Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNAJC4 Gene 0 92.45 39.00 132.33 94.27 59.71 97.46 28.13 122.02 112.81 150.24 134.65 64.01 91.34 152.77 210.48 151.34 115.17 84.72 126.60 51.89 162.24 74.84 86.56 2 321685 Transcript 1 21.91 5.26 7.01 8.68 8.76 14.28 3.11 34.22 52.03 25.31 33.99 1.13 0.51 39.88 14.74 20.97 20.70 7.94 8.04 14.28 6.48 9.23 4.62 3 321460 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 355040 Transcript 0 3.48 0.00 10.88 3.16 0.00 19.36 0.00 4.56 7.26 5.61 2.53 0.00 6.82 0.00 0.00 0.00 4.11 0.00 0.00 0.00 5.75 2.94 0.00 5 IG1 Intergenic 0 10.19 0.00 2.40 4.45 10.54 4.82 1.74 14.66 11.68 12.00 21.58 7.02 2.54 15.24 10.65 9.11 10.12 5.63 3.49 6.99 4.34 2.74 11.57 6 IG1_AR1 ActiveIntergenicRegion 0 10.28 0.00 2.42 4.48 10.62 4.83 1.75 14.79 11.78 12.10 21.76 7.08 2.56 15.38 10.74 9.19 10.19 5.68 3.52 7.05 4.38 2.76 11.63 7 ER1a ExonRegion 0 9.33 2.40 0.38 3.08 3.29 4.75 0.68 11.04 17.01 6.12 18.98 0.00 0.00 23.24 7.44 9.75 12.70 2.80 5.72 7.20 0.00 4.59 0.00 8 E1a_E2a KnownJunction 0 29.93 6.31 2.78 9.29 11.54 13.00 2.25 43.78 84.89 30.46 40.69 0.00 0.00 53.80 14.22 24.61 27.86 6.30 8.85 18.02 2.53 11.08 0.00 9 ER2a ExonRegion 1 26.47 7.07 17.86 13.67 11.44 25.09 6.39 47.82 54.18 39.35 42.29 3.40 1.52 42.60 22.56 28.53 21.53 14.71 9.56 17.61 16.90 12.02 13.85 10 E2_Ab KnownBoundary 0 62.83 3.35 32.58 27.04 7.22 46.73 4.06 46.95 65.13 67.88 40.75 6.30 6.01 64.45 59.46 43.75 30.01 32.71 21.65 11.31 19.34 33.25 36.11 11 ER2b ExonRegion 0 86.72 34.87 99.37 55.09 54.72 141.38 28.22 88.23 89.34 132.85 97.08 27.78 38.93 121.92 144.88 112.15 93.82 62.65 98.47 39.26 119.54 49.12 77.26 12 E2a_E3a KnownJunction 1 27.93 93.21 108.69 76.91 55.26 149.12 48.53 95.09 94.91 115.48 53.65 87.33 151.29 137.32 205.08 107.49 80.97 70.22 115.30 16.81 126.71 62.64 64.19 13 E2a_E6a NovelJunction 0 3.78 3.35 8.54 0.00 8.32 8.69 2.08 2.42 0.00 1.37 2.11 0.00 0.00 0.00 10.26 0.00 0.00 2.28 0.00 0.00 3.03 8.88 0.00 14 I2 Intron 0 24.64 9.22 16.37 17.37 18.20 12.66 11.60 23.88 15.36 28.70 15.53 7.06 5.59 16.91 11.24 16.23 11.56 7.10 9.20 10.96 7.27 10.52 16.64 15 I2_AR1 ActiveIntronRegion 0 18.13 7.52 11.37 13.05 19.79 9.99 13.66 14.03 10.03 22.62 8.65 7.09 3.65 13.91 5.71 15.04 9.00 5.54 7.44 7.86 5.58 8.11 20.58 16 I2_AR2 ActiveIntronRegion 0 32.22 11.22 22.17 22.42 16.54 15.79 