Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KBTBD4 Gene 0 22.14 30.13 24.01 29.55 26.46 48.44 23.23 44.40 38.84 55.34 55.86 17.18 10.56 54.83 43.42 54.75 49.11 63.98 34.94 47.80 38.24 29.34 29.04 2 357777 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 395286 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 359900 Transcript 0 0.00 4.74 18.33 11.04 3.99 9.31 7.15 25.73 26.49 38.96 11.00 0.00 0.00 4.09 3.03 16.32 21.97 20.91 11.25 13.55 16.15 7.13 3.88 5 430070 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 395288 Transcript 0 3.99 4.32 3.97 3.54 4.51 4.64 3.95 7.53 8.28 9.07 13.15 0.00 0.00 4.46 8.10 7.56 13.48 9.23 6.33 5.72 3.81 2.84 5.15 7 IG40 Intergenic 0 5.06 4.86 0.00 0.00 2.13 16.07 3.17 0.00 0.00 0.00 0.00 0.00 0.00 3.20 6.53 2.37 0.00 0.00 5.08 5.09 5.27 0.00 2.34 8 IG40_AR1 ActiveIntergenicRegion 0 5.22 5.02 0.00 0.00 2.20 16.59 3.27 0.00 0.00 0.00 0.00 0.00 0.00 3.30 6.74 2.44 0.00 0.00 5.24 5.25 5.44 0.00 2.42 9 ER1a ExonRegion 0 4.28 3.16 4.43 1.80 2.73 11.31 1.72 0.18 1.34 3.39 10.90 0.00 0.00 5.15 4.75 1.77 6.95 3.38 5.15 2.44 4.27 4.79 5.87 10 E1_Ab KnownBoundary 0 20.82 12.63 15.17 7.23 11.04 29.07 9.67 6.70 14.21 11.09 30.43 0.00 0.00 23.25 19.16 10.77 16.74 11.19 17.41 14.45 13.53 15.61 19.63 11 ER1b ExonRegion 0 80.72 64.96 19.23 28.70 61.24 105.49 41.41 27.66 36.02 51.67 155.92 0.00 0.65 61.81 81.07 167.18 126.08 113.28 39.64 93.44 75.05 40.92 75.70 12 E1_Da KnownBoundary 0 12.67 33.15 11.12 9.92 24.79 42.87 9.89 4.44 14.50 12.09 46.85 0.00 0.00 15.19 38.82 32.81 47.59 22.18 18.35 20.71 19.95 5.02 12.55 13 E1a_E2a KnownJunction 0 177.96 129.65 18.66 50.14 100.68 203.24 86.47 58.61 67.04 81.31 243.38 0.00 0.00 100.71 138.45 312.40 229.27 197.32 65.32 177.31 123.86 64.05 112.76 14 ER1c ExonRegion 0 7.98 8.64 7.94 7.09 9.02 9.27 6.13 5.81 12.20 13.51 21.19 0.00 0.00 8.92 11.74 15.12 22.19 14.27 12.65 11.45 7.62 5.68 10.29 15 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.77 9.24 4.37 4.62 5.11 0.00 0.00 0.00 4.45 0.00 4.77 4.19 0.00 0.00 0.00 0.00 0.00 16 I1 Intron 0 1.16 8.95 11.22 7.45 9.82 10.93 4.37 14.18 17.73 13.01 6.03 5.19 2.99 8.33 5.85 9.54 6.36 10.45 13.44 17.17 12.73 9.56 6.46 17 I1_AR1 ActiveIntronRegion 0 1.17 8.99 11.26 7.48 9.86 10.97 4.39 14.23 17.79 13.06 6.05 5.20 3.00 8.36 5.88 9.57 6.38 10.48 13.49 17.24 12.78 9.59 6.49 18 E2_Aa NovelBoundary 0 13.11 22.76 16.91 13.48 24.70 24.19 11.97 26.78 29.34 36.51 2.68 0.00 13.64 11.89 18.67 15.38 27.40 21.06 26.73 26.08 25.76 13.35 15.96 19 ER2a ExonRegion 0 25.06 44.09 29.66 36.18 35.09 72.59 34.64 58.95 68.08 90.80 99.44 17.89 10.59 80.65 57.74 101.86 83.62 119.24 48.85 79.70 67.35 44.91 47.36 20 E2_Da KnownBoundary 0 52.82 43.15 42.72 40.72 33.96 40.03 16.78 62.10 60.76 80.45 82.81 6.30 40.91 86.47 34.12 64.26 75.08 117.64 63.91 71.01 68.02 43.84 76.14 21 E2a_E2b KnownJunction 0 0.00 0.00 27.67 50.01 0.00 0.00 0.00 73.11 80.67 89.