Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DAK Gene 0 28.69 19.18 49.86 30.90 23.78 31.39 17.66 30.27 46.91 73.41 69.05 18.76 24.16 114.19 124.40 84.12 80.52 46.05 45.75 51.39 54.89 20.85 20.13 2 394900 Transcript 0 10.86 7.48 17.05 8.49 12.68 13.74 7.02 10.43 16.91 30.66 44.29 5.22 6.79 42.69 52.18 32.48 52.22 14.62 22.18 22.47 33.29 9.52 11.12 3 311463 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 448123 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 1 21.11 10.32 6.60 1.45 11.99 29.07 11.38 3.26 5.07 13.16 44.38 1.23 1.11 63.64 80.22 55.51 57.90 3.95 32.93 17.64 42.63 13.26 18.22 6 E1a_E2a KnownJunction 0 0.00 2.96 13.51 0.00 3.99 0.00 0.00 4.23 2.63 15.34 8.00 0.00 0.00 3.00 19.66 8.54 9.16 0.00 4.24 6.52 3.03 3.12 0.00 7 I1 Intron 0 6.36 5.61 9.26 8.80 8.30 9.30 5.02 8.75 13.41 23.81 25.69 31.39 21.46 36.10 42.49 37.15 26.80 25.50 31.05 24.30 23.86 14.77 15.32 8 I1_AR1 ActiveIntronRegion 0 6.37 5.62 9.27 8.81 8.31 9.32 5.03 8.77 13.43 23.86 25.74 31.45 21.50 36.17 42.57 37.23 26.85 25.55 31.11 24.34 23.90 14.80 15.35 9 E2_Aa NovelBoundary 0 3.78 2.43 8.28 18.28 16.81 12.83 2.25 2.55 12.99 27.61 41.43 6.30 26.30 20.66 42.65 33.07 34.03 30.39 56.85 32.60 21.87 13.66 25.35 10 ER2a ExonRegion 1 8.33 4.71 28.03 13.75 11.99 6.57 5.56 13.40 23.65 56.04 115.80 10.67 19.44 93.90 94.87 55.07 134.14 38.18 27.42 40.31 75.47 15.04 16.74 11 E2a_E3a KnownJunction 0 10.67 0.00 58.13 27.44 15.62 5.28 8.74 18.15 37.90 101.22 169.57 18.01 31.98 190.83 271.46 108.77 199.44 51.86 54.97 84.75 88.90 32.88 35.51 12 ER2b ExonRegion 1 4.23 6.10 60.66 24.53 16.05 3.67 5.96 19.88 41.38 101.50 165.26 12.99 35.18 213.57 256.76 105.51 188.15 41.57 49.37 72.34 80.44 39.59 29.37 13 ER3a ExonRegion 0 12.14 9.71 53.05 20.34 18.67 28.28 15.16 28.54 39.65 96.50 101.89 13.69 29.18 160.30 158.94 105.65 107.04 53.43 48.10 61.13 75.09 24.28 32.97 14 E3a_E4a KnownJunction 0 31.41 26.38 29.42 16.02 29.37 69.28 42.04 26.37 41.23 101.97 114.08 28.21 59.25 204.37 200.51 151.93 123.42 58.74 44.99 66.60 112.06 23.64 17.93 15 ER4a ExonRegion 0 19.85 19.11 35.25 16.74 6.75 28.85 13.48 24.42 35.31 80.01 112.65 13.50 34.86 184.80 176.17 108.34 113.24 47.28 36.50 63.98 74.07 12.84 16.72 16 E4a_E5a KnownJunction 0 27.63 12.23 48.93 21.94 3.74 8.29 19.08 17.13 47.45 82.84 65.38 12.00 18.34 175.64 160.21 106.64 135.11 48.67 34.92 63.92 93.28 13.47 29.88 17 ER5a ExonRegion 0 25.64 16.50 48.99 16.15 10.96 22.11 22.62 27.80 39.23 86.07 77.68 18.02 27.25 207.53 175.79 132.59 125.75 63.65 50.45 77.00 85.82 18.65 22.54 18 E5_Ab KnownBoundary 0 30.38 3.09 68.60 9.29 12.48 28.45 25.39 35.16 67.16 106.16 87.02 7.35 26.78 194.30 230.05 167.56 158.77 84.19 71.25 109.43 93.16 29.39 30.39 19 ER5b ExonRegion 1 12.70 9.45 57.77 15.82 6.64 20.77 12.79 29.05 47.69 88.91 100.54 5.74 33.62 175.49 190.09 131.70 135.47 50.49 37.15 69.77 80.54 20.81 