9.35 35.26 21.53 35.84 23.47 7.08 7.84 20.46 17.60 17.72 14.58 8.93 11.27 14.56 9.24 13.34 12.32 17 E3_Aa NovelBoundary 0 41.12 8.75 24.57 15.55 24.53 14.03 11.79 49.82 29.95 52.33 17.00 0.00 6.49 26.90 14.22 19.40 4.39 11.32 4.80 32.66 9.02 0.00 24.58 18 ER3a ExonRegion 0 142.10 76.80 218.85 145.51 87.19 96.86 40.09 185.13 185.06 247.68 222.72 134.58 211.85 275.88 352.16 401.21 154.79 219.69 312.54 73.04 209.26 191.06 211.06 19 E3_Da NovelBoundary 0 18.89 3.29 30.93 29.30 12.48 11.75 9.85 30.93 7.90 41.69 15.74 5.85 0.00 4.24 14.46 4.36 9.54 2.24 7.91 12.46 2.72 0.00 7.43 20 E3a_E4a KnownJunction 0 207.07 70.78 277.81 182.33 97.28 99.77 33.61 284.64 221.27 340.93 369.20 105.78 201.93 282.07 364.67 292.57 272.65 178.71 298.46 95.56 342.43 248.24 163.13 21 E3a_E6a KnownJunction 0 3.48 0.00 10.88 3.16 0.00 19.36 0.00 4.56 7.26 5.61 2.53 0.00 6.82 0.00 0.00 0.00 4.11 0.00 0.00 0.00 5.75 2.94 0.00 22 I3 Intron 0 12.07 5.35 21.83 18.71 9.98 9.86 8.42 27.96 18.37 41.05 10.39 4.30 2.36 12.87 16.90 13.37 7.24 12.99 14.32 12.61 5.08 8.46 18.04 23 I3_AR1 ActiveIntronRegion 0 12.12 5.38 21.92 18.79 10.02 9.89 8.46 28.08 18.45 41.23 10.43 4.32 2.37 12.92 16.98 13.43 7.27 13.05 14.39 12.66 5.10 8.49 18.11 24 E4_Aa NovelBoundary 0 14.00 3.35 29.72 17.01 19.86 21.69 12.98 35.00 35.88 51.71 19.11 0.00 0.00 29.20 15.95 32.98 17.58 24.83 41.60 13.87 18.72 15.12 21.34 25 ER4a ExonRegion 0 164.61 53.65 230.20 167.66 82.11 100.37 37.15 215.12 201.62 293.61 269.31 106.95 178.60 242.25 355.40 287.22 215.02 162.15 236.44 82.30 324.30 143.28 144.69 26 E4_Da NovelBoundary 0 11.19 9.27 33.29 9.59 4.33 11.07 10.11 44.48 18.84 42.74 4.16 0.00 6.66 12.07 17.80 19.82 8.04 15.09 22.02 8.88 5.68 6.18 16.48 27 E4a_E5a KnownJunction 0 234.71 78.41 263.03 227.04 103.06 98.92 18.72 226.85 169.79 311.33 239.38 142.40 226.61 329.51 462.95 421.68 218.98 198.27 376.95 110.90 335.70 203.30 211.79 28 E5_Aa NovelBoundary 0 16.37 6.45 42.72 13.15 15.70 15.67 15.59 39.18 20.34 34.84 7.05 11.85 6.82 9.36 15.33 40.16 8.79 23.34 24.57 14.06 11.37 13.90 11.95 29 ER5a ExonRegion 0 89.70 49.21 246.80 197.42 99.66 116.33 46.52 223.25 173.27 220.91 196.33 123.98 178.86 243.15 351.39 192.20 180.22 126.54 176.98 91.61 257.59 103.92 101.30 30 E5_Da NovelBoundary 0 10.00 9.80 15.58 28.80 16.81 17.04 16.34 30.19 20.20 40.91 12.58 6.30 5.84 20.78 