Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRPT1 Gene 0 61.45 21.15 64.54 46.76 39.59 52.41 20.72 57.10 38.66 90.61 73.20 30.11 33.61 112.64 186.45 94.40 104.18 62.24 64.33 49.53 89.24 85.64 102.76 2 394546 Transcript 0 10.13 9.34 20.15 21.56 17.36 23.38 5.03 20.64 20.20 41.42 18.91 26.15 4.69 49.75 52.63 20.64 32.29 12.14 16.80 20.31 22.95 22.16 20.84 3 317459 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394547 Transcript 0 6.82 1.70 4.23 3.20 2.23 7.19 1.69 1.25 0.58 5.55 5.97 1.97 0.00 7.02 7.89 4.80 2.64 6.63 1.31 0.00 7.82 4.36 13.19 5 ER1a ExonRegion 0 42.86 12.78 11.89 5.11 18.37 32.61 14.19 5.30 7.39 8.37 2.83 0.00 0.00 21.49 39.31 22.59 22.01 5.94 20.33 14.93 15.94 11.91 43.36 6 E1_Ab KnownBoundary 0 116.91 9.01 29.74 24.11 59.34 113.97 44.87 27.19 20.11 24.34 7.32 0.00 0.00 35.26 55.88 33.67 50.96 32.67 44.52 39.69 38.55 30.86 89.80 7 ER1b ExonRegion 1 86.69 21.05 24.35 12.02 32.16 81.66 19.48 21.36 13.17 29.85 35.28 0.48 4.92 38.31 75.46 52.67 63.71 46.56 41.51 32.17 56.57 31.21 89.51 8 E1a_E2a KnownJunction 0 33.64 3.09 14.58 9.09 4.24 24.59 2.21 10.56 6.19 15.82 19.48 6.30 13.47 5.00 22.00 14.70 11.78 10.36 0.00 16.04 49.55 5.82 28.51 9 E1a_E3a KnownJunction 0 9.41 3.35 5.50 3.83 3.57 7.67 0.00 1.77 0.00 5.16 11.69 0.00 0.00 6.83 5.07 8.29 4.77 13.27 0.00 0.00 13.78 8.57 20.57 10 ER2a ExonRegion 0 25.22 8.45 33.68 22.47 7.17 24.56 10.32 45.62 14.85 51.69 40.27 19.48 14.68 54.93 78.78 57.78 90.38 41.77 47.44 43.72 59.89 28.55 58.91 11 E2a_E3a KnownJunction 0 13.63 11.64 66.47 32.96 7.98 6.98 2.16 75.70 23.12 93.61 53.01 18.31 20.45 66.34 137.22 75.96 155.59 69.14 69.84 93.32 69.01 60.25 138.54 12 ER3a ExonRegion 0 22.61 10.24 60.22 27.41 16.25 16.08 11.40 67.45 30.28 71.88 75.90 35.90 18.93 91.94 157.27 111.78 108.20 97.48 47.94 61.70 96.05 67.36 109.95 13 E3_Da NovelBoundary 0 19.63 3.35 32.94 27.60 0.00 6.81 6.36 31.38 24.62 45.77 9.69 25.21 6.17 60.98 54.14 53.49 22.16 47.88 4.52 12.59 51.77 30.56 54.80 14 E3a_E4a KnownJunction 0 23.86 19.01 61.41 26.34 26.57 11.87 18.15 41.81 30.38 54.93 61.12 12.15 40.58 93.06 219.92 89.72 82.94 97.21 45.74 21.60 45.96 82.60 97.06 15 I3 Intron 0 32.85 4.27 12.15 15.88 14.68 20.54 10.04 19.54 15.25 32.11 20.30 13.40 8.05 38.89 56.27 43.01 30.43 19.08 10.41 13.66 23.40 25.05 40.78 16 I3_AR1 ActiveIntronRegion 1 33.00 4.29 12.20 15.95 14.74 20.63 10.09 19.62 15.32 32.26 20.40 13.47 8.09 39.07 56.51 43.21 30.57 19.17 10.45 13.72 