Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C11orf66 Gene 0 12.41 2.10 5.29 8.39 6.24 3.85 2.78 9.78 11.40 17.65 1.87 2.14 0.67 4.96 8.82 7.52 2.97 9.91 10.29 2.84 22.17 8.88 11.84 2 338608 Transcript 0 10.74 2.36 0.82 2.67 0.00 5.20 0.75 7.42 5.33 6.32 1.46 1.01 0.00 2.02 6.43 2.57 2.02 8.02 4.35 0.93 11.01 7.24 3.58 3 432063 Transcript 0 0.00 0.00 1.80 3.43 0.00 0.00 1.72 2.42 5.18 0.00 0.00 0.00 0.00 14.66 4.45 0.00 0.00 5.14 0.00 0.00 2.29 0.00 3.59 4 IG20 Intergenic 0 10.99 10.00 6.14 14.26 16.10 6.55 10.54 13.28 15.70 24.94 3.10 7.50 9.73 4.35 10.10 13.83 10.12 17.96 7.96 24.67 12.66 3.94 15.69 5 IG20_AR1 ActiveIntergenicRegion 0 12.18 13.32 4.53 17.73 25.49 10.19 15.50 18.91 20.64 36.64 3.26 21.55 25.79 7.03 6.03 19.17 14.41 21.33 9.17 41.58 16.60 4.75 20.40 6 IG20_AR3 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 5.35 0.00 0.00 10.37 17.29 6.88 0.00 17.32 0.00 0.00 2.90 5.94 0.00 0.00 6.37 19.15 2.20 0.00 0.00 7 IG20_AR5 ActiveIntergenicRegion 0 4.48 5.79 1.98 3.25 15.13 7.97 19.45 12.37 18.10 27.44 1.04 13.65 7.22 2.81 5.47 16.92 7.11 8.24 6.13 27.58 10.68 3.69 13.78 8 IG20_SR1 SilentIntergenicRegion 0 14.52 12.21 5.78 18.89 20.31 11.79 21.05 21.94 26.53 48.90 3.99 14.14 18.14 7.53 11.69 24.07 19.76 29.64 12.65 50.11 21.61 5.64 29.00 9 IG20_AR6 ActiveIntergenicRegion 0 14.67 15.98 5.93 22.87 27.69 8.17 21.39 17.20 24.11 48.48 8.79 12.72 12.13 4.62 10.10 26.95 12.65 30.54 15.55 48.64 21.23 7.89 32.44 10 IG20_SR2 SilentIntergenicRegion 0 20.18 15.86 8.66 16.35 22.48 9.60 23.62 19.99 23.09 43.25 4.88 8.12 17.53 6.62 14.85 21.22 15.44 37.74 12.52 50.45 17.27 3.57 21.61 11 IG20_AR7 ActiveIntergenicRegion 0 15.86 13.61 13.49 20.47 27.73 7.51 19.72 19.53 24.68 39.77 6.07 4.84 20.68 4.47 14.20 19.30 16.51 24.52 14.90 44.06 14.14 4.44 24.21 12 IG20_SR3 SilentIntergenicRegion 0 12.22 11.89 8.10 19.61 18.48 6.73 11.07 14.46 18.37 28.66 3.04 9.19 10.27 4.58 13.31 16.55 12.50 22.34 9.49 30.13 12.57 3.32 15.26 13 IG20_AR8 ActiveIntergenicRegion 0 50.36 14.56 5.53 14.99 35.45 7.01 20.15 7.40 15.51 28.17 9.27 10.44 6.00 5.83 9.77 10.97 14.37 20.81 7.26 21.34 15.65 3.13 19.74 14 IG20_SR4 SilentIntergenicRegion 0 16.38 20.32 12.65 29.33 29.25 12.65 13.40 28.27 29.79 38.39 5.26 9.33 11.64 7.39 18.02 19.87 12.65 23.27 11.76 33.66 15.78 6.80 20.68 15 IG20_AR9 