Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHKA Gene 0 157.20 117.73 124.87 126.38 104.99 151.59 108.47 144.05 147.58 129.31 107.80 127.84 71.06 105.05 146.55 140.04 98.14 81.62 58.39 70.07 35.25 70.36 75.81 2 265689 Transcript 0 96.06 131.68 101.88 74.38 76.94 139.70 105.53 68.98 96.66 96.50 111.51 88.64 62.87 90.76 71.52 132.08 116.16 72.58 40.81 66.72 41.03 42.05 80.20 3 356135 Transcript 0 3.78 6.05 0.00 2.06 8.15 0.00 0.00 2.46 4.31 1.48 2.68 0.00 0.00 7.42 14.83 0.00 0.00 8.62 0.00 2.75 3.09 2.51 0.00 4 ER1a ExonRegion 0 1.72 4.99 4.91 2.75 2.07 10.28 5.60 5.91 7.89 8.74 19.02 1.76 3.53 14.27 7.77 17.36 16.22 20.14 11.60 8.04 9.36 2.06 11.10 5 E1a_E2a KnownJunction 0 0.00 40.39 54.32 16.95 4.33 45.83 22.92 22.10 47.11 61.89 35.27 45.46 6.82 72.28 42.65 52.12 41.61 103.84 17.13 53.95 17.11 8.39 32.27 6 I1_AR4 ActiveIntronRegion 1 6.35 6.10 7.72 4.50 0.00 4.03 6.22 11.75 19.51 3.78 0.00 4.33 18.76 0.00 2.90 2.38 0.00 3.70 0.00 1.49 0.00 0.00 1.47 7 ER2a ExonRegion 0 13.27 67.16 54.56 29.87 8.15 40.11 28.09 38.06 58.98 65.18 42.68 43.22 27.76 72.55 55.95 63.42 67.31 54.03 20.39 53.63 31.19 16.48 40.22 8 E2_Da NovelBoundary 0 11.34 9.21 9.82 14.15 7.22 2.90 18.72 18.81 32.15 17.59 10.27 30.46 18.18 16.66 10.75 57.68 52.36 27.53 12.99 38.54 9.14 5.57 8.71 9 E2a_E3a KnownJunction 0 12.15 81.89 75.16 31.10 24.28 20.56 14.97 26.04 50.87 63.21 36.96 12.30 6.82 48.97 36.59 36.74 43.76 32.75 23.34 27.29 14.27 29.70 33.29 10 E2a_E4a KnownJunction 0 3.78 6.05 0.00 2.06 8.15 0.00 0.00 2.46 4.31 1.48 2.68 0.00 0.00 7.42 14.83 0.00 0.00 8.62 0.00 2.75 3.09 2.51 0.00 11 I2 Intron 0 16.27 15.61 7.29 25.97 27.28 21.64 43.83 32.82 43.24 27.99 27.16 95.13 92.56 29.19 23.15 49.45 30.16 22.84 16.68 31.03 10.28 16.91 31.31 12 I2_SR1 SilentIntronRegion 0 9.86 15.72 8.88 23.90 23.45 10.95 39.61 30.57 34.23 21.82 13.74 69.35 73.32 20.27 20.08 43.49 22.32 14.12 11.44 24.67 6.38 8.27 26.85 13 I2_AR1 ActiveIntronRegion 1 11.39 11.82 7.23 25.03 17.47 7.53 35.78 27.57 26.88 17.43 9.42 76.15 55.73 16.78 12.53 24.70 18.40 7.71 9.65 28.30 4.58 8.26 18.55 14 I2_AR2 ActiveIntronRegion 1 12.87 9.76 16.22 23.71 21.51 4.55 44.75 37.54 32.51 28.40 8.27 104.77 66.04 18.26 15.78 33.17 17.96 13.16 2.55 26.21 1.15 7.17 23.61 15 I2_SR2 SilentIntronRegion 1 11.88 5.68 11.10 19.67 9.31 4.88 32.70 26.37 22.40 20.53 12.28 82.02 64.10 16.28 27.58 35.07 31.59 17.35 6.77 30.14 6.24 9.56 25.12 16 I2_AR3 ActiveIntronRegion 1 13.32 24.22 5.61 26.17 14.93 10.08 39.66 27.28 37.27 24.96 21.01 104.39 102.74 21.97 21.65 35.96 31.56 12.21 12.05 34.05 10.64 16.19 25.87 17 I2_SR3 SilentIntronRegion 0 7.99 17.95 6.25 17.77 17.42 12.71 39.93 25.06 40.76 24.85 29.58 150.69 140.13 28.27 15.61 54.87 37.86 24.16 15.94 43.58 14.79 15.92 35.60 18 I2_AR4 