23.51 25.16 40.97 17 E4_Aa NovelBoundary 0 59.42 11.91 32.88 24.74 3.99 59.91 18.55 37.34 24.57 35.00 45.59 35.41 0.00 74.46 41.66 53.32 35.16 33.20 18.26 17.51 43.55 53.52 64.11 18 ER4a ExonRegion 0 53.27 25.38 95.33 58.57 61.13 56.41 28.25 68.04 43.32 111.35 84.18 26.69 46.71 152.45 256.71 140.02 141.34 82.64 71.80 56.12 106.70 100.93 147.61 19 E4_Da NovelBoundary 0 25.04 12.63 6.39 15.42 14.60 21.81 13.20 27.36 9.17 34.11 9.16 5.40 0.00 24.60 32.02 7.52 12.62 26.94 0.00 11.38 13.59 5.08 7.68 20 E4a_E5a KnownJunction 0 75.79 20.19 110.91 76.11 85.48 70.81 44.43 74.02 70.11 135.76 118.14 48.92 34.09 194.72 350.08 149.53 181.11 96.25 63.34 67.24 151.97 130.79 137.01 21 I4 Intron 0 7.80 1.25 2.24 1.25 3.29 9.01 4.07 1.58 1.13 1.05 8.31 4.07 4.75 18.20 9.33 14.61 0.00 4.52 13.70 3.92 1.35 1.28 7.22 22 I4_AR1 ActiveIntronRegion 0 9.91 0.55 2.09 1.20 4.50 6.89 4.20 1.48 1.20 1.09 8.86 5.81 6.06 16.60 14.58 17.04 0.00 5.18 13.98 2.13 0.91 0.76 5.59 23 I4_SR1 SilentIntronRegion 0 6.03 2.03 2.45 1.36 2.21 11.64 4.14 1.73 1.11 1.06 8.17 2.49 3.63 20.75 4.42 12.85 0.00 4.02 14.10 5.90 1.87 1.88 9.25 24 E5_Aa NovelBoundary 0 27.49 2.76 31.08 22.24 11.71 26.52 21.86 56.19 14.12 43.17 12.00 0.00 12.99 24.13 53.65 21.19 17.02 26.70 29.84 20.01 16.93 16.72 35.94 25 ER5a ExonRegion 0 126.08 31.94 124.64 101.36 63.70 94.45 35.10 108.71 72.65 180.04 128.27 54.50 55.05 209.43 360.19 180.88 184.15 111.42 106.72 84.49 149.49 160.47 158.44 26 E5_Da NovelBoundary 0 211.52 3.03 17.53 27.47 12.31 29.19 23.85 57.54 32.09 45.15 44.01 18.76 20.13 35.08 83.32 67.59 47.69 47.84 53.37 20.71 34.72 48.25 100.13 27 E5a_E6a KnownJunction 0 53.71 36.64 107.60 73.85 38.20 81.77 33.30 94.35 77.26 156.20 108.34 54.92 26.78 168.99 193.46 85.70 138.20 86.22 87.53 83.54 161.73 129.02 121.39 28 I5 Intron 0 19.87 7.22 12.05 9.79 9.50 14.42 8.73 16.34 4.20 12.14 11.28 11.07 14.84 23.27 37.24 14.33 9.21 10.49 8.08 9.18 17.32 13.22 16.39 29 I5_AR1 ActiveIntronRegion 0 20.06 7.30 12.17 9.89 9.60 14.57 8.82 16.50 4.25 12.26 11.39 11.18 14.99 23.50 37.60 14.46 9.31 10.59 8.16 9.27 17.50 13.35 16.56 30 E6_Aa NovelBoundary 0 14.82 3.03 22.35 19.91 16.38 21.46 27.20 22.18 7.81 28.50 23.11 26.56 13.64 15.01 42.15 39.90 18.51 13.68 13.08 6.14 15.14 26.58 38.24 31 ER6a ExonRegion 0 43.63 24.08 78.66 72.42 49.20 52.63 20.90 73.99 67.43 134.47 122.48 42.76 46.24 177.14 274.96 96.67 132.44 67.65 93.21 72.00 146.33 116.31 124.27 32 E6_Da NovelBoundary 0 