Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MDK Gene 0 235.54 738.33 880.62 786.88 857.85 461.42 475.36 456.03 193.71 1208.77 3.91 3.66 5.98 5.55 61.51 0.84 1.55 1221.39 1132.55 359.14 350.51 143.82 80.47 2 405308 Transcript 0 2.41 2.40 1.54 2.52 2.07 5.67 3.16 4.17 2.92 1.58 0.00 0.00 0.00 1.45 0.00 0.00 0.92 1.73 0.56 3.06 5.24 1.76 3.03 3 441869 Transcript 0 5.33 10.44 0.03 7.15 4.10 3.91 5.18 0.00 2.36 11.13 0.00 0.00 0.00 0.04 2.10 0.00 0.00 15.78 0.60 6.01 0.33 2.23 1.36 4 490240 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 359803 Transcript 0 0.00 6.64 6.89 5.76 0.00 0.00 3.80 11.21 0.00 18.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.68 12.52 8.50 2.53 2.76 4.35 6 405994 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 395569 Transcript 0 0.13 4.70 0.81 0.93 1.00 4.36 6.11 0.00 0.54 4.12 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.78 2.39 1.60 8.40 1.17 0.92 8 395566 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 481047 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 405098 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 430827 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 489525 Transcript 0 27.44 123.22 95.42 227.82 120.56 71.73 60.46 62.68 24.61 132.89 1.32 0.53 0.00 1.14 2.66 0.12 0.88 78.15 92.07 43.79 14.96 3.28 3.42 13 407067 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 395565 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 ER1a ExonRegion 0 2.41 2.40 1.54 2.52 2.07 5.67 3.16 4.17 2.92 1.58 0.00 0.00 0.00 1.45 0.00 0.00 0.92 1.73 0.56 3.06 5.24 1.76 3.03 16 E1_Ab KnownBoundary 0 0.00 9.34 5.97 4.93 4.16 0.00 5.96 7.43 7.06 9.16 0.00 0.00 0.00 4.83 0.00 0.00 0.00 9.04 4.80 5.69 11.06 9.12 7.34 17 ER1b ExonRegion 0 3.96 10.76 9.98 8.65 1.81 3.42 6.79 7.26 8.51 5.47 0.47 0.00 0.72 1.30 0.87 0.00 0.00 2.40 8.79 7.57 12.90 7.86 7.06 18 E1_Ac KnownBoundary 0 0.00 5.92 1.27 6.69 0.00 0.00 3.31 4.60 4.63 3.73 2.68 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 6.52 0.00 0.00 0.00 19 E1_Ad KnownBoundary 0 27.04 55.38 28.50 7.52 26.66 14.48 39.39 8.63 8.65 16.71 0.00 0.00 0.00 0.00 4.45 0.00 0.00 20.40 8.38 5.24 16.25 5.14 8.19 20 ER1c ExonRegion 0 22.07 63.33 34.66 13.43 34.40 9.43 38.02 14.07 15.53 27.69 1.93 0.00 4.69 0.00 4.97 0.00 0.00 30.36 16.84 15.50 22.35 5.66 5.87 21 ER1d ExonRegion 0 65.30 129.67 77.99 26.93 68.87 32.05 68.86 29.23 19.57 92.50 0.79 0.00 0.65 1.91 7.47 0.00 0.00 124.96 66.45 39.11 27.23 14.02 13.81 22 E1_Da KnownBoundary 0 0.00 2.89 1.21 0.00 0.00 0.00 3.75 1.60 4.86 7.39 2.58 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 23 E1a_E2g KnownJunction 0 6.08 33.15 48.46 16.91 11.12 9.60 9.41 18.57 13.72 40.43 0.00 0.00 0.00 0.00 4.45 0.00 0.00 44.69 21.93 11.19 16.56 