Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC3A2 Gene 0 151.38 137.96 361.46 387.62 102.13 122.93 86.61 144.88 172.81 224.06 415.73 179.61 235.73 322.76 382.40 352.04 295.19 409.56 291.21 189.64 303.99 438.21 399.38 2 377892 Transcript 0 0.00 2.50 12.45 1.83 7.47 2.90 3.58 0.00 0.00 1.67 17.43 0.00 5.68 14.36 23.61 21.02 0.00 14.26 3.86 17.64 5.50 0.00 0.00 3 377889 Transcript 0 0.00 0.00 23.83 9.22 3.82 5.45 0.00 6.65 2.98 1.40 5.11 0.00 0.00 20.07 4.45 15.47 11.31 47.84 22.59 9.20 0.00 3.06 0.00 4 377891 Transcript 0 2.55 7.17 40.54 11.03 7.79 3.56 12.45 6.12 3.82 6.53 39.75 8.79 14.14 31.87 22.37 58.77 29.93 65.89 39.99 47.20 2.69 1.63 7.44 5 377890 Transcript 0 19.93 41.51 65.11 26.74 12.14 19.14 36.61 22.55 5.73 47.92 54.70 26.11 54.54 96.18 84.68 23.67 37.68 117.31 74.83 81.37 17.42 7.90 0.00 6 338663 Transcript 1 38.74 25.33 86.46 93.11 21.41 53.84 26.92 38.72 54.15 56.33 151.41 21.99 66.35 102.43 95.49 160.31 104.55 172.37 136.88 43.95 177.67 109.05 283.98 7 422606 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 IG23_AR1 ActiveIntergenicRegion 0 7.05 22.86 12.16 9.72 6.13 9.50 11.09 10.19 9.96 6.76 55.12 1.48 1.61 13.94 6.61 11.14 24.05 19.51 15.25 10.19 9.17 0.43 6.72 9 ER1a ExonRegion 0 4.98 3.07 0.92 1.29 5.21 7.43 3.44 0.00 1.86 2.09 9.12 0.00 0.00 9.94 14.91 8.92 10.71 7.39 4.14 9.85 1.59 1.17 3.04 10 E1_Ab KnownBoundary 0 6.59 8.55 5.56 1.73 15.45 25.04 9.19 0.00 6.13 7.82 23.01 0.00 0.00 12.07 34.12 19.99 20.10 34.66 8.19 26.01 2.97 5.27 3.24 11 ER1b ExonRegion 0 6.72 21.99 68.06 32.25 11.66 16.85 29.07 14.17 14.33 42.13 73.25 8.67 8.93 90.55 99.39 91.46 81.37 113.51 79.91 126.85 14.26 9.53 7.05 12 E1a_E2a KnownJunction 1 0.00 11.12 3.49 23.47 12.90 7.95 0.00 0.00 0.00 30.89 51.22 11.10 13.64 80.58 85.30 61.61 8.79 224.22 65.13 80.60 14.46 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 6.12 82.29 26.97 4.33 0.00 9.10 9.90 11.14 10.83 28.27 5.70 0.00 36.79 50.44 135.78 56.66 149.61 59.58 78.49 5.87 2.82 8.28 14 E1a_E5b KnownJunction 0 0.00 0.00 23.83 9.22 3.82 5.45 0.00 6.65 2.98 1.40 5.11 0.00 0.00 20.07 4.45 15.47 11.31 47.84 22.59 9.20 0.00 3.06 0.00 15 I1_AR1 ActiveIntronRegion 0 2.76 16.81 20.61 17.65 10.12 3.26 26.05 11.14 2.13 10.03 1.95 6.09 3.10 1.65 10.98 12.89 7.04 9.87 3.63 23.80 0.00 0.37 0.52 16 E2_Aa NovelBoundary 0 33.04 17.63 48.82 34.69 14.77 29.02 59.18 31.67 35.73 31.75 11.48 12.75 5.84 19.19 15.58 15.55 4.21 43.98 26.45 22.43 25.21 7.84 21.77 17 ER2a ExonRegion 0 4.03 15.74 2.25 26.98 32.08 21.43 16.29 2.86 0.03 31.85 75.45 24.25 25.11 72.00 76.81 31.22 14.45 153.03 59.29 45.73 7.65 0.04 0.00 18 E2a_E3a KnownJunction 0 3.78 12.37 0.00 22.81 54.24 19.53 2.25 0.00 0.00 37.26 76.91 25.51 45.45 62.51 58.97 26.83 13.09 101.31 59.58 51.58 9.39 0.00 0.00 19 E3_Aa NovelBoundary 0 3.78 15.79 11.62 15.22 20.20 5.17 48.98 7.97 4.11 13.22 0.00 12.00 13.64 0.00 13.72 8.03 9.35 