Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TTC9C Gene 0 87.17 67.29 61.04 65.35 69.77 69.52 53.37 77.93 47.99 98.12 167.36 56.27 86.44 133.95 140.46 137.15 127.26 67.27 58.66 46.07 81.96 44.77 54.38 2 294161 Transcript 0 5.40 5.19 10.38 13.75 7.39 8.42 3.99 7.07 5.79 8.09 18.62 6.97 2.44 22.98 38.35 24.00 10.32 17.29 6.47 9.73 3.28 5.72 15.05 3 316461 Transcript 0 96.14 81.71 87.21 83.24 93.55 83.04 54.85 94.74 62.91 143.56 223.92 87.98 130.06 182.86 209.18 172.19 179.63 80.36 73.92 50.64 118.11 58.03 65.04 4 IG6 Intergenic 0 0.88 1.55 2.41 1.41 3.72 7.13 4.69 3.04 4.47 9.37 29.10 1.24 4.00 34.55 15.52 31.55 25.42 20.97 19.67 14.76 20.80 5.78 17.93 5 IG6_AR1 ActiveIntergenicRegion 0 3.54 4.22 9.93 6.52 11.10 22.28 12.69 11.84 20.44 41.49 160.27 3.02 23.80 196.57 85.40 155.48 138.31 84.81 92.06 65.82 112.06 25.50 97.27 6 ER1a ExonRegion 0 1.54 3.28 2.64 1.55 6.04 4.18 2.38 3.75 1.08 3.63 5.65 2.46 0.51 4.77 5.02 10.27 3.19 8.76 3.59 5.59 3.10 0.86 0.84 7 E1_Ab KnownBoundary 0 13.11 5.92 2.78 2.03 7.05 8.69 0.00 2.55 2.66 2.87 10.00 0.00 0.00 2.24 0.00 3.93 0.00 15.84 3.58 2.94 2.41 0.00 0.00 8 ER1b ExonRegion 1 123.88 57.63 43.33 61.37 66.66 77.02 59.02 75.42 47.19 79.75 140.13 24.35 14.55 101.81 103.86 131.49 104.83 76.55 65.66 44.13 89.26 42.66 80.49 9 E1_Da KnownBoundary 1 10.52 27.30 57.95 74.52 25.98 33.62 21.46 121.37 66.38 114.00 77.18 17.86 18.67 78.64 111.75 207.72 70.78 124.40 108.99 54.20 89.33 78.69 96.12 10 E1a_E1c KnownJunction 0 13.85 12.30 28.03 39.69 16.13 20.39 9.58 17.46 16.29 20.36 49.96 18.46 6.82 64.16 110.02 61.35 27.77 43.11 15.81 22.82 6.18 16.29 44.30 11 ER1c ExonRegion 0 34.67 24.75 49.00 62.32 117.09 91.99 43.26 89.88 55.15 100.99 138.61 54.19 51.70 91.87 97.41 185.57 96.45 71.81 67.99 39.01 76.55 54.00 86.41 12 E1_Ac KnownBoundary 0 98.09 27.63 67.98 59.80 236.84 147.24 80.86 99.89 49.28 107.42 217.63 62.72 99.67 162.99 193.83 278.64 155.21 59.44 90.83 38.86 98.10 40.78 52.67 13 ER1d ExonRegion 0 137.82 92.72 100.26 97.74 79.52 111.69 80.52 130.29 73.51 160.82 337.86 77.82 129.43 227.33 261.81 274.94 240.69 137.53 94.59 76.63 166.49 74.48 86.87 14 E1_Db NovelBoundary 0 88.68 11.51 19.96 26.00 58.15 19.93 25.17 14.50 16.75 26.62 4.37 18.91 20.94 21.96 24.11 54.34 27.86 24.00 4.24 22.37 10.50 5.51 16.30 15 E1b_E3a KnownJunction 0 116.09 61.96 110.14 95.03 102.21 97.05 54.76 112.83 64.21 187.79 340.67 100.68 118.82 193.18 262.93 194.82 217.11 114.29 104.85 49.41 186.14 63.56 65.47 16 I1 Intron 0 9.93 3.58 2.14 3.57 20.39 8.60 10.85 1.51 0.00 2.00 1.13 8.81 11.32 6.16 12.01 24.39 7.74 4.86 5.60 13.72 2.58 1.22 8.61 17 I1_SR1 SilentIntronRegion 0 10.16 3.66 2.19 3.66 20.87 8.80 11.09 1.55 0.00 2.05 1.16 9.02 11.59 6.31 12.29 24.97 7.92 4.98 5.73 14.04 2.64 1.25 8.81 18 ER2a ExonRegion 0 0.79 0.00 0.46 0.00 0.00 0.69 0.00 0.00 0.00 0.29 