ActiveIntergenicRegion 0 31.54 18.82 12.71 18.87 39.77 19.92 13.14 19.76 17.70 20.78 10.38 19.44 11.22 21.85 26.40 17.42 20.97 8.22 7.31 35.46 9.25 16.50 2.88 16 IG20_SR5 SilentIntergenicRegion 0 9.57 11.52 3.82 9.42 20.51 9.35 6.13 12.55 11.76 20.19 1.39 3.75 8.04 2.50 7.77 13.06 4.67 10.84 8.47 13.07 6.88 4.14 15.63 17 IG20_SR6 SilentIntergenicRegion 0 5.38 2.55 1.99 3.31 4.05 2.04 3.98 3.41 4.53 6.67 1.33 3.46 4.08 1.90 5.21 5.13 5.22 8.47 2.86 5.58 9.41 2.71 9.23 18 IG20_SR7 SilentIntergenicRegion 0 2.84 0.63 1.79 1.77 0.89 0.45 1.06 0.95 2.68 2.51 0.59 1.31 0.99 1.91 2.58 4.00 3.43 4.05 0.87 1.45 9.27 1.27 5.93 19 ER1a ExonRegion 0 0.00 1.07 0.96 0.00 0.00 2.89 0.70 0.00 0.00 0.90 0.00 0.00 0.00 0.85 2.15 1.56 0.00 2.86 1.67 2.24 2.32 0.00 3.24 20 E1_Da NovelBoundary 0 3.11 0.00 0.00 3.96 0.00 0.00 2.21 5.54 1.42 16.14 0.00 0.00 0.00 0.00 0.00 0.00 4.21 6.38 0.00 2.75 3.03 0.00 3.50 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I1_SR1 SilentIntronRegion 0 2.87 3.31 2.97 1.65 2.18 3.43 1.08 2.79 1.00 3.71 0.52 0.00 1.05 1.09 1.90 4.84 0.90 5.73 5.18 2.31 7.76 1.13 5.58 23 E2_Aa NovelBoundary 0 14.00 0.00 3.08 0.00 11.38 10.85 6.54 5.46 4.80 9.24 0.00 0.00 6.82 4.59 0.00 11.54 4.11 3.52 0.00 6.33 11.18 0.00 4.35 24 ER2a ExonRegion 0 9.33 0.76 4.05 5.40 5.08 3.88 0.90 8.74 3.50 9.39 1.44 2.65 0.00 5.50 2.60 6.99 2.55 9.52 8.30 2.89 15.04 4.88 10.82 25 E2a_E3a KnownJunction 0 9.41 0.00 3.05 8.72 7.39 2.90 1.77 11.99 6.45 9.75 0.00 0.00 0.00 4.77 0.00 8.20 0.00 6.26 0.00 3.13 2.66 2.57 7.51 26 E3_Aa NovelBoundary 0 3.78 0.00 5.14 4.13 0.00 0.00 0.00 4.35 2.63 1.37 0.00 0.00 0.00 0.00 0.00 12.30 0.00 2.16 0.00 0.00 8.40 0.00 0.00 27 ER3a ExonRegion 0 10.69 0.86 4.88 5.93 5.44 5.80 2.39 7.69 6.00 12.65 0.00 0.00 0.00 4.13 6.49 4.74 2.71 5.59 1.38 0.32 25.10 6.07 10.40 28 E3a_E4a KnownJunction 0 3.70 0.00 3.05 6.79 3.48 0.00 0.00 11.83 3.04 6.88 0.00 0.00 0.00 5.12 0.00 0.00 0.00 8.21 0.00 0.00 21.44 0.00 12.29 29 ER4a ExonRegion 0 8.42 2.18 5.55 5.77 3.86 2.61 0.88 7.76 5.27 15.07 1.95 1.18 0.00 5.04 3.45 6.68 0.02 7.52 4.22 2.82 23.15 5.41 15.77 30 E4a_E5a KnownJunction 0 6.67 6.64 1.63 3.40 3.31 10.68 0.00 10.68 6.25 20.71 0.00 0.00 0.00 12.30 0.00 3.59 0.00 10.90 0.00 0.00 24.83 0.00 27.91 31 E5_Aa NovelBoundary 0 7.04 0.00 0.00 0.00 0.00 0.00 0.00 4.93 