30.05 20 E5a_E6a KnownJunction 1 10.52 24.21 53.25 27.34 10.53 14.48 11.88 25.51 41.00 88.11 113.61 6.30 52.76 135.97 88.76 108.26 120.15 58.41 44.42 91.79 78.83 14.76 48.57 21 I5_AR1 ActiveIntronRegion 0 4.76 0.00 0.00 0.00 0.00 5.50 0.00 0.00 0.00 0.00 1.45 2.67 11.59 6.02 13.57 4.46 7.43 0.00 23.89 3.19 1.65 3.13 8.81 22 ER6a ExonRegion 0 20.76 16.09 68.25 25.19 14.53 27.09 18.38 32.27 55.24 97.79 113.33 14.14 34.61 220.12 242.13 159.78 156.48 75.66 83.22 75.81 103.35 34.15 36.28 23 E6a_E7a KnownJunction 1 22.00 22.43 89.97 27.80 21.73 43.38 15.41 49.82 65.94 122.97 147.72 7.65 25.97 194.72 112.12 182.17 154.65 106.83 93.18 70.31 120.47 41.21 37.65 24 I6_AR1 ActiveIntronRegion 0 11.89 2.03 3.58 10.27 7.00 3.95 1.83 5.19 4.18 13.41 14.13 6.66 6.85 11.87 4.46 9.83 18.79 10.80 2.94 2.13 2.20 4.17 2.94 25 I6_AR2 ActiveIntronRegion 1 13.92 2.03 3.22 9.40 2.96 5.50 0.00 3.46 3.90 11.35 15.16 3.19 1.23 10.34 10.99 8.29 19.28 10.21 4.36 0.34 2.20 6.14 5.56 26 I6_AR3 ActiveIntronRegion 0 14.82 2.03 3.68 7.27 2.68 5.50 0.00 4.03 2.68 10.70 11.28 0.00 0.00 13.81 15.47 8.92 22.56 14.78 9.56 0.00 2.20 7.99 8.81 27 I6_AR4 ActiveIntronRegion 0 10.37 0.20 8.95 7.63 2.68 5.50 0.00 4.32 2.47 11.47 7.73 0.00 0.00 15.92 14.51 7.73 23.77 13.49 16.56 1.06 3.09 6.25 11.45 28 E7_Aa NovelBoundary 0 14.67 0.00 5.06 6.73 0.00 2.38 3.97 5.46 5.84 12.03 2.47 0.00 0.00 36.55 33.62 3.25 8.13 11.81 0.00 13.04 10.87 0.00 3.76 29 ER7a ExonRegion 0 28.22 25.65 72.92 27.06 22.00 29.93 28.08 37.70 62.00 108.65 150.44 25.83 49.77 212.27 189.48 181.13 148.61 88.40 67.35 74.68 102.69 42.85 39.25 30 E7_Da NovelBoundary 0 44.01 7.89 14.93 11.35 0.00 5.22 6.49 6.98 4.63 15.04 12.58 0.00 33.60 12.30 34.61 12.22 18.70 8.25 23.15 22.63 6.05 0.00 7.09 31 E7a_E8a KnownJunction 0 14.37 21.44 37.11 39.92 19.61 35.77 39.04 31.96 49.48 77.12 134.51 18.16 20.45 232.33 212.00 128.86 123.52 43.40 45.18 79.70 82.97 38.70 34.74 32 I7 Intron 0 11.18 4.17 8.67 7.22 6.06 4.55 3.14 7.50 8.73 11.79 12.50 21.91 25.85 26.63 31.23 25.96 15.30 10.11 9.27 8.95 16.63 5.84 6.33 33 I7_AR1 ActiveIntronRegion 0 12.60 4.17 11.29 7.77 8.04 7.46 4.05 10.50 12.43 13.53 12.50 14.53 22.42 26.72 44.48 26.71 14.18 11.96 11.16 9.18 14.38 7.68 8.93 34 I7_AR2 ActiveIntronRegion 0 9.80 7.60 11.03 14.56 8.03 2.03 4.39 13.37 13.91 23.12 23.19 13.90 24.19 39.92 60.77 33.48 25.89 13.81 19.95 11.42 33.75 7.68 10.36 35 I7_SR1 SilentIntronRegion 0 6.88 4.28 9.24 6.67 7.25 0.32 3.31 5.71 4.91 13.52 10.75 28.77 35.18 25.06 17.26 24.37 15.54 8.06 4.35 7.85 29.25 5.25 1.56 36 I7_AR4 ActiveIntronRegion 0 12.70 3.45 3.13 5.17 1.15 3.11 1.13 2.21 3.86 5.04 12.43 32.53 25.97 25.59 12.92 25.45 15.56 7.78 8.19 9.12 7.39 2.68 5.01 37 E8_Aa NovelBoundary 0 13.41 0.00 13.78 15.98 8.15 22.32 3.44 4.11 5.24 14.10 29.11 41.71 48.86 38.73 22.87 24.27 13.74 13.80 12.52 6.14 13.47 2.27 0.00 38 ER8a