ActiveIntronRegion 1 4.54 20.05 14.70 31.93 26.38 11.79 75.09 39.26 51.87 44.89 16.02 124.32 146.06 16.24 17.41 34.39 25.94 9.24 3.19 43.46 2.20 27.38 28.95 19 I2_AR5 ActiveIntronRegion 0 9.15 13.46 6.10 24.49 22.84 14.20 45.13 26.45 39.03 25.92 29.61 99.48 95.24 31.12 22.16 51.02 37.02 25.26 19.07 33.06 9.11 11.66 30.93 20 I2_SR4 SilentIntronRegion 0 15.42 11.07 5.16 19.89 30.16 22.86 42.40 26.98 40.85 21.93 25.62 78.16 77.10 30.13 23.94 46.81 29.00 20.09 17.88 25.01 8.15 19.02 29.47 21 I2_AR6 ActiveIntronRegion 0 27.60 15.92 7.87 37.04 50.81 54.83 59.78 57.40 72.57 45.51 42.59 97.57 133.59 45.79 29.85 71.95 36.45 38.78 21.53 39.30 17.05 31.84 40.77 22 I2_SR5 SilentIntronRegion 0 29.41 21.61 15.84 40.63 49.51 45.87 56.61 57.85 64.10 50.04 48.12 119.49 117.87 39.45 29.70 61.92 23.14 31.74 18.28 26.61 10.05 31.42 37.48 23 I2_AR7 ActiveIntronRegion 0 17.07 12.95 3.76 39.25 46.38 32.03 62.89 63.55 40.14 39.61 55.47 231.63 178.85 61.66 53.87 69.45 24.54 17.06 10.41 47.30 16.75 36.95 28.78 24 I2_SR6 SilentIntronRegion 0 28.05 21.96 10.42 54.01 55.49 69.88 81.16 72.15 65.27 62.06 42.55 164.43 137.81 41.54 33.88 68.70 23.82 20.41 18.92 28.63 7.82 28.55 31.91 25 I2_AR8 ActiveIntronRegion 0 44.33 15.42 9.83 39.32 37.49 43.24 42.27 47.37 59.96 41.89 38.71 71.96 54.91 36.29 31.85 62.75 26.91 46.15 25.61 33.02 18.28 22.23 43.69 26 E3_Aa NovelBoundary 1 56.23 33.35 13.39 32.20 44.23 53.21 77.15 42.31 46.53 27.96 25.43 12.15 28.08 28.90 25.84 79.30 18.51 45.76 12.05 47.94 12.23 17.70 45.41 27 ER3a ExonRegion 0 87.56 117.99 93.76 67.72 72.84 131.35 108.42 67.89 96.77 89.88 130.90 116.33 80.51 107.22 74.73 148.77 129.59 76.37 52.79 79.43 53.58 43.91 77.98 28 E3a_E4a KnownJunction 0 188.48 195.16 136.72 124.33 133.70 267.18 193.21 112.99 142.33 136.40 166.67 137.29 101.29 116.08 103.22 210.71 175.13 108.61 46.31 93.45 55.23 52.54 129.33 29 E3a_E5a NovelJunction 0 6.22 17.96 5.50 10.62 12.82 19.59 22.61 5.54 23.12 16.63 4.21 11.40 0.00 0.00 14.96 15.47 3.83 17.49 4.33 2.36 0.00 5.76 3.93 30 ER4a ExonRegion 0 102.54 118.38 124.21 130.86 96.26 193.19 121.54 130.04 151.39 142.11 133.83 134.14 100.55 134.12 109.87 195.69 112.52 144.50 62.48 98.34 52.75 46.29 106.05 31 E4a_E5a KnownJunction 0 100.83 116.30 190.77 131.02 69.35 182.17 93.93 191.32 182.87 167.22 134.77 92.43 87.49 126.79 110.02 223.45 137.35 133.07 63.91 125.15 68.88 75.01 124.97 32 ER5a ExonRegion 0 178.10 161.81 176.80 176.45 132.53 213.99 184.98 194.12 204.57 202.34 139.47 217.15 129.01 140.53 144.85 218.38 135.09 79.96 73.48 111.73 42.58 87.60 126.63 33 E5a_E6a KnownJunction 0 242.78 261.01 151.15 162.78 255.35 322.83 237.82 197.73 209.55 193.81 140.46 226.72 142.04 102.07 163.30 158.16 122.39 90.37 65.60 82.39 22.12 69.99 57.45 34 ER6a ExonRegion 0 244.53 