Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYBASC3 Gene 0 125.30 11.75 39.84 33.72 62.26 58.39 30.51 67.83 73.35 73.62 184.01 50.85 37.40 237.84 228.80 233.65 202.61 62.35 29.97 34.16 130.71 80.83 80.14 2 294072 Transcript 0 5.52 4.60 13.65 7.69 5.47 19.08 6.62 13.04 17.76 17.55 27.06 2.05 1.92 43.09 31.78 42.83 27.78 17.49 15.25 20.82 27.17 21.87 33.93 3 447532 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 426130 Transcript 0 17.94 0.03 0.00 1.57 2.59 4.55 1.70 1.27 1.34 6.83 19.04 0.00 0.00 4.06 1.37 2.04 15.33 2.18 0.04 0.00 4.06 0.00 0.00 5 ER1a ExonRegion 0 5.52 4.60 13.65 7.69 5.47 19.08 6.62 13.04 17.76 17.55 27.06 2.05 1.92 43.09 31.78 42.83 27.78 17.49 15.25 20.82 27.17 21.87 33.93 6 E1_Ab KnownBoundary 0 0.00 16.38 15.82 16.78 3.99 39.30 12.01 14.87 45.23 19.99 18.90 11.70 6.49 59.16 22.99 44.95 40.21 32.75 7.72 28.25 30.46 61.17 25.87 7 ER1b ExonRegion 0 48.20 16.12 15.76 11.67 25.61 30.59 19.32 16.35 31.97 36.48 95.79 12.10 17.27 126.86 88.81 111.07 118.11 17.67 26.69 15.96 111.25 61.93 43.78 8 E1_Da NovelBoundary 0 14.89 9.01 31.31 35.79 0.00 2.67 4.37 21.19 43.23 32.10 2.68 6.30 0.00 7.12 8.90 6.84 8.79 52.44 48.19 26.78 5.62 0.00 0.00 9 E1a_E2a KnownJunction 1 26.30 2.63 6.71 5.86 19.19 7.33 4.50 17.79 25.93 35.14 179.15 6.30 21.59 185.24 108.66 96.73 212.81 29.06 33.60 9.14 145.73 60.19 47.29 10 E1a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 4.79 0.00 0.00 4.94 0.00 0.00 4.77 0.00 0.00 3.07 0.00 2.82 20.66 11 I1 Intron 0 10.74 13.25 9.96 13.73 13.77 19.06 10.04 21.47 32.13 23.27 7.42 6.87 5.01 9.41 10.85 13.15 8.83 24.45 21.41 25.69 6.57 3.50 5.34 12 I1_AR1 ActiveIntronRegion 0 14.68 23.26 19.52 27.43 17.56 28.88 12.91 20.28 42.97 32.05 9.06 11.51 6.98 16.15 16.06 19.23 10.21 39.10 35.54 33.31 6.61 3.71 5.23 13 I1_SR1 SilentIntronRegion 0 10.58 11.14 3.86 7.14 17.84 16.61 8.42 22.55 28.39 20.24 4.55 5.65 4.15 6.13 6.87 9.83 6.96 16.70 14.24 20.44 6.62 3.94 3.98 14 I1_AR2 ActiveIntronRegion 0 2.60 5.91 9.65 7.46 13.20 10.00 9.73 28.10 28.26 21.46 5.24 6.05 7.14 5.00 8.75 6.99 10.97 20.33 12.39 26.56 4.13 6.16 6.84 15 I1_SR2 SilentIntronRegion 0 8.87 5.87 3.41 4.67 7.68 12.53 8.03 20.44 23.95 16.29 7.92 2.89 2.85 5.35 8.17 10.28 7.89 14.52 12.99 20.45 7.18 2.35 5.84 16 E2_Aa NovelBoundary 0 17.34 6.25 15.85 25.04 16.64 25.33 18.11 33.93 57.41 30.49 6.79 13.35 0.00 19.42 4.45 7.18 0.00 28.85 54.31 20.77 19.83 6.25 