ExonRegion 0 13.12 21.85 39.77 26.71 10.63 23.53 22.24 31.90 44.85 80.87 133.48 36.99 50.65 184.87 163.55 99.01 134.96 66.15 61.61 61.09 70.08 30.18 19.97 39 E8_Da NovelBoundary 1 6.37 8.68 8.40 10.16 7.13 0.00 3.71 5.96 4.83 17.70 4.26 37.21 20.45 12.66 4.45 12.22 4.77 4.35 0.00 6.26 0.00 6.25 0.00 40 E8a_E9a KnownJunction 0 6.89 30.06 42.67 15.55 15.53 15.22 14.57 28.92 31.74 74.97 109.19 35.56 20.45 156.22 137.34 73.48 94.25 67.94 66.64 58.10 51.21 21.00 7.68 41 ER9a ExonRegion 0 30.10 26.75 67.06 44.29 24.18 60.32 26.29 49.21 64.89 103.26 146.54 56.18 66.21 272.43 216.91 183.01 141.59 98.56 83.42 85.18 109.46 51.38 37.87 42 E9a_E10a KnownJunction 0 56.53 45.26 104.49 59.03 31.66 60.48 20.98 60.87 80.03 137.05 184.15 68.27 59.09 262.76 165.03 150.56 141.75 111.55 62.78 84.24 135.05 56.33 24.24 43 ER10a ExonRegion 0 35.39 21.78 83.30 50.56 26.58 40.12 25.43 32.84 63.33 121.05 148.19 70.52 61.96 224.76 148.13 140.91 159.84 65.41 54.93 75.86 111.48 47.39 31.03 44 E10_Da NovelBoundary 0 27.12 3.35 7.33 5.43 11.54 7.33 3.62 6.74 18.11 27.75 9.42 12.30 6.82 32.96 45.24 35.97 20.57 25.25 3.95 17.32 24.09 8.57 4.35 45 E10a_E11a KnownJunction 0 20.67 12.89 76.79 39.92 23.51 31.97 24.95 26.25 56.16 84.86 97.66 49.97 46.91 184.77 123.49 114.41 160.64 72.25 57.04 71.46 80.19 31.11 26.55 46 I10 Intron 0 15.93 7.23 9.92 8.49 5.59 6.90 4.98 7.54 7.69 15.01 7.27 13.47 9.86 18.67 22.51 25.47 10.35 8.25 7.99 7.12 14.28 5.66 8.59 47 I10_SR1 SilentIntronRegion 0 28.15 9.08 8.01 12.06 10.84 7.64 4.92 10.77 11.30 14.34 12.15 21.36 16.81 17.00 19.29 24.62 15.57 13.27 12.64 10.35 15.83 2.26 10.03 48 I10_AR2 ActiveIntronRegion 0 17.53 9.98 15.84 10.89 5.90 9.28 7.60 9.54 9.82 22.55 8.64 15.35 8.72 26.87 33.35 38.96 12.85 10.00 9.79 9.21 20.20 10.26 12.35 49 E11_Aa NovelBoundary 0 30.30 27.36 10.02 14.35 34.47 15.96 6.40 8.17 12.56 24.07 12.42 37.21 18.99 30.96 29.67 29.74 8.98 18.24 9.22 6.52 31.63 13.90 7.94 50 ER11a ExonRegion 0 55.03 31.13 77.44 45.56 29.43 43.53 28.75 38.94 67.26 105.77 139.93 51.03 62.77 267.09 193.22 186.15 147.78 87.54 69.89 70.09 111.84 45.13 30.14 51 E11a_E12a KnownJunction 0 54.01 28.94 92.96 66.09 53.23 59.17 26.67 55.49 71.87 103.36 174.89 37.66 46.91 295.19 196.80 154.66 158.30 90.66 47.44 63.85 107.31 30.56 24.93 52 E12_Aa NovelBoundary 0 12.59 0.00 3.96 3.90 6.62 13.86 8.26 0.00 0.00 1.40 7.79 0.00 0.00 0.00 4.45 0.00 3.83 4.02 12.52 5.94 5.56 3.12 4.01 53 ER12a ExonRegion 0 32.44 25.35 69.16 37.70 21.94 59.47 22.66 38.80 57.12 84.71 124.76 41.05 30.78 213.28 200.61 131.64 141.79 69.69 61.42 77.89 84.94 35.86 35.56 54 E12_Da NovelBoundary 0 29.41 10.26 41.93 20.31 10.61 16.47 13.51 30.81 34.64 49.56 43.06 22.96 24.19 81.35 115.58 84.34 59.75 29.27 49.60 30.81 24.77 7.72 6.74 55 E12b_E13a KnownJunction 0 75.57 45.72 85.77 48.88 10.61 55.08 33.08 60.79 76.21 90.39 100.29 27.46 25.81 275.41 242.66 