3.04 10.83 2.68 0.00 0.00 0.00 4.45 4.19 4.02 0.00 0.00 0.00 8.46 0.00 4.35 32 ER5a ExonRegion 0 12.42 1.43 5.01 10.11 5.12 3.41 4.35 14.10 17.51 37.01 3.27 2.01 0.25 7.44 9.24 10.74 6.91 20.60 19.58 5.23 35.41 12.31 16.07 33 E5a_E6a KnownJunction 0 14.37 0.00 5.59 7.86 0.00 0.00 7.95 15.77 30.56 52.97 4.90 6.30 0.00 7.65 4.45 27.00 25.34 27.65 14.02 8.31 41.95 8.14 35.60 34 ER6a ExonRegion 0 22.55 0.00 4.38 4.47 3.72 2.95 5.79 8.97 24.05 25.91 3.44 7.31 6.30 8.15 5.58 15.00 9.08 16.25 12.24 5.02 27.10 7.98 16.66 35 E6_Da NovelBoundary 0 0.00 0.00 2.93 4.03 11.97 5.79 1.72 8.63 11.00 10.50 0.00 0.00 0.00 4.83 4.45 4.36 4.77 26.32 7.72 5.69 16.74 11.88 0.00 36 E6a_E7a KnownJunction 0 26.45 0.00 0.00 5.03 3.74 0.00 4.06 8.63 15.60 9.54 2.68 0.00 0.00 4.89 0.00 12.73 3.74 6.72 8.09 2.56 14.58 3.12 7.00 37 I6 Intron 0 5.17 0.78 3.52 6.26 3.78 1.65 1.19 2.98 6.14 11.86 0.74 1.83 2.09 2.11 1.10 6.87 1.27 12.86 9.42 1.91 13.58 6.96 8.68 38 I6_AR1 ActiveIntronRegion 0 1.84 1.13 1.17 2.92 5.41 2.35 0.50 0.88 4.12 7.65 0.00 0.00 2.60 3.00 2.27 7.24 1.83 10.22 14.33 1.18 14.16 10.15 9.96 39 I6_SR1 SilentIntronRegion 0 6.21 0.68 4.25 7.32 3.31 1.45 1.41 3.63 6.80 13.21 0.98 2.40 1.95 1.85 0.75 6.81 1.11 13.75 7.99 2.15 13.50 6.04 8.34 40 E7_Aa NovelBoundary 0 10.37 3.29 10.26 4.96 20.46 4.83 6.27 6.16 5.61 9.59 2.42 0.00 0.00 7.06 0.00 0.00 3.83 10.99 25.41 3.00 39.85 7.84 4.35 41 ER7a ExonRegion 0 15.88 3.10 6.76 8.33 5.14 3.20 5.41 14.30 22.80 21.24 3.66 0.00 0.00 4.71 16.66 8.86 2.13 9.48 11.81 4.63 26.31 15.41 16.35 42 E7_Da NovelBoundary 0 3.11 0.00 4.88 3.23 0.00 12.61 0.00 8.91 4.66 8.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.52 0.00 0.00 17.67 0.00 0.00 43 E7a_E8a KnownJunction 0 3.78 5.92 0.00 2.03 0.00 7.21 0.00 7.39 6.13 5.48 2.32 0.00 0.00 0.00 0.00 7.35 3.74 11.36 9.22 0.00 15.81 6.18 7.17 44 E7a_E9a KnownJunction 0 0.00 0.00 1.80 3.43 0.00 0.00 1.72 2.42 5.18 0.00 0.00 0.00 0.00 14.66 4.45 0.00 0.00 5.14 0.00 0.00 2.29 0.00 3.59 45 I7 Intron 0 5.09 0.65 4.69 0.98 3.00 2.65 1.06 4.13 3.54 7.95 0.62 0.00 0.00 1.55 4.35 3.81 2.65 7.51 9.71 1.36 9.54 2.34 1.88 46 I7_SR1 SilentIntronRegion 0 5.12 0.66 4.72 0.98 3.02 2.66 1.07 4.16 3.56 8.00 0.62 0.00 0.00 1.56 4.38 3.83 2.66 7.56 9.77 1.37 9.60 2.35 1.90 47 E8_Aa NovelBoundary 0 2.89 0.00 8.60 1.56 3.90 2.90 