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 113.08 0.00 0.00 0.00 0.00 0.00 22 E2_Ab KnownBoundary 0 24.82 22.04 17.53 21.58 20.97 31.12 19.52 47.28 43.49 64.55 41.22 24.16 19.64 36.79 15.20 47.68 28.89 47.84 36.14 47.30 23.60 28.84 35.25 23 ER2b ExonRegion 0 82.97 78.09 63.47 57.51 53.51 69.68 38.13 112.35 107.70 159.19 162.75 38.97 66.60 199.77 117.21 130.18 132.04 180.71 113.40 118.72 129.58 74.59 102.20 24 ER2c ExonRegion 0 60.86 65.24 56.54 52.99 41.94 56.51 32.69 93.65 99.44 138.87 122.17 46.30 31.59 163.37 91.89 98.08 102.26 129.27 63.77 82.28 104.83 58.17 66.52 25 E2_Db KnownBoundary 0 28.60 35.72 28.15 27.77 24.28 19.53 22.92 29.37 43.17 55.55 69.28 51.77 21.43 89.00 56.25 47.77 70.78 41.79 27.29 43.46 57.08 22.47 15.79 26 E2b_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E2_Ac KnownBoundary 0 30.67 22.10 36.72 30.43 31.83 40.83 31.97 46.04 51.07 48.32 64.65 12.15 0.00 37.91 49.94 49.56 79.66 74.28 22.78 47.81 29.59 50.27 43.36 28 E2c_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER2d ExonRegion 0 41.45 43.38 55.96 49.86 31.44 39.58 36.19 77.06 87.90 112.21 102.77 31.75 14.85 116.12 86.07 72.32 106.18 108.56 32.65 71.28 77.68 55.91 47.48 30 ER2e ExonRegion 0 44.56 44.29 58.48 48.76 32.41 47.68 32.14 69.81 94.14 101.25 112.43 21.41 4.17 115.13 87.84 93.62 113.88 103.78 51.67 82.86 86.92 58.92 53.68 31 E2d_E2e KnownJunction 0 0.00 9.47 36.66 22.08 7.98 18.63 14.31 51.47 52.98 77.93 22.01 0.00 0.00 8.18 6.06 32.64 43.95 41.83 22.49 27.10 32.31 14.27 7.77 32 E2_Ae KnownBoundary 0 56.68 53.67 60.49 54.11 20.88 66.89 35.46 88.14 97.11 128.70 115.24 37.51 6.82 95.36 60.33 111.42 135.11 97.08 83.30 116.97 98.23 48.31 29.79 33 ER2f ExonRegion 0 49.95 37.82 59.55 52.33 32.64 57.95 29.39 77.78 97.82 112.63 117.91 28.57 0.00 127.98 81.24 102.84 112.23 111.97 58.61 91.49 86.39 59.17 52.86 34 ER2g ExonRegion 0 44.87 44.43 60.90 53.08 22.21 59.05 27.14 92.21 102.45 121.57 116.17 34.20 6.33 130.25 73.55 109.82 113.72 114.38 67.21 98.19 99.17 51.67 45.37 35 ER2h ExonRegion 0 50.09 63.04 59.23 57.24 18.73 73.35 36.19 93.91 99.22 132.28 133.37 34.64 18.76 129.93 58.03 113.93 127.63 118.87 88.13 112.06 109.45 67.37 42.09 36 ER2i ExonRegion 0 41.40 69.00 59.39 55.15 52.15 117.60 37.29 111.51 82.47 133.41 130.88 45.46 31.88 123.76 75.05 122.32 108.89 116.56 92.64 93.24 87.73 78.78 62.54 37 E2_De NovelBoundary 0 3.11 2.50 5.50 5.26 7.56 5.17 4.15 3.90 21.38 8.00 2.68 6.15 12.99 10.01 0.00 0.00 9.07 1.66 8.38 14.25 0.00 3.12 0.00 38 E2e_E3a KnownJunction 0 40.53 95.25 64.75 71.09 108.74 153.49 51.01 104.04 80.53 105.84 147.56 24.46 61.20 128.91 110.39 138.60 84.90 127.14 93.27 72.16 80.50 55.29 69.31 39 E3_Aa NovelBoundary 0 3.56 0.00 7.27 2.06 13.92 0.00 5.56 13.97 3.67 17.94 4.32 0.00 6.66 8.59 4.45 0.00 3.55 4.39 0.00 9.33 0.00 3.12 0.00 40 ER3a ExonRegion 0 37.62 65.04 52.98 73.98 60.54 123.79 51.63 107.47 71.30 129.05 115.63 54.02 45.59 142.13 94.82 97.66 100.04 111.80 88.00 103.60 67.16 59.37 59.12 41 E3_Da NovelBoundary 0 0.00 0.00 22.26 4.30 0.00 0.00 5.34 20.99 19.33 8.60 2.47 0.00 6.17 2.24 4.57 15.04 8.13 12.56 8.38 11.70 5.00 6.25 7.85 42 E3a_E4a KnownJunction 1 50.31 89.98 50.56 66.46 74.70 116.47 72.25 139.94 70.05 149.49 97.87 73.52 56.17 182.59 46.11 106.72 93.78 118.93 82.17 114.80 105.58 54.87 66.16 43 I3 Intron 0 9.27 9.37 8.21 10.04 17.13 9.27 9.52 13.03 14.06 14.79 8.47 11.44 10.26 9.19 10.16 8.35 12.98 6.92 6.08 11.71 2.97 4.92 6.27 44 I3_AR1 ActiveIntronRegion 0 11.05 10.34 9.78 11.96 19.34 10.80 10.98 15.52 16.75 17.62 9.31 13.64 12.22 10.79 11.28 9.55 15.46 8.24 7.25 13.39 3.54 5.58 6.29 45 E4_Aa NovelBoundary 0 13.85 12.70 12.77 29.53 20.37 13.57 17.53 23.12 30.82 11.36 12.11 0.00 6.82 2.47 13.60 11.62 8.32 14.59 19.20 15.79 6.12 30.43 14.77 46 ER4a ExonRegion 0 17.24 21.71 18.05 24.18 20.98 35.27 18.27 33.94 25.37 36.26 33.22 13.64 7.60 36.58 33.81 34.36 30.46 43.26 25.01 33.17 23.93 20.61 19.16