4.39 7.72 5.50 0.00 0.00 0.00 20 ER3a ExonRegion 0 12.59 40.39 81.16 48.92 37.17 29.38 31.87 27.36 16.68 53.86 137.46 35.43 54.31 133.77 114.30 77.12 80.14 177.66 84.63 121.32 30.73 7.06 5.12 21 E3a_E4a KnownJunction 0 2.89 6.25 19.43 0.00 4.33 4.71 12.37 1.56 0.00 3.33 42.17 12.00 14.28 24.72 0.00 12.30 15.80 23.59 21.37 23.20 0.00 0.00 7.43 22 E3a_E4b KnownJunction 0 0.00 2.50 12.45 1.83 7.47 2.90 3.58 0.00 0.00 1.67 17.43 0.00 5.68 14.36 23.61 21.02 0.00 14.26 3.86 17.64 5.50 0.00 0.00 23 E3a_E5b KnownJunction 0 19.93 41.51 65.11 26.74 12.14 19.14 36.61 22.55 5.73 47.92 54.70 26.11 54.54 96.18 84.68 23.67 37.68 117.31 74.83 81.37 17.42 7.90 0.00 24 E4_Aa NovelBoundary 0 237.08 282.91 276.81 316.71 181.66 144.01 295.32 391.02 302.63 242.78 138.51 46.97 21.59 28.43 59.71 210.97 250.12 395.71 198.31 249.09 129.11 85.79 221.26 25 E4_Ab NovelBoundary 0 127.87 222.79 230.09 294.14 240.83 161.90 264.14 361.21 273.35 281.81 69.86 60.32 37.66 16.95 53.53 180.29 117.53 369.39 103.25 197.57 93.22 65.46 197.27 26 ER4a ExonRegion 0 4.76 9.15 19.91 6.13 14.72 5.96 15.89 6.91 0.31 5.45 48.81 8.66 28.14 34.11 16.68 28.24 17.33 24.48 39.02 39.89 2.20 2.08 6.61 27 ER4b ExonRegion 0 9.92 19.27 33.10 18.04 16.14 2.87 18.02 9.19 1.49 21.88 50.26 16.52 25.29 56.35 49.89 48.36 43.52 47.26 32.58 53.93 5.68 2.17 5.46 28 E4a_E5b KnownJunction 0 2.82 5.26 18.27 11.69 4.33 4.66 7.77 5.59 1.68 9.08 41.80 36.46 13.47 66.10 52.04 24.95 46.84 65.58 4.71 28.76 2.35 5.02 0.00 29 ER5a ExonRegion 1 38.74 25.33 86.46 93.11 21.41 53.84 26.92 38.72 54.15 56.33 151.41 21.99 66.35 102.43 95.49 160.31 104.55 172.37 136.88 43.95 177.67 109.05 283.98 30 E5_Ab KnownBoundary 0 2.82 3.09 34.80 41.22 6.54 18.68 8.48 27.15 54.34 42.20 23.48 31.21 77.27 6.95 9.77 3.59 25.90 36.48 22.68 4.92 41.39 17.70 26.38 31 E5_Ac KnownBoundary 1 18.82 12.83 63.27 31.50 10.70 16.30 22.96 24.81 19.94 52.81 93.55 57.47 179.05 77.58 27.69 61.27 33.85 100.69 23.06 73.63 57.21 14.76 4.35 32 ER5b ExonRegion 1 33.44 52.47 160.77 98.95 29.97 45.48 52.43 67.06 69.91 118.36 209.53 165.39 297.35 200.09 148.54 121.86 146.56 256.47 148.44 147.66 147.21 40.00 64.61 33 ER5c ExonRegion 0 26.85 51.71 228.47 149.92 32.15 60.37 36.93 67.37 95.36 151.59 308.78 78.64 134.25 276.28 278.50 238.04 261.77 289.56 214.08 170.53 304.37 240.21 310.39 34 E5_Da KnownBoundary 0 19.04 65.58 237.87 185.26 66.21 221.18 109.39 74.02 98.00 145.62 288.92 88.23 129.05 265.70 252.18 162.35 208.51 370.63 135.06 156.60 270.34 281.49 216.99 35 E5a_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5d ExonRegion 1 16.49 77.74 180.49 127.69 27.59 123.48 78.53 49.30 79.46 143.03 250.95 42.48 88.62 214.11 244.31 132.94 211.74 239.40 134.78 127.26 238.87 218.16 179.50 37 E5_Ad KnownBoundary 1 27.26 151.68 222.46 180.36 40.32 80.52 63.06 69.91 107.90 185.56 242.54 23.56 122.23 249.22 270.60 214.30 232.16 273.92 218.74 166.70 230.80 