4.06 7.64 8.48 22.24 4.26 0.00 0.00 0.00 0.00 8.72 16.36 19.90 4.71 0.00 10.63 5.08 0.00 48 ER8a ExonRegion 0 12.06 1.15 1.23 2.82 0.00 6.17 2.25 7.52 6.28 6.00 2.06 3.03 0.00 3.71 5.95 0.35 2.31 9.15 3.82 0.28 14.07 7.15 3.57 49 E8_Da NovelBoundary 0 2.82 0.00 11.95 2.06 0.00 2.90 8.74 1.85 8.36 15.88 2.58 0.00 0.00 4.59 4.45 8.72 0.00 12.15 8.19 2.94 11.68 11.39 8.19 50 E8a_E9a KnownJunction 0 16.37 0.00 1.24 3.16 0.00 2.21 0.00 7.35 3.59 7.47 0.00 0.00 0.00 2.35 13.35 0.00 0.00 3.56 0.00 2.49 3.15 8.39 0.00 51 E9_Aa NovelBoundary 0 17.11 0.00 1.69 3.80 0.00 0.00 2.03 0.00 3.76 21.79 2.00 0.00 0.00 0.00 6.30 7.18 4.77 3.94 8.28 0.00 5.75 2.88 0.00 52 ER9a ExonRegion 0 16.42 6.01 7.23 9.57 7.07 1.24 3.24 7.99 10.93 18.97 1.96 10.25 0.00 9.60 17.34 7.00 4.17 7.65 3.59 4.79 20.42 15.30 6.82 53 E9_Da NovelBoundary 0 12.74 0.00 12.21 9.46 0.00 2.90 1.68 2.51 0.00 9.99 2.26 0.00 0.00 2.12 16.19 12.90 0.00 5.60 8.94 0.00 13.59 2.39 3.76 54 E9a_E10a KnownJunction 0 28.15 8.95 14.22 3.80 7.64 2.44 4.37 11.17 12.79 25.63 2.37 0.00 0.00 11.83 30.41 0.00 3.65 8.29 13.18 0.00 17.24 8.33 16.13 55 I9 Intron 0 4.48 0.62 4.14 6.45 2.02 0.56 2.20 3.12 2.79 7.24 0.00 1.08 0.00 1.06 2.61 6.30 3.00 6.39 1.45 0.00 12.01 2.84 2.67 56 I9_SR1 SilentIntronRegion 0 4.51 0.62 4.16 6.49 2.02 0.56 2.21 3.14 2.80 7.29 0.00 1.09 0.00 1.06 2.62 6.33 3.02 6.43 1.45 0.00 12.08 2.85 2.68 57 E10_Aa NovelBoundary 0 11.04 0.00 1.80 4.93 0.00 2.84 4.15 9.82 3.53 15.37 2.00 0.00 0.00 2.59 5.19 3.42 3.93 7.67 4.42 0.00 3.15 2.45 7.60 58 ER10a ExonRegion 0 14.95 6.48 9.35 15.79 16.45 4.78 8.34 13.54 19.63 28.69 1.22 3.34 1.73 7.95 11.43 8.08 5.94 14.10 20.98 3.43 30.27 13.56 17.34 59 E10a_E11a KnownJunction 0 34.30 5.66 4.14 15.05 0.00 9.77 11.08 18.32 35.99 40.24 2.00 0.00 0.00 2.18 18.54 12.73 8.98 23.92 22.12 3.26 36.20 24.80 23.90 60 ER11a ExonRegion 0 22.77 3.06 6.32 13.11 14.22 8.98 4.19 14.97 21.24 29.72 4.72 1.91 4.15 9.20 16.43 13.64 6.67 15.48 25.48 2.08 28.72 13.69 15.52 61 E11_Da NovelBoundary 0 6.82 0.00 3.67 9.22 0.00 0.00 2.25 6.24 10.94 9.83 2.68 0.00 13.80 0.00 4.82 7.86 4.58 17.16 8.38 6.07 15.38 2.82 6.83 62 E11a_E12a KnownJunction 0 7.48 0.00 3.28 4.13 10.61 0.00 0.00 1.68 5.56 6.98 5.05 5.40 0.00 2.47 4.45 4.19 0.00 0.00 9.22 3.00 0.00 2.88 8.02 63 E11a_E13a NovelJunction 0 12.67 