3.41 17 ER2a ExonRegion 0 42.09 4.13 25.35 23.59 23.69 33.93 8.83 42.19 65.29 59.50 226.37 46.27 19.40 262.52 164.49 228.95 250.28 58.86 31.22 26.66 177.97 100.83 97.22 18 E2a_E4a KnownJunction 1 67.27 5.92 42.46 24.04 32.26 40.77 16.12 69.50 111.89 60.20 132.03 6.30 21.91 338.57 197.17 355.04 210.19 86.35 32.38 43.66 181.19 126.02 151.26 19 ER3a ExonRegion 0 7.29 0.06 0.00 1.14 1.19 1.43 1.14 0.19 0.48 0.41 11.38 0.00 0.00 3.52 2.74 0.83 9.54 1.80 0.09 0.00 2.75 0.00 0.00 20 E3_Da NovelBoundary 0 9.78 0.00 2.96 5.43 0.00 0.00 2.25 2.55 4.14 12.09 5.37 0.00 0.00 9.83 4.45 0.00 4.77 6.67 13.74 9.01 14.15 0.00 12.46 21 E3a_E4a KnownJunction 0 28.60 0.00 0.00 2.00 3.99 7.67 2.25 2.34 2.20 13.24 26.69 0.00 0.00 4.59 0.00 3.25 21.13 2.57 0.00 0.00 5.37 0.00 0.00 22 I3 Intron 0 27.33 0.44 3.93 1.97 7.49 5.72 5.27 2.49 3.76 6.44 6.45 1.15 0.00 8.42 5.27 12.79 15.27 7.61 1.71 2.52 3.79 1.57 5.06 23 I3_AR2 ActiveIntronRegion 0 75.84 0.65 2.49 1.84 10.77 8.74 8.89 2.93 3.83 5.20 12.78 3.41 0.00 15.72 9.19 28.11 34.27 4.88 2.41 1.49 3.40 3.07 2.29 24 E4_Aa NovelBoundary 0 145.29 0.00 1.69 4.89 18.76 8.69 7.29 7.23 7.47 11.98 27.48 0.00 0.00 19.95 0.00 48.45 31.23 13.43 0.00 0.00 3.15 0.00 3.24 25 ER4a ExonRegion 0 70.49 12.56 34.99 33.47 62.42 69.70 34.14 58.31 100.03 77.53 250.74 102.25 40.07 295.92 229.17 274.29 284.71 78.67 38.19 28.32 185.07 115.75 104.27 26 E4a_E5a KnownJunction 0 36.23 0.00 52.13 42.75 89.30 82.23 40.41 66.09 103.47 73.82 145.35 67.67 40.58 268.53 203.72 272.75 214.12 62.55 3.76 35.22 134.24 105.26 94.92 27 I4_SR3 SilentIntronRegion 0 13.59 2.90 5.86 12.31 17.18 3.92 6.14 8.27 7.88 12.19 11.72 15.53 3.05 11.75 17.35 30.74 5.89 7.53 10.22 3.79 4.72 11.89 13.62 28 E5_Aa NovelBoundary 0 13.78 0.00 11.38 15.75 15.28 2.21 4.20 22.10 24.68 30.41 7.74 6.00 13.96 17.42 9.77 3.93 26.27 14.92 9.51 26.01 5.50 3.12 7.77 29 E5a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER5a ExonRegion 0 30.56 2.54 40.67 33.73 49.84 60.06 24.82 55.63 93.33 65.52 124.43 56.55 39.87 250.32 196.74 226.62 185.68 59.82 7.96 30.59 114.46 100.27 78.37 31 ER5b ExonRegion 0 66.52 10.49 25.19 27.63 28.80 42.73 23.13 40.97 52.36 50.15 107.13 51.80 36.33 166.90 151.59 169.75 159.86 36.63 18.01 18.49 115.44 71.98 63.77 32 E5_Db NovelBoundary 0 3.70 0.00 23.83 16.68 8.66 21.98 6.27 20.58 15.65 20.50 6.48 5.55 0.00 9.59 4.45 3.59 0.00 17.70 8.85 18.60 8.90 7.96 8.45 33 E5b_E6a