200.36 258.91 38 ER5e ExonRegion 1 57.54 97.00 238.71 184.60 29.76 59.97 47.40 76.80 122.93 173.57 239.87 50.79 141.89 340.82 313.60 260.11 243.12 283.98 265.10 201.52 215.86 360.14 331.39 39 E5b_E6a KnownJunction 0 101.80 134.71 214.39 261.27 60.44 97.67 83.78 95.91 118.92 232.95 238.01 74.12 143.17 355.35 310.77 388.62 311.64 435.30 246.60 202.75 290.29 503.28 407.86 40 ER6a ExonRegion 0 158.25 183.23 421.77 450.80 146.66 188.72 126.52 190.35 241.86 310.28 587.81 266.86 359.06 506.57 448.56 516.88 488.49 661.63 457.74 275.90 448.00 611.73 638.52 41 E6a_E7a KnownJunction 0 282.12 300.14 545.19 587.57 168.08 256.78 176.83 223.32 290.33 401.51 796.20 327.26 514.41 598.33 629.95 614.03 601.78 683.36 710.23 278.23 565.26 886.11 809.84 42 I6 Intron 0 16.43 14.76 17.09 28.13 25.81 16.69 24.08 15.99 13.89 14.38 16.43 26.83 20.05 19.44 12.60 18.73 16.71 17.81 18.86 15.26 24.83 24.29 23.00 43 I6_AR1 ActiveIntronRegion 0 16.49 14.82 17.15 28.23 25.91 16.75 24.17 16.05 13.94 14.43 16.49 26.93 20.13 19.51 12.65 18.80 16.77 17.88 18.93 15.32 24.92 24.38 23.08 44 ER7a ExonRegion 0 219.63 227.87 598.99 674.94 164.62 223.32 138.37 262.76 310.43 387.87 785.91 407.06 503.62 557.44 571.64 695.74 557.89 753.36 565.92 307.75 574.74 846.88 799.21 45 E7a_E8a KnownJunction 0 194.48 224.04 710.74 674.17 115.11 213.34 103.56 235.40 266.92 384.53 724.92 546.78 613.43 452.65 486.19 502.86 433.10 730.57 386.18 225.50 493.35 769.71 621.02 46 I7 Intron 0 19.05 19.62 26.72 48.99 25.92 15.80 23.42 31.57 30.62 25.72 34.56 26.38 24.39 29.30 25.92 31.07 28.07 24.20 33.06 19.64 34.33 32.41 36.66 47 I7_AR1 ActiveIntronRegion 0 19.08 19.65 26.76 49.06 25.96 15.82 23.46 31.62 30.66 25.76 34.61 26.42 24.42 29.34 25.95 31.11 28.11 24.24 33.11 19.67 34.38 32.46 36.72 48 E8_Aa NovelBoundary 0 47.86 19.14 35.07 42.82 40.49 18.63 22.43 31.01 21.76 13.59 38.48 18.31 0.00 22.01 23.86 27.94 25.99 25.49 4.14 25.50 47.01 20.76 13.06 49 ER8a ExonRegion 0 197.20 219.45 640.19 725.94 210.57 283.71 139.59 256.59 301.98 364.55 812.83 422.41 535.96 576.00 605.27 634.14 550.10 808.64 476.65 276.90 611.16 854.67 753.82 50 E8a_E9a KnownJunction 0 284.20 340.07 787.67 980.10 315.62 390.51 217.46 347.65 344.50 412.30 1029.42 571.99 764.72 691.92 765.07 702.89 692.57 873.42 799.08 345.66 660.34 1201.40 1055.60 51 ER9a ExonRegion 0 325.73 311.41 836.99 993.52 328.75 313.18 223.37 336.78 392.62 460.88 1026.86 511.54 609.15 682.38 708.10 824.08 622.02 1075.52 710.34 342.30 585.03 1069.02 945.55 52 E9a_E10a KnownJunction 0 514.98 392.76 1000.11 1116.74 268.17 314.53 238.04 336.40 438.48 499.36 986.72 448.50 485.03 632.47 803.64 1108.94 647.12 1148.67 755.13 377.62 595.10 1200.61 975.02 53 ER10a ExonRegion 0 388.16 348.56 919.93 1070.53 298.84 310.02 223.94 332.88 418.12 471.44 959.89 629.40 737.48 618.84 695.74 804.86 593.19 902.44 664.03 347.40 601.44 1122.82 924.46 54 E10a_E11a