 43.21 14.09 31.79 26.94 46.79 0.00 0.00 6.49 21.60 13.35 15.47 25.06 19.73 26.45 22.82 126.15 78.44 77.51 55 E13_Aa NovelBoundary 0 0.00 0.00 14.58 5.96 7.39 4.66 1.90 6.49 3.24 6.18 0.00 0.00 0.00 2.47 9.02 4.36 0.00 16.79 0.00 3.26 24.46 3.12 0.00 56 ER13a ExonRegion 0 25.17 13.27 59.09 41.00 6.44 70.42 13.91 38.56 21.74 35.27 2.17 0.00 2.45 20.49 23.74 17.08 11.50 26.11 11.79 15.86 102.08 56.15 53.71 57 E13a_E14a KnownJunction 0 14.00 8.55 34.03 29.87 11.63 62.92 19.96 33.56 19.56 18.40 2.68 0.00 0.00 2.41 18.05 4.36 9.35 17.95 0.00 6.26 75.49 49.66 29.62 58 ER14a ExonRegion 0 31.81 14.61 55.34 44.12 12.67 55.94 11.94 37.79 30.36 30.56 3.23 0.76 2.26 24.26 24.69 24.00 19.11 18.76 3.52 18.69 134.38 58.16 49.25 59 E14_Ab KnownBoundary 0 58.60 35.13 67.56 63.79 0.00 115.10 30.21 63.05 34.29 27.02 4.95 0.00 6.66 14.60 48.33 30.68 30.01 28.64 11.67 20.33 159.82 82.48 63.77 60 ER14b ExonRegion 0 37.31 29.86 63.54 53.62 3.59 91.27 20.01 49.78 36.31 27.49 2.98 0.00 5.90 26.31 46.34 26.75 42.82 21.01 7.55 24.74 176.23 66.73 49.08 61 E14a_E15a KnownJunction 0 41.79 26.57 70.87 60.33 3.90 87.00 20.49 49.74 40.13 30.65 2.63 0.00 0.00 29.49 26.21 33.07 43.10 14.43 0.00 24.48 169.70 59.89 39.27 62 E15_Aa NovelBoundary 0 13.56 0.00 9.22 5.96 0.00 30.04 0.00 8.38 5.27 3.33 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.11 0.00 0.00 5.31 0.00 3.93 63 ER15a ExonRegion 0 25.13 14.45 51.76 56.66 11.90 67.85 14.46 49.41 28.24 37.08 2.73 1.68 5.71 22.56 28.26 24.48 18.16 16.38 7.51 18.25 114.46 53.42 57.61 64 ER15b ExonRegion 0 0.85 2.24 0.00 2.45 0.00 1.83 0.00 0.00 0.25 1.38 0.00 0.00 0.00 0.97 1.16 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.17 65 IG21 Intergenic 0 11.18 7.92 9.85 3.94 7.53 8.19 6.20 9.59 18.10 9.79 2.33 3.64 3.13 4.01 8.57 9.89 6.95 9.24 13.17 5.88 7.77 4.58 11.41 66 IG21_AR3 ActiveIntergenicRegion 0 12.30 13.45 11.78 7.68 3.77 19.07 7.11 9.01 21.82 16.30 2.30 4.30 6.54 7.03 7.08 9.88 12.19 14.23 16.65 10.32 18.91 5.76 16.05 67 IG21_SR3 SilentIntergenicRegion 0 16.96 16.28 23.26 7.45 11.34 17.03 11.92 21.49 39.14 21.60 5.18 5.67 4.58 8.61 14.83 21.15 13.62 23.98 27.37 14.61 15.49 9.31 22.80 68 IG21_AR4 ActiveIntergenicRegion 0 12.37 29.10 30.59 5.29 14.20 13.19 16.24 24.46 36.53 22.01 5.13 0.00 4.15 15.43 29.91 19.43 25.39 27.15 43.86 8.18 14.07 9.94 29.71 69 IG21_AR5 ActiveIntergenicRegion 0 26.39 20.06 34.11 11.34 26.92 18.22 17.86 32.37 49.49 35.05 4.57 14.04 14.25 12.14 30.15 34.17 15.23 23.60 41.91 13.20 15.05 7.78 36.57 70 IG21_SR5 SilentIntergenicRegion 0 23.32 11.96 11.01 4.47 14.50 9.51 8.17 12.13 23.48 11.53 2.41 6.16 4.33 4.34 10.51 12.57 10.49 9.97 15.74 5.99 11.61 7.32 15.16 71 IG21_AR8 ActiveIntergenicRegion 0 27.81 14.85 14.84 7.25 11.17 11.52 12.50 11.53 35.07 16.96 5.24 8.70 3.81 9.24 18.52 17.93 17.33 16.72 18.74 10.75 14.49 8.20 24.26 72 IG21_SR6 SilentIntergenicRegion 0 15.88 6.24 6.85 4.85 5.93 7.19 4.06 6.59 16.64 4.08 3.63 7.82 7.15 4.61 13.91 17.24 8.45 6.89 22.83 4.35 7.89 4.26 15.53