316.44 148.56 201.34 169.26 244.87 189.78 207.07 209.56 190.98 194.16 240.92 130.70 115.79 148.79 189.23 133.86 87.39 75.78 90.01 16.22 114.20 112.24 35 E6a_E7a KnownJunction 0 232.49 407.30 155.73 226.11 110.78 101.70 164.42 194.03 210.07 153.57 143.46 224.02 140.09 104.89 148.34 126.80 109.21 37.14 52.43 79.90 10.38 81.75 66.67 36 ER7a ExonRegion 0 172.51 257.54 137.74 188.08 151.70 161.96 177.97 204.87 203.84 167.53 168.49 235.33 160.81 96.59 137.74 139.99 122.30 34.54 60.52 75.87 19.61 78.61 60.92 37 E7a_E8a KnownJunction 0 216.78 287.98 162.38 226.41 273.26 194.66 248.24 249.77 220.25 175.01 184.52 346.61 179.53 125.79 216.82 188.75 112.58 41.49 85.46 66.99 29.59 73.97 63.94 38 ER8a ExonRegion 1 201.05 269.56 207.13 273.15 205.49 232.56 236.33 274.90 249.07 200.68 166.95 370.86 202.42 115.79 189.80 154.11 166.81 58.39 98.38 117.21 17.86 114.74 94.91 39 E8_Da NovelBoundary 0 0.00 0.00 7.95 10.09 0.00 0.00 2.25 6.12 16.29 6.12 0.00 5.40 6.82 0.00 5.81 22.47 8.79 24.46 4.42 6.26 3.15 5.02 3.84 40 E8a_E9a KnownJunction 1 267.68 254.49 220.25 243.49 196.35 306.47 194.71 245.34 248.15 212.69 136.51 305.65 146.91 80.05 150.44 107.92 161.48 41.00 58.64 105.02 30.95 71.89 62.91 41 ER9a ExonRegion 0 278.00 368.12 216.23 257.89 232.50 254.65 209.02 242.76 275.50 218.32 161.62 285.39 171.21 98.92 165.05 134.54 164.44 44.18 76.57 102.32 23.23 111.82 92.60 42 E9_Da NovelBoundary 0 2.96 19.27 8.63 18.91 8.15 0.00 5.79 14.70 27.31 17.08 2.21 11.70 7.79 4.89 14.83 0.00 13.18 20.64 31.15 8.82 0.00 6.25 20.40 43 E9a_E10a KnownJunction 1 313.69 350.27 205.85 241.26 213.75 209.03 205.49 234.78 257.20 180.94 128.98 320.50 224.99 108.54 249.58 156.80 180.27 62.47 106.54 93.89 17.73 149.53 123.44 44 I9_AR1 ActiveIntronRegion 0 6.41 9.60 10.83 18.53 9.74 8.50 24.67 5.87 16.42 11.31 5.63 9.19 19.58 5.65 8.27 17.88 8.41 8.44 5.59 6.75 2.51 1.56 9.37 45 E10_Aa NovelBoundary 0 9.56 6.71 16.76 20.41 7.98 2.78 30.07 17.33 15.57 18.45 12.58 11.70 8.28 2.41 18.17 11.88 8.23 15.50 18.07 24.10 15.07 11.63 12.55 46 ER10a ExonRegion 1 249.25 255.11 177.87 192.41 202.93 241.14 219.47 193.60 226.97 166.27 139.02 347.21 178.70 121.99 155.77 153.41 133.70 83.22 64.60 106.70 24.61 116.21 73.42 47 E10a_E11a KnownJunction 1 302.28 212.33 184.97 206.70 211.21 330.49 273.19 220.24 221.12 179.68 145.30 327.11 114.12 146.68 185.30 135.61 144.37 136.96 78.87 88.08 28.97 128.16 84.17 48 I10 Intron 0 9.49 10.56 11.51 20.40 8.03 10.01 13.25 12.76 16.01 12.62 4.89 9.11 9.92 10.63 11.85 17.83 11.13 16.53 7.62 11.91 5.05 7.09 10.99 49 I10_AR1 ActiveIntronRegion 0 7.56 6.39 19.61 35.63 2.68 9.43 2.65 24.20 21.53 20.64 6.63 16.08 9.38 16.94 19.48 24.20 23.11 30.88 5.01 10.94 5.98 10.12 20.14 50 I10_SR2 SilentIntronRegion 0 9.76 10.64 22.38 28.41 6.30 