Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 METT5D1 Gene 0 20.64 23.01 12.44 20.91 32.90 31.92 17.77 25.81 29.31 31.22 25.86 56.68 38.10 39.88 29.95 23.83 25.09 13.19 11.86 23.72 19.15 31.64 19.74 2 406787 Transcript 0 1.78 10.82 1.97 4.43 3.86 13.20 13.34 1.19 6.26 8.22 7.13 6.30 3.33 14.57 2.97 7.43 4.68 3.11 10.07 5.85 14.67 5.20 3.67 3 436314 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 342303 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 403099 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 6 451385 Transcript 0 0.00 0.01 0.00 0.00 0.03 0.23 0.46 0.30 0.00 0.19 0.00 0.42 0.90 0.16 0.00 1.04 0.00 0.00 0.00 0.25 0.00 0.00 0.00 7 407364 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 379199 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 413327 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 303459 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 437814 Transcript 0 2.73 1.88 0.38 2.31 3.33 0.89 1.80 2.40 3.68 1.95 9.06 14.63 11.88 2.07 5.81 1.51 0.80 0.00 0.19 0.90 0.00 0.77 0.28 12 312450 Transcript 0 0.00 0.00 0.00 0.14 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 13 468295 Transcript 0 2.18 2.61 0.29 2.73 5.28 1.78 6.87 2.75 4.45 2.50 2.93 11.03 13.43 2.37 0.92 1.22 0.96 1.34 0.32 2.83 0.53 4.75 2.62 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 8.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER1d ExonRegion 0 1.14 6.52 0.00 0.33 3.49 18.53 3.63 0.97 3.40 0.67 3.59 0.00 0.00 5.30 6.84 3.70 6.20 2.58 1.59 3.02 3.85 2.44 3.36 20 E1a_E2a KnownJunction 0 0.00 5.99 0.00 1.83 7.47 32.37 4.33 5.09 8.36 2.93 13.06 0.00 0.00 0.00 0.00 4.36 8.60 6.63 0.00 12.02 3.03 5.76 8.71 21 I1_AR1 ActiveIntronRegion 0 0.00 0.00 2.45 5.45 2.68 0.31 0.00 1.73 8.65 5.16 1.93 0.00 0.00 1.62 2.90 5.94 3.30 1.85 15.93 4.26 6.61 1.04 8.81 22 ER2a ExonRegion 0 3.38 1.15 1.22 4.15 2.70 10.06 1.78 4.07 11.11 7.10 11.43 3.20 0.00 7.75 2.42 2.17 10.82 8.08 3.94 9.46 11.96 1.44 3.33 23 E2_Ab KnownBoundary 0 0.00 3.35 0.00 4.79 0.00 0.00 2.25 4.60 12.64 4.27 29.69 0.00 0.00 21.31 10.75 16.58 28.42 7.71 18.64 18.34 25.95 3.00 0.00 24 E2_Ac KnownBoundary 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 7.06 1.67 5.32 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 6.52 0.00 5.94 0.00 25 E2_Ad KnownBoundary 0 9.19 2.50 1.60 2.76 0.00 0.00 5.03 5.75 9.75 2.39 18.79 0.00 6.98 10.30 4.45 22.13 20.10 18.12 4.24 13.10 10.07 5.02 14.60 26 ER2b ExonRegion 1 3.12 3.87 3.68 3.70 3.57 2.62 5.30 9.71 22.58 9.12 35.07 0.41 2.68 41.30 10.50 26.61 33.48 14.87 18.35 24.52 28.75 10.12 6.15 27 ER2c ExonRegion 1 12.70 11.52 3.68 4.54 2.68 9.17 10.59 10.37 22.64 14.91 46.39 4.33 4.69 56.84 25.14 50.53 51.71 16.63 21.24 35.46 41.14 14.58 17.62 28 ER2d ExonRegion 0 9.52 