0.00 1.21 3.53 0.00 0.00 0.00 4.19 2.95 4.27 2.16 0.00 0.00 0.00 0.00 4.19 0.00 1.91 8.47 0.00 8.77 0.00 4.35 64 I11 Intron 0 11.71 3.07 7.04 9.02 5.16 2.46 3.61 4.21 6.32 14.04 3.08 1.06 0.80 3.08 4.80 7.60 2.49 10.05 3.34 2.85 10.90 5.15 6.89 65 I11_SR1 SilentIntronRegion 0 8.52 1.68 2.64 4.82 3.87 2.46 2.87 2.66 5.32 8.82 2.79 1.92 0.40 3.28 4.37 6.14 4.09 5.12 2.96 1.98 9.10 3.44 7.88 66 I11_AR2 ActiveIntronRegion 0 14.24 4.12 10.31 12.13 6.19 2.52 4.21 5.35 7.17 18.02 3.36 0.48 0.93 3.01 5.21 8.75 1.43 13.72 3.55 3.51 12.37 6.47 6.35 67 E12_Aa NovelBoundary 0 19.86 14.73 9.67 20.58 8.40 5.79 5.79 11.87 5.06 23.29 2.37 0.00 0.00 4.89 10.38 12.30 8.23 29.56 17.60 0.00 30.89 2.51 0.00 68 ER12a ExonRegion 0 13.88 1.24 9.90 14.43 8.55 3.43 0.47 12.69 11.45 18.08 0.78 1.10 0.00 1.85 11.57 9.33 1.10 10.69 14.98 3.66 26.04 8.59 15.07 69 E12_Da NovelBoundary 0 17.48 0.00 3.58 25.27 4.33 0.00 6.01 16.39 18.92 15.66 4.32 0.00 0.00 2.65 4.45 22.05 4.77 24.21 0.00 5.88 20.76 3.12 11.52 70 E12a_E13a KnownJunction 0 10.30 0.00 1.71 12.52 7.47 0.00 1.72 5.42 7.58 6.66 0.00 0.00 0.00 4.71 6.30 3.50 0.00 3.86 9.22 0.00 26.69 3.12 3.67 71 I12 Intron 0 8.60 2.07 7.98 9.28 4.35 3.35 2.82 6.80 8.60 15.28 1.18 1.24 1.57 1.68 6.45 6.64 1.34 12.32 7.77 3.03 9.18 3.18 6.27 72 I12_SR1 SilentIntronRegion 0 8.65 2.08 8.03 9.34 4.37 3.37 2.84 6.84 8.65 15.37 1.19 1.25 1.58 1.69 6.49 6.68 1.35 12.39 7.81 3.04 9.23 3.19 6.30 73 E13_Aa NovelBoundary 0 7.19 0.00 17.53 20.38 8.06 2.90 0.00 3.45 15.86 19.31 2.68 6.15 0.00 0.00 10.26 6.75 0.00 13.06 8.38 14.64 10.50 0.00 7.60 74 ER13a ExonRegion 0 5.64 0.41 1.77 14.99 5.89 1.11 2.29 7.96 12.04 12.60 1.36 0.36 0.00 3.27 9.60 2.62 2.00 7.52 4.85 0.00 18.55 14.11 2.59 75 E13_Da NovelBoundary 0 13.04 0.00 10.64 15.95 10.95 6.47 3.62 6.74 16.23 22.21 0.00 0.00 0.00 9.36 13.35 24.35 4.30 30.30 4.33 6.39 15.07 0.00 8.19 76 E13a_E14a KnownJunction 0 6.59 2.76 0.00 3.50 3.57 2.50 0.00 12.32 6.71 6.96 0.00 5.70 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 15.69 4.96 3.84 77 E14_Aa NovelBoundary 0 9.19 2.63 3.19 9.82 3.57 0.00 0.00 9.04 16.93 8.43 2.53 5.70 0.00 2.47 0.00 0.00 3.83 12.10 0.00 0.00 0.00 2.69 4.35 78 ER14a ExonRegion 0 13.48 1.53 1.61 2.61 3.45 4.10 0.59 6.93 5.28 7.50 1.59 1.33 0.00 0.61 6.67 7.64 0.00 2.79 6.73 0.95 10.48 2.92 6.31