8.94 11.37 18.03 21.08 17.25 7.04 8.37 10.42 17.58 12.99 20.84 14.41 18.81 9.45 18.79 4.06 6.53 16.67 51 I10_AR2 ActiveIntronRegion 0 7.36 8.52 12.14 18.76 9.68 7.25 18.72 17.78 24.58 14.69 4.14 3.30 4.69 14.62 10.64 5.52 20.28 24.72 6.37 12.16 8.19 7.64 13.70 52 I10_AR3 ActiveIntronRegion 0 14.76 7.60 17.96 27.11 10.86 15.33 15.18 18.92 24.93 14.53 5.42 9.02 10.71 10.91 12.66 19.35 13.79 16.99 10.94 14.55 4.16 7.95 10.63 53 ER11a ExonRegion 0 198.62 194.68 184.52 182.81 210.63 223.99 178.49 180.05 179.91 151.27 124.84 241.61 142.82 113.03 182.96 154.33 93.11 139.89 63.24 92.06 26.18 114.72 81.69 54 E11_Da NovelBoundary 1 21.56 18.15 31.81 56.77 21.31 24.36 19.43 48.55 60.33 17.78 12.42 75.02 79.70 24.90 19.66 11.02 39.08 17.58 18.54 24.22 0.00 14.08 17.41 55 E11a_E12a KnownJunction 1 178.11 214.11 161.88 132.65 251.36 208.63 228.90 137.93 124.25 150.94 76.39 172.86 142.20 100.89 178.50 172.69 71.72 112.55 71.15 54.46 43.92 71.89 102.09 56 I11 Intron 0 20.94 15.50 19.06 35.94 14.08 16.64 15.74 24.31 35.57 21.87 16.32 19.44 10.92 16.63 24.66 27.78 13.18 28.60 14.16 20.47 6.80 14.18 24.78 57 I11_AR1 ActiveIntronRegion 0 23.41 17.31 21.40 40.20 15.82 18.59 17.63 27.29 39.81 24.47 18.29 21.43 12.04 18.66 27.82 31.27 14.55 32.02 15.98 22.87 7.59 15.96 27.87 58 I11 Intron 0 27.95 12.78 16.36 31.92 21.03 20.17 18.73 19.84 26.76 20.55 15.50 13.19 8.63 20.55 29.14 21.25 16.08 25.28 12.27 12.54 8.49 11.95 19.85 59 I11_AR1 ActiveIntronRegion 0 29.30 13.40 17.15 33.46 22.05 21.15 19.63 20.80 28.05 21.54 16.25 13.83 9.05 21.54 30.55 22.28 16.86 26.50 12.86 13.15 8.90 12.53 20.81 60 E12_Aa NovelBoundary 0 45.19 12.70 15.97 36.56 28.01 13.57 15.77 34.21 28.62 30.46 9.27 13.95 5.68 19.01 23.36 27.34 22.91 50.24 14.02 17.64 13.96 19.23 10.59 61 ER12a ExonRegion 0 217.86 94.10 158.62 148.74 119.20 182.39 110.88 185.29 181.52 159.86 125.36 109.77 53.78 142.19 221.40 184.72 114.91 111.19 75.51 80.11 51.33 91.27 95.91 62 IG5 Intergenic 0 40.01 0.79 20.93 11.27 18.80 6.75 10.13 22.37 25.96 16.09 35.53 12.36 8.03 59.28 64.08 65.58 35.35 3.10 2.64 2.43 27.13 21.18 29.62 63 IG5_AR3 ActiveIntergenicRegion 0 48.38 0.91 22.70 11.35 21.54 7.50 11.23 23.06 28.55 18.88 35.07 9.16 9.43 61.07 69.11 71.63 34.91 3.38 2.73 2.79 28.47 21.49 30.01 64 IG5_SR1 SilentIntergenicRegion 0 16.20 0.60 10.67 5.54 13.49 4.11 7.04 14.86 20.45 9.77 38.81 12.30 5.94 59.51 53.58 49.50 28.70 2.17 1.95 2.58 33.88 27.67 26.27 65 IG5_AR2 ActiveIntergenicRegion 0 27.22 0.56 19.35 12.58 13.58 6.06 8.28 23.24 22.90 12.43 38.05 17.71 5.32 59.43 59.25 55.01 38.08 2.79 2.78 1.89 25.97 20.82 30.00 66 IG5_AR1 ActiveIntergenicRegion 0 23.75 0.65 15.69 8.04 16.86 3.36 8.88 15.84 15.44 6.61 26.79 22.96 6.76 38.74 38.33 59.91 32.19 2.09 1.49 0.90 13.20 15.16 26.11