17.55 5.90 7.54 5.69 15.14 15.01 10.21 17.62 17.80 24.39 10.87 17.07 33.82 19.06 31.62 30.13 18.35 10.19 31.69 23.34 22.56 25.13 29 E2a_E3a KnownJunction 0 6.52 28.35 9.40 3.36 0.00 23.79 12.50 6.57 18.00 11.71 26.22 6.15 29.06 21.60 4.45 15.21 26.09 15.59 8.00 21.73 10.07 17.70 22.62 30 E3_Ab NovelBoundary 0 6.59 9.27 8.54 6.56 7.22 32.77 12.23 5.87 22.60 9.62 11.00 17.41 34.25 23.66 8.90 20.93 14.31 5.31 3.48 27.04 12.91 8.82 17.24 31 ER3a ExonRegion 0 7.53 15.48 10.89 6.89 4.91 31.89 12.36 8.07 23.06 13.70 22.12 10.82 31.53 27.16 7.74 19.15 23.29 12.83 4.42 27.19 12.37 17.25 21.37 32 ER3b ExonRegion 0 7.26 15.38 11.59 12.15 11.69 23.58 16.32 8.51 27.56 22.12 40.10 23.35 32.90 37.02 12.46 38.27 56.00 11.05 6.17 27.17 21.00 18.57 26.08 33 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 12.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 4.35 34 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 35 E3a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E3a_E9a KnownJunction 0 24.82 39.80 3.37 10.82 0.00 2.73 7.86 4.85 15.74 31.80 26.74 35.86 41.88 33.90 22.25 12.05 25.62 2.40 0.00 9.01 11.43 16.90 23.82 37 ER3c ExonRegion 0 0.00 0.00 0.00 0.27 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 38 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E5_Aa NovelBoundary 0 3.78 0.00 0.00 0.00 8.66 0.00 1.94 16.88 3.21 5.91 0.00 12.30 7.47 0.00 0.00 4.02 0.00 0.00 0.00 6.07 0.00 11.08 3.33 40 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.29 0.00 15.79 18.18 7.66 2.06 4.26 0.00 0.00 0.00 0.00 1.70 0.00 0.00 2.84 41 E5_Db NovelBoundary 0 0.00 0.00 0.00 1.33 8.49 0.00 6.14 4.31 7.20 2.82 2.68 25.06 13.47 2.24 0.00 3.59 4.77 0.00 4.24 5.50 0.00 0.00 0.00 42 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.16 12.45 16.07 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.59 0.00 0.59 0.00 0.00 0.00 11.17 21.65 9.38 1.44 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 I5 Intron 0 2.67 2.70 2.54 9.02 12.14 7.19 11.54 10.35 8.41 6.20 3.19 19.48 14.74 2.79 2.63 3.27 4.71 0.86 1.65 4.62 0.64 4.79 2.95 45 I5_SR1 SilentIntronRegion 0 2.65 2.54 2.38 9.33 9.23 7.02 11.55 9.96 7.32 6.33 3.46 18.86 15.68 2.93 2.61 2.43 4.98 0.97 1.86 4.88 0.82 5.24 3.07 46 I5_AR1 ActiveIntronRegion 0 2.78 3.27 3.12 7.95 22.40 7.81 11.56 11.80 12.28 5.79 2.27 21.76 11.53 2.29 2.70 6.26 3.78 0.50 0.93 3.73 0.00 3.27 2.53 47 E6_Aa NovelBoundary 0 19.26 12.17 5.62 15.45 28.18 18.46 4.42 13.27 14.50 3.92 0.00 0.00 6.82 2.41 6.06 4.36 0.00 0.00 0.00 2.88 0.00 3.12 0.00 48 ER6a ExonRegion 1 4.27 2.70 0.22 2.12 23.56 0.66 4.34 0.00 4.86 1.84 14.26 37.83 6.30 3.81 2.57 0.00 4.27 0.00 0.31 5.16 0.00 0.07 3.90 49 E6_Da NovelBoundary 0 2.82 3.09 1.18 6.53 4.33 21.69 6.32 10.97 8.71 6.80 0.00 0.00 26.78 