179.70 160.73 104.01 93.46 115.11 69.93 31.78 26.72 56 ER12b ExonRegion 0 46.99 34.77 71.32 38.43 10.70 43.09 25.68 52.72 58.67 78.79 106.12 31.61 33.30 256.45 252.41 170.30 156.46 82.41 91.10 91.49 67.43 29.17 21.14 57 ER13a ExonRegion 0 46.99 31.90 73.98 38.03 17.24 44.40 24.38 42.13 63.71 97.31 104.00 18.07 27.32 205.75 220.18 144.66 135.77 78.26 51.70 82.01 71.68 28.73 27.26 58 E13a_E14a KnownJunction 1 61.42 33.02 93.49 25.20 27.67 57.69 24.82 23.58 81.19 98.56 125.87 12.60 12.99 154.57 251.93 175.94 100.89 102.85 64.66 100.35 63.26 26.33 38.16 59 ER14a ExonRegion 1 49.08 27.80 74.52 40.66 24.08 54.60 28.93 44.73 61.58 111.00 99.34 6.80 17.71 222.03 230.69 141.27 141.11 78.76 55.88 77.93 68.40 32.46 27.14 60 E14a_E15a KnownJunction 1 102.24 35.39 105.53 61.50 36.67 104.60 31.22 52.33 83.54 138.58 84.23 0.00 6.82 232.21 284.20 180.89 127.91 63.63 78.31 75.42 79.82 44.82 29.45 61 ER15a ExonRegion 0 86.45 31.03 91.82 39.39 26.71 49.55 28.69 47.85 68.79 134.27 109.60 18.03 22.23 199.89 257.04 139.00 149.14 58.17 48.33 77.09 96.56 31.39 33.63 62 E15a_E16a KnownJunction 0 94.09 57.03 89.12 39.39 39.13 50.71 34.18 46.62 61.63 116.55 151.35 25.21 27.11 238.39 266.02 204.73 171.39 64.54 78.31 116.46 112.68 39.01 36.36 63 ER16a ExonRegion 1 64.93 46.77 103.65 40.00 64.53 57.49 41.59 56.53 72.04 127.85 126.95 26.49 18.21 246.53 289.78 166.18 194.36 90.10 62.49 102.38 96.77 27.88 21.68 64 E16a_E17a KnownJunction 0 55.57 58.81 96.51 32.96 93.89 66.67 50.79 52.74 55.15 114.62 110.45 49.07 13.80 258.46 380.62 113.39 189.81 91.74 47.06 100.99 81.48 22.17 8.45 65 ER17a ExonRegion 0 52.80 46.70 108.08 57.21 47.96 66.83 41.84 48.74 66.24 147.42 121.73 34.06 25.85 230.82 295.03 152.30 144.43 93.39 73.58 80.52 116.43 36.67 29.95 66 E17_Da NovelBoundary 0 0.00 3.03 9.49 8.29 10.87 5.74 6.40 2.55 10.21 15.18 7.37 0.00 0.00 0.00 22.13 7.60 7.29 6.63 8.28 22.75 10.07 2.57 10.93 67 E17a_E18a KnownJunction 0 63.12 30.46 103.78 58.63 35.91 44.80 37.54 35.73 57.00 124.29 129.82 30.46 39.45 182.12 309.29 227.63 162.23 103.26 71.72 88.72 95.14 35.33 37.73 68 I17_AR2 ActiveIntronRegion 0 9.66 5.69 3.48 3.89 2.72 7.67 1.61 3.08 6.76 7.88 5.52 5.90 4.01 11.10 23.26 18.16 3.66 13.47 4.75 7.58 6.81 4.77 5.02 69 E18_Aa NovelBoundary 0 5.93 3.16 14.84 17.58 0.00 10.39 4.50 6.20 14.38 24.28 7.05 6.30 12.50 25.96 0.00 24.35 0.00 11.81 24.57 12.59 22.73 3.00 3.50 70 ER18a ExonRegion 0 62.03 33.81 109.10 74.75 38.34 50.24 25.27 51.69 72.41 124.17 129.17 34.41 54.57 199.97 277.32 174.24 153.31 85.32 89.51 82.48 96.73 39.14 28.39 71 E18_Da KnownBoundary 0 3.33 3.35 17.39 22.11 62.99 32.31 28.40 30.03 43.43 40.13 12.79 5.55 33.11 32.67 13.85 31.79 16.08 20.93 17.60 22.37 13.47 8.14 19.38 72 ER18b ExonRegion 0 13.99 11.91 20.08 18.77 22.75 19.31 11.14 20.83 36.28 38.11 8.96 8.97 6.59 10.22 13.97 10.82 7.66 16.35 24.12 25.43 12.04 6.65 9.52