KnownJunction 0 738.13 464.72 1066.91 1241.73 326.23 417.54 235.83 359.19 446.03 500.68 858.06 695.03 515.06 562.19 704.50 1021.53 547.45 1127.82 809.34 393.92 488.41 1305.80 955.64 55 ER11a ExonRegion 0 352.86 305.70 690.11 885.40 211.37 280.34 165.81 297.14 358.87 444.21 755.84 487.19 438.29 578.67 697.43 665.84 471.34 752.27 526.56 306.88 547.97 919.60 729.06 56 E11a_E12a KnownJunction 0 304.65 273.77 632.18 797.70 94.99 149.01 181.07 271.46 360.85 412.63 500.71 246.08 324.33 296.25 598.43 402.46 388.59 453.38 320.39 290.76 410.57 858.74 453.28 57 ER12a ExonRegion 0 400.30 295.57 534.39 697.26 179.40 187.07 165.76 280.69 295.93 383.41 619.33 282.55 354.32 519.83 677.89 531.80 447.39 570.89 357.71 288.60 510.11 743.10 533.80 58 E12a_E13a KnownJunction 0 752.13 337.90 525.50 770.60 247.88 212.66 190.92 277.46 274.27 354.12 646.85 263.94 275.47 523.28 626.25 600.78 495.18 772.57 322.46 273.89 453.63 603.39 599.33 59 I12 Intron 0 20.24 9.26 11.65 8.35 23.15 3.34 7.84 5.86 5.03 4.68 14.10 6.49 3.52 13.22 14.92 12.18 12.02 11.30 8.73 4.84 29.12 17.08 28.08 60 I12_AR1 ActiveIntronRegion 0 20.61 9.41 11.86 8.50 23.57 3.38 7.97 5.97 5.12 4.76 14.36 6.61 3.58 13.47 15.19 12.40 12.24 11.49 8.89 4.93 29.65 17.39 28.57 61 E13_Aa NovelBoundary 0 97.13 38.15 59.40 47.41 25.55 15.84 10.16 13.39 11.02 25.04 25.16 12.15 6.82 19.01 46.23 43.75 38.52 22.05 21.08 14.57 51.52 63.74 60.52 62 ER13a ExonRegion 0 354.66 257.44 558.75 681.59 159.82 197.64 157.85 266.52 294.46 382.22 606.95 198.57 289.74 463.34 728.43 536.38 419.78 721.42 315.51 277.02 453.61 619.86 594.47 63 E13_Da KnownBoundary 0 327.54 269.49 699.35 732.77 166.89 244.69 151.70 277.00 332.00 411.55 744.61 211.87 284.40 495.21 926.76 619.15 491.82 711.55 373.38 374.11 557.11 868.29 705.10 64 E13a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER13b ExonRegion 0 265.57 245.95 586.05 623.63 131.50 167.82 129.69 256.73 282.22 380.61 602.74 198.39 283.78 466.31 771.48 503.78 409.20 515.86 391.05 250.36 466.40 724.56 604.40 66 E13_Ab KnownBoundary 1 195.52 110.57 698.97 703.61 77.59 167.01 149.27 273.39 290.19 395.03 490.91 82.08 209.89 311.32 751.72 407.84 366.71 394.14 287.26 171.94 377.03 747.17 407.01 67 ER13c ExonRegion 0 188.03 118.18 511.40 492.38 90.61 86.89 59.13 205.53 225.93 284.58 473.68 105.95 197.33 320.05 519.23 343.50 334.59 330.15 290.98 185.34 353.17 540.38 384.53 68 E13_Db KnownBoundary 0 111.95 64.73 328.02 366.65 101.70 44.69 45.49 130.12 142.50 187.44 166.62 95.28 216.71 108.25 193.71 119.28 90.04 210.25 154.36 63.98 108.05 208.50 134.19 69 ER13d ExonRegion 0 320.86 166.32 215.76 244.71 149.06 110.51 93.92 68.90 84.42 116.26 210.54 88.92 197.99 142.35 265.00 251.17 140.92 184.12 230.82 77.58 125.37 221.97 278.35 70 ER13e ExonRegion 0 14.53 22.37 18.16 25.46 14.11 6.84 6.62 4.32 5.39 9.70 16.87 4.92 14.28 12.92 16.88 29.86 18.00 16.88 16.36 4.64 8.92 20.27 26.70