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E6a_E7a KnownJunction 0 3.78 6.38 1.24 5.26 19.10 2.90 0.00 0.00 10.73 2.90 10.37 30.91 0.00 4.59 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 51 ER7a ExonRegion 0 8.79 9.52 4.15 10.73 17.77 3.08 4.46 9.66 15.72 5.57 8.60 39.08 10.04 3.02 3.35 5.14 3.13 1.80 0.00 2.89 0.00 5.32 0.87 52 E7_Da KnownBoundary 0 17.78 17.37 3.61 20.94 16.30 0.00 10.20 11.79 16.00 5.91 20.06 12.60 0.00 4.59 14.59 7.78 0.00 0.00 0.00 4.86 2.29 0.00 4.35 53 ER7b ExonRegion 0 8.18 5.63 1.13 6.93 9.41 2.68 4.80 7.19 11.03 5.85 6.84 9.79 10.19 4.77 7.83 4.54 2.41 0.00 0.58 2.70 0.00 2.31 0.84 54 ER8a ExonRegion 0 0.00 0.06 0.00 0.00 0.12 0.93 1.86 1.21 0.00 0.78 0.00 1.67 3.61 0.63 0.00 4.17 0.00 0.00 0.00 1.00 0.00 0.00 0.00 55 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER9a ExonRegion 0 10.40 28.60 2.98 4.94 8.42 13.29 10.78 5.00 11.11 8.09 10.81 49.01 32.15 41.97 15.86 28.57 15.18 13.99 7.46 14.71 7.70 18.89 31.66 57 E9a_E10a KnownJunction 0 17.56 11.38 3.67 5.89 25.04 28.56 12.72 7.60 11.14 10.45 16.37 23.86 28.08 67.46 39.80 11.28 21.97 22.59 8.94 11.44 26.13 14.02 28.34 58 ER10a ExonRegion 0 8.31 20.34 8.37 14.08 16.82 26.59 20.38 16.74 34.21 24.86 37.78 61.09 32.93 90.49 36.24 48.96 58.44 38.33 27.04 28.94 57.18 29.18 43.48 59 E10a_E11a KnownJunction 0 17.11 25.92 1.39 24.07 27.67 20.95 22.79 13.72 38.71 26.65 54.91 24.61 29.22 61.28 49.69 47.17 51.80 52.98 32.85 38.03 43.00 49.11 58.39 60 E10a_E11b KnownJunction 0 3.56 21.64 3.93 8.86 7.72 26.41 26.67 2.38 12.53 16.44 14.27 12.60 6.66 29.14 5.93 14.87 9.35 6.22 20.14 11.70 29.34 10.41 7.34 61 E10a_E13a NovelJunction 0 3.78 2.57 0.00 0.00 3.31 11.58 0.00 2.55 8.45 1.64 5.37 0.00 13.47 10.54 0.00 4.36 0.00 0.00 0.00 0.00 2.78 4.96 4.01 62 E11_Aa NovelBoundary 0 3.11 0.00 8.72 1.76 0.00 0.00 1.85 0.00 4.51 1.48 9.37 5.85 0.00 2.59 0.00 7.35 8.70 2.57 0.00 0.00 2.97 3.12 3.33 63 ER11a ExonRegion 1 15.05 19.93 3.19 15.20 15.10 24.82 13.09 16.86 36.15 21.05 43.04 55.51 47.63 80.66 27.72 41.68 79.59 48.00 28.74 34.80 63.47 42.27 45.42 64 E11_Ab KnownBoundary 0 20.15 14.27 6.33 12.72 23.85 28.28 12.23 23.74 34.98 18.96 34.75 49.52 67.04 95.83 37.58 45.20 78.92 43.57 19.77 38.67 77.41 40.97 46.61 65 ER11b ExonRegion 0 16.36 36.82 14.10 15.27 36.64 35.38 12.72 25.45 37.01 35.07 74.16 70.67 38.75 102.21 39.96 65.01 74.31 54.36 34.42 50.17 73.37 35.48 51.16 66 E11b_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.74 0.00 0.00 5.61 0.00 7.69 24.76 0.00 16.42 15.20 32.98 4.77 2.36 0.00 14.57 10.87 17.88 3.84 67 E11b_E13a KnownJunction 0 7.04 43.87 2.60 16.45 19.10 64.79 12.63 25.01 32.78 32.56 40.75 22.96 0.00 107.48 41.16 78.10 43.95 66.08 27.39 38.86 55.91 37.72 48.74 68 ER11c ExonRegion 1 8.47 30.50 3.68 20.44 24.08 58.68 