14.15 5.20 31.46 16.48 12.73 16.13 19.78 51.84 18.20 45.37 15.16 0.00 6.82 31.55 61.07 38.20 13.18 14.96 14.02 3.00 17.36 3.12 26.80 33 E6a_E7a KnownJunction 0 7.56 9.54 15.49 17.91 6.62 24.30 4.11 13.18 14.47 35.81 7.37 18.76 0.00 25.60 20.40 7.09 20.01 8.58 4.14 11.89 11.18 8.39 7.17 34 E6a_E7b KnownJunction 0 44.30 19.08 49.44 73.32 34.89 32.37 12.37 54.22 54.22 120.40 88.13 40.96 46.59 173.41 191.24 79.04 107.81 43.77 81.70 73.31 96.43 98.03 117.46 35 E6a_E8a NovelJunction 0 0.00 2.57 29.74 1.80 0.00 0.00 1.77 0.00 0.00 4.97 0.00 0.00 0.00 4.47 4.45 11.79 4.68 0.00 0.00 0.00 3.15 0.00 0.00 36 E7_Aa NovelBoundary 0 20.15 0.00 14.67 6.89 22.75 5.56 6.58 16.14 5.96 14.21 7.53 17.71 0.00 4.71 11.25 17.43 8.23 1.78 8.47 5.05 0.00 2.51 4.35 37 E7_Ab NovelBoundary 0 0.00 3.35 3.05 4.13 10.19 22.03 0.00 2.14 5.32 8.35 2.32 12.45 0.00 4.71 0.00 11.11 4.49 1.95 0.00 11.63 0.00 5.57 7.68 38 ER7a ExonRegion 0 12.70 9.15 24.81 25.21 28.10 22.46 5.96 28.09 25.94 47.02 30.44 33.55 9.38 73.90 84.86 34.18 44.56 15.71 29.46 28.72 34.71 35.94 34.51 39 ER7b ExonRegion 0 52.57 20.76 67.16 56.04 53.30 36.54 16.18 75.72 64.04 122.15 101.55 36.72 34.02 137.15 210.00 63.55 91.76 56.09 86.29 57.00 112.75 158.29 112.05 40 E7_Da NovelBoundary 0 25.56 3.35 28.71 22.14 10.70 8.18 13.82 28.67 21.79 32.85 4.11 13.50 6.82 17.07 23.98 32.81 12.90 7.25 0.00 11.12 2.78 5.76 12.89 41 E7a_E8a KnownJunction 0 58.60 2.70 44.41 29.27 31.41 50.37 9.94 43.46 40.16 62.48 64.65 62.57 59.90 89.06 146.12 27.51 16.46 40.54 61.27 48.13 47.69 87.32 43.88 42 I7 Intron 0 17.99 0.79 9.17 7.06 7.26 3.54 12.79 7.96 7.82 15.85 10.46 9.64 2.98 8.93 20.05 29.86 12.75 3.19 13.54 6.58 2.55 7.24 7.94 43 I7_AR1 ActiveIntronRegion 0 18.25 0.80 9.31 7.16 7.35 3.60 12.98 8.08 7.93 16.09 10.62 9.79 3.03 9.07 20.35 30.29 12.92 3.24 13.75 6.68 2.59 7.36 8.06 44 E8_Aa NovelBoundary 0 16.15 0.00 11.95 15.92 15.62 2.16 10.73 14.05 6.97 18.24 9.63 13.65 14.61 4.94 19.41 16.49 13.00 11.73 0.00 12.72 0.00 5.69 3.50 45 ER8a ExonRegion 0 58.73 27.18 33.73 27.51 27.41 47.98 18.19 20.92 19.82 47.18 45.43 39.99 54.26 66.03 102.68 53.26 56.63 22.01 46.90 19.22 43.45 43.14 45.89 46 E8_Da KnownBoundary 0 188.11 2.89 25.16 18.88 27.33 29.93 24.47 39.02 21.96 29.66 80.44 69.02 41.56 171.23 169.85 170.81 97.24 0.00 16.47 2.81 10.93 5.51 20.57 47 ER8b ExonRegion 0 4.23 0.05 2.97 2.57 0.89 6.72 3.38 0.73 1.15 5.94 0.26 3.94 0.00 7.22 10.70 1.32 0.51 0.00 2.62 0.00 1.86 0.14 5.81