0.24 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.80 0.55 0.00 0.00 19 I2_SR2 SilentIntronRegion 0 29.35 7.49 2.37 6.92 9.89 9.29 12.32 12.04 4.98 10.30 6.87 4.43 12.80 7.98 26.38 22.12 11.23 7.79 7.28 10.36 5.22 2.39 9.40 20 I2_AR1 ActiveIntronRegion 0 11.47 14.06 4.82 7.72 5.96 11.39 9.43 7.88 3.53 9.24 3.83 3.34 22.13 13.11 9.37 8.08 11.00 1.20 1.23 9.41 2.09 4.09 4.12 21 E3_Aa NovelBoundary 0 36.30 31.51 6.89 19.41 33.96 8.69 16.91 24.11 7.44 13.22 15.27 19.36 34.09 8.95 21.01 21.28 41.05 19.57 4.05 3.13 14.76 2.69 22.71 22 ER3a ExonRegion 0 101.77 81.54 90.54 79.66 84.16 88.58 70.32 92.88 66.82 143.65 241.11 94.80 173.86 260.88 245.24 189.47 230.92 100.78 78.55 63.41 139.06 49.94 74.91 23 E3_Da NovelBoundary 1 3.63 11.25 19.90 32.03 0.00 29.64 4.50 26.45 8.01 38.44 2.63 25.96 26.30 14.19 10.38 22.99 27.49 13.47 8.56 15.53 16.12 2.39 25.95 24 E3a_E4a KnownJunction 0 107.87 112.22 90.92 72.75 49.58 50.08 28.18 68.10 59.81 143.07 196.73 87.93 142.85 197.31 261.95 155.86 207.85 62.84 44.80 40.27 119.35 56.09 48.57 25 I3 Intron 0 38.69 48.65 29.56 45.52 42.28 21.93 21.89 30.81 21.74 31.83 8.46 17.27 23.96 21.27 24.59 19.80 18.78 10.77 14.87 23.48 8.46 10.13 10.71 26 I3_AR1 ActiveIntronRegion 0 21.34 25.33 13.72 35.73 29.09 20.30 18.58 34.62 21.10 23.65 6.88 15.10 21.49 30.08 25.47 18.21 18.91 11.08 10.07 18.09 5.66 11.53 6.37 27 I3_SR1 SilentIntronRegion 0 45.20 57.74 35.79 50.37 48.37 23.27 23.70 30.31 22.72 35.54 9.18 18.20 24.91 18.97 24.89 20.43 19.30 10.94 16.62 26.06 9.68 10.00 12.37 28 E4_Aa NovelBoundary 1 118.54 36.57 60.97 67.16 61.63 33.84 47.65 60.87 36.34 83.84 16.74 19.06 54.87 33.61 38.20 55.20 36.09 35.24 48.85 54.01 5.13 3.12 23.13 29 I3_AR2 ActiveIntronRegion 0 25.03 21.04 9.51 8.69 2.86 2.78 5.16 11.86 3.49 9.53 4.27 13.44 22.64 4.82 10.60 18.65 5.12 4.33 12.52 5.50 1.98 1.72 6.28 30 ER4a ExonRegion 0 120.31 128.09 95.46 106.43 114.72 87.48 77.73 110.00 68.56 142.28 202.46 102.32 163.08 171.05 178.38 135.21 145.82 52.10 73.40 61.11 69.46 66.55 49.82 31 IG7 Intergenic 0 15.14 14.70 7.45 12.17 20.11 9.77 10.15 11.14 8.23 12.83 3.95 6.22 9.13 8.16 9.73 6.94 5.27 4.91 7.63 7.66 3.04 3.75 4.30 32 IG7_AR1 ActiveIntergenicRegion 0 102.95 83.94 34.99 55.07 80.43 57.84 51.52 46.32 29.31 52.91 39.88 57.58 83.36 89.98 67.82 50.82 35.03 23.29 29.11 24.44 26.64 27.64 18.18 33 IG7_AR3 ActiveIntergenicRegion 0 96.51 72.13 19.77 22.08 52.03 22.38 21.55 27.50 15.56 30.81 17.58 18.70 20.07 30.23 41.73 18.63 24.66 4.40 35.18 15.99 7.16 18.95 11.80 34 IG7_AR5 ActiveIntergenicRegion 0 2.87 5.97 12.36 10.99 9.06 3.72 8.37 22.09 12.45 20.83 6.11 3.22 7.35 4.27 10.82 8.05 2.98 4.77 7.91 11.52 0.50 6.58 3.31 35 IG7_SR5 SilentIntergenicRegion 0 12.10 12.51 8.32 13.52 26.89 14.73 14.56 12.30 7.46 13.48 1.68 7.76 7.01 7.41 12.86 9.25 5.49 7.65 10.14 9.39 3.83 2.56 6.37