22.25 13.93 8.04 10.86 13.37 21.48 16.56 8.45 39.01 31 E5a_E6a KnownJunction 0 65.79 66.63 202.06 204.57 121.90 128.45 32.33 175.63 182.35 178.39 197.00 88.83 101.45 210.73 307.81 203.28 153.44 83.65 116.24 85.78 214.00 52.17 85.70 32 I5 Intron 0 26.64 7.75 16.94 15.78 17.52 16.35 11.71 26.31 16.95 30.62 10.01 6.45 5.46 13.05 18.43 18.60 8.31 12.29 8.02 12.55 9.51 5.85 9.93 33 I5_AR1 ActiveIntronRegion 0 29.61 7.28 16.39 19.67 24.56 24.07 18.98 30.18 20.74 33.54 12.05 9.26 6.77 14.45 21.55 22.95 6.93 10.44 10.12 15.71 13.94 6.15 13.23 34 I5_SR1 SilentIntronRegion 0 22.82 8.30 18.44 25.64 22.88 13.36 18.95 39.18 32.79 67.25 13.14 8.15 3.28 18.92 21.66 26.15 25.69 18.35 15.02 13.51 20.16 13.02 18.84 35 I5_AR2 ActiveIntronRegion 0 27.99 10.17 25.05 23.77 29.43 23.84 16.92 39.56 33.49 64.61 3.87 14.91 6.77 10.83 12.57 41.61 19.07 17.66 8.49 18.91 22.04 4.40 22.51 36 I5_AR3 ActiveIntronRegion 0 29.65 8.80 16.36 12.91 12.76 11.92 8.42 24.93 12.49 22.46 8.66 4.75 4.46 12.27 16.89 12.88 7.15 13.54 6.43 11.37 6.05 4.52 6.79 37 E6_Aa NovelBoundary 0 24.37 8.55 19.48 19.21 7.30 8.06 6.71 54.26 23.35 53.27 20.11 5.85 0.00 19.60 4.45 20.34 4.49 15.88 3.48 14.32 6.30 9.31 11.10 38 ER6a ExonRegion 0 107.77 53.85 183.35 158.60 86.12 126.74 41.59 162.53 148.38 162.07 167.21 110.72 125.18 201.00 335.74 179.49 148.81 88.52 143.01 84.03 201.50 64.01 107.07 39 E6_Da NovelBoundary 0 88.53 30.98 102.78 43.48 52.89 30.72 19.03 100.30 54.63 86.90 41.12 46.37 26.95 46.21 76.89 27.09 44.13 41.66 12.42 14.57 79.63 7.65 20.83 40 E6a_E7a KnownJunction 0 76.31 3.16 125.63 111.84 19.19 37.31 17.75 143.14 81.36 119.11 108.13 42.16 81.98 202.31 175.78 93.91 119.78 58.74 113.23 46.47 121.82 43.05 73.24 41 I6 Intron 1 36.37 12.40 6.07 7.88 8.90 10.17 8.07 14.28 17.35 10.42 21.43 11.86 48.02 32.25 63.20 41.19 5.49 7.13 37.08 7.08 36.60 27.72 19.54 42 I6_AR1 ActiveIntronRegion 1 37.18 12.68 6.17 8.04 9.10 10.39 8.25 14.58 17.72 10.65 21.86 12.12 49.04 32.90 64.57 42.11 5.61 7.29 37.91 7.23 37.41 28.31 19.97 43 E7_Aa NovelBoundary 0 47.79 8.35 70.13 45.65 38.71 19.87 12.98 36.60 30.29 62.56 22.27 24.61 33.28 70.46 62.06 19.57 43.20 9.74 29.46 14.06 49.85 14.39 23.65 44 ER7a ExonRegion 0 68.58 28.95 51.22 36.90 34.82 50.36 13.16 42.91 35.82 45.73 60.58 43.36 45.26 75.60 129.68 47.67 59.83 19.37 45.04 23.42 104.69 42.33 36.71