11.92 22.47 32.11 36.70 50.26 56.28 9.38 105.57 40.62 86.19 36.31 66.52 31.85 55.32 59.50 52.09 44.05 69 E12_Aa NovelBoundary 0 0.00 2.96 0.00 5.86 3.14 2.90 4.50 2.38 0.00 3.06 0.00 5.85 28.08 2.18 0.00 0.00 0.00 0.00 0.00 5.69 0.00 5.94 0.00 70 ER12a ExonRegion 0 2.18 2.61 0.29 2.73 5.28 1.78 6.87 2.75 4.45 2.50 2.93 11.03 13.43 2.37 0.92 1.22 0.96 1.34 0.32 2.83 0.53 4.75 2.62 71 E12_Ab KnownBoundary 1 11.34 6.71 1.83 3.30 8.66 17.21 13.82 2.46 4.20 4.38 5.00 26.86 58.76 5.30 8.90 0.00 3.46 3.81 0.00 3.07 2.84 5.82 0.00 72 ER12b ExonRegion 0 7.58 5.49 0.88 6.47 3.36 14.37 9.64 2.89 6.55 4.96 9.93 24.16 29.89 13.56 10.19 17.35 6.06 3.27 2.81 5.94 11.68 12.69 0.96 73 E12_Da NovelBoundary 0 6.82 2.89 1.83 10.82 0.00 9.26 5.34 4.68 8.07 4.19 11.48 18.91 25.97 12.18 4.45 0.00 9.35 2.11 4.14 2.62 3.09 11.76 0.00 74 E12b_E13a KnownJunction 0 3.70 2.57 0.00 10.59 4.16 2.61 3.67 2.30 6.05 3.95 7.32 25.36 0.00 23.54 0.00 4.10 3.74 4.10 4.14 5.11 12.17 0.00 4.35 75 ER12c ExonRegion 0 4.00 2.41 0.00 8.83 1.78 4.08 2.89 2.94 4.94 4.29 9.45 18.44 15.63 17.08 3.22 3.08 7.58 4.93 3.07 3.07 9.55 4.24 2.61 76 E13_Aa NovelBoundary 0 6.22 5.85 2.96 10.16 12.14 0.00 9.49 8.46 14.03 7.23 2.68 0.00 0.00 7.59 0.00 0.00 4.30 1.58 0.00 2.94 2.53 2.82 3.41 77 ER13a ExonRegion 0 13.95 23.92 6.01 14.94 19.13 47.66 18.08 12.97 37.40 35.81 55.97 52.27 33.99 80.23 30.00 54.41 54.01 41.21 26.20 41.75 48.91 36.54 35.19 78 E13_Da KnownBoundary 0 6.45 5.59 9.17 21.24 8.57 40.83 17.09 13.84 48.44 31.75 64.38 75.17 48.86 63.87 29.92 38.02 52.73 26.61 32.10 36.30 14.21 35.64 25.18 79 ER13b ExonRegion 0 23.94 29.12 7.53 22.99 41.89 61.45 25.98 25.60 59.93 38.20 63.98 88.01 45.68 65.99 28.88 54.59 74.41 31.50 15.08 39.14 33.71 47.75 29.32 80 E13_Db KnownBoundary 0 19.78 32.03 6.68 32.43 42.95 75.35 37.23 29.57 57.93 43.76 93.76 75.02 25.65 63.04 38.57 91.17 68.35 18.78 9.04 32.85 48.80 65.09 37.30 81 E13b_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82 ER13c ExonRegion 0 18.49 29.93 12.76 28.22 56.66 45.46 26.91 34.49 41.25 48.45 30.20 111.51 76.53 49.45 34.70 23.45 21.34 7.59 12.48 28.14 13.47 52.41 19.24 83 E13_Ab KnownBoundary 1 38.30 19.67 29.06 53.27 14.60 50.77 20.93 47.32 52.92 44.54 17.16 144.05 33.93 26.72 62.43 11.88 16.92 6.30 12.99 17.64 5.87 55.42 7.68 84 ER13d ExonRegion 1 30.45 30.38 16.02 46.90 59.14 51.86 26.29 57.83 50.57 56.07 13.39 93.11 58.50 36.65 50.33 11.50 10.76 7.06 8.17 27.43 9.94 61.32 19.39 85 E13_Dc KnownBoundary 1 59.71 60.52 19.69 50.34 92.44 84.50 41.82 63.66 47.83 64.41 10.58 56.57 66.39 46.32 85.54 10.94 13.00 5.43 3.58 38.29 12.66 91.61 35.43 86 ER13e ExonRegion 0 54.80 39.51 32.46 38.42 49.21 48.45 23.20 51.73 37.29 47.85 29.53 48.90 28.31 48.47 61.61 30.47 30.46 18.56 19.45 34.46 29.37 39.88 28.09