KnownJunction 0 265.45 19.47 31.73 33.40 46.86 67.46 37.01 79.89 63.80 64.23 260.17 114.79 95.12 211.43 219.54 283.17 276.76 76.36 26.92 31.45 209.80 99.50 106.19 34 E6_Aa NovelBoundary 0 13.78 5.99 14.40 23.61 16.98 16.35 0.00 22.10 36.78 63.58 9.79 6.30 6.49 17.89 9.27 7.60 7.95 33.37 17.13 18.02 19.58 11.39 23.65 35 ER6a ExonRegion 0 98.96 14.47 27.35 33.99 33.52 69.59 37.32 57.82 68.35 51.94 169.86 42.04 63.78 212.69 136.51 185.00 215.92 49.88 29.92 23.16 148.56 64.09 74.61 36 E6_Da NovelBoundary 0 32.08 16.38 25.63 26.14 73.26 61.73 29.32 36.06 61.08 86.39 9.69 16.81 13.15 40.44 33.99 28.03 4.58 46.59 48.85 29.59 0.00 13.41 23.47 37 E6a_E7a KnownJunction 0 168.03 15.39 37.79 41.82 136.33 124.81 55.60 81.66 114.96 74.17 387.89 93.33 174.50 465.83 343.29 384.86 460.12 76.98 51.20 54.71 242.35 128.04 161.76 38 E7_Aa NovelBoundary 0 34.15 9.67 8.81 5.76 14.35 5.17 6.18 12.16 7.03 16.90 24.48 0.00 0.00 14.60 0.00 28.11 21.41 4.73 4.80 23.07 3.15 0.00 8.02 39 E7_Ab NovelBoundary 0 90.16 11.77 30.51 19.78 58.23 28.90 36.74 61.98 93.40 88.16 152.46 49.52 80.19 233.74 143.77 202.17 165.59 39.05 41.13 48.07 118.55 84.38 33.89 40 ER7a ExonRegion 0 83.07 10.82 35.01 28.09 71.77 69.29 41.94 67.53 99.51 74.71 261.56 73.29 94.14 336.60 230.44 260.06 300.26 52.46 37.66 43.08 179.13 99.04 88.52 41 ER7b ExonRegion 0 98.18 14.33 39.92 45.04 56.90 53.09 38.60 73.93 85.54 74.58 185.96 70.11 62.39 332.29 188.63 248.78 240.17 44.47 32.77 38.00 143.74 86.80 78.40 42 E7a_E8a KnownJunction 0 115.95 2.83 31.25 28.30 57.30 34.64 26.85 80.09 82.70 76.58 132.61 67.22 82.79 278.12 177.76 278.56 199.16 57.50 7.62 32.47 124.91 87.01 56.43 43 I7 Intron 0 8.36 4.20 13.28 7.47 10.09 7.08 4.64 10.41 12.73 25.48 4.86 2.24 2.43 6.40 7.25 8.54 6.82 14.51 16.30 8.41 4.94 4.30 6.59 44 I7_AR1 ActiveIntronRegion 0 7.54 4.70 14.44 6.18 8.52 6.33 3.94 8.59 7.64 22.64 4.87 2.97 0.78 6.30 5.54 10.69 10.60 11.66 12.44 6.78 4.61 2.61 3.19 45 I7_SR1 SilentIntronRegion 0 9.13 3.84 12.49 8.61 11.51 7.78 5.27 12.03 17.04 28.13 4.91 1.68 3.81 6.56 8.71 6.88 3.80 17.04 19.68 9.81 5.28 5.75 9.46 46 E8_Aa NovelBoundary 0 3.26 2.89 20.19 6.19 4.16 8.06 7.86 9.00 5.79 33.71 2.68 6.30 0.00 7.06 13.35 0.00 8.13 15.71 23.44 5.50 0.00 2.57 3.59 47 ER8a ExonRegion 0 187.96 13.40 53.52 43.06 89.61 72.44 38.03 93.35 90.27 96.93 231.35 59.60 43.66 291.43 317.91 300.47 241.66 82.35 34.56 43.38 148.25 94.24 94.53