10.47 4.18 24 ER1e ExonRegion 0 1.09 8.03 2.78 2.02 2.83 3.79 4.88 3.42 1.11 11.98 0.34 0.00 0.00 0.58 0.60 0.00 0.00 7.90 10.94 4.68 1.57 0.21 1.08 25 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 3.57 2.21 4.33 1.85 0.00 1.67 0.00 0.00 0.00 2.18 0.00 0.00 0.00 6.55 8.66 3.00 2.90 0.00 0.00 26 E1b_E2g KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E1_Dc KnownBoundary 0 0.00 8.35 1.60 6.49 0.00 2.90 5.79 2.42 0.00 7.95 0.00 0.00 0.00 0.00 5.44 0.00 0.00 10.90 0.00 5.69 0.00 0.00 3.84 28 E1c_E2g KnownJunction 0 0.00 6.64 6.89 5.76 0.00 0.00 3.80 11.21 0.00 18.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.68 12.52 8.50 2.53 2.76 4.35 29 ER1f ExonRegion 0 2.12 8.13 6.43 9.20 5.35 5.50 11.25 6.91 0.00 24.37 0.00 0.00 0.00 1.62 5.80 0.00 0.00 24.48 11.95 10.64 4.41 2.08 7.34 30 ER1g ExonRegion 0 0.00 8.64 0.06 5.14 3.88 2.93 6.02 0.00 1.51 11.33 0.00 0.00 0.00 0.08 4.21 0.00 0.00 13.40 1.19 6.28 0.66 1.46 2.72 31 E1d_E2g KnownJunction 0 10.67 12.23 0.00 9.16 4.33 4.88 4.33 0.00 3.21 10.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.16 0.00 5.75 0.00 3.00 0.00 32 ER2a ExonRegion 0 0.26 9.41 0.00 0.00 2.01 8.71 10.10 0.00 1.08 7.02 0.00 0.00 0.00 0.00 2.54 0.00 0.00 1.62 4.78 3.19 16.80 2.34 1.84 33 ER2b ExonRegion 0 121.61 268.61 73.14 26.56 45.33 297.60 302.28 33.78 24.84 124.98 3.04 0.00 0.00 1.58 34.23 0.00 0.00 94.29 316.26 107.05 131.03 54.59 70.06 34 E2_Ac KnownBoundary 0 340.88 489.72 61.91 76.41 159.85 622.99 624.20 59.48 36.52 111.42 2.68 0.00 0.00 2.35 0.00 0.00 0.00 275.33 595.78 175.84 248.90 104.40 147.93 35 E2_Ad KnownBoundary 0 162.25 316.26 200.97 74.52 67.83 288.41 217.63 65.68 42.94 298.28 2.68 0.00 0.00 0.00 15.20 0.00 0.00 220.03 165.37 132.44 87.29 28.11 34.83 36 E2_Ae NovelBoundary 0 166.40 424.27 166.73 62.43 139.47 396.65 307.95 55.94 25.64 232.36 7.42 0.00 0.00 0.00 13.23 0.00 0.00 377.68 301.94 133.65 115.09 31.17 27.40 37 ER2c ExonRegion 0 232.65 588.80 229.14 75.59 121.23 600.22 533.35 79.38 52.06 357.57 8.33 0.00 0.00 1.00 55.57 0.00 0.00 395.28 581.21 226.84 236.64 90.39 106.62 38 E2_Af KnownBoundary 0 7.56 19.73 5.06 2.06 8.49 17.15 15.77 2.30 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.02 0.00 3.15 0.00 0.00 39 ER2d ExonRegion 0 474.59 1291.79 443.49 293.96 408.57 1013.24 905.79 171.78 99.47 693.44 8.92 0.00 0.00 3.00 100.43 0.00 0.00 1201.18 933.07 348.12 343.10 93.44 124.92 40 E2_Da KnownBoundary 0 11.34 29.67 23.39 5.86 23.43 40.66 48.76 4.68 1.79 52.03 0.00 0.00 0.00 2.41 0.00 0.00 0.00 37.02 37.37 3.26 3.15 0.00 0.00 41 E2a_E2g KnownJunction 0 1345.35 3004.73 935.98 845.95 1613.58 1998.28 1998.50 431.73 189.70 1353.82 2.32 0.00 0.00 9.30 137.34 0.00 0.00 2760.01 1821.13 610.60 567.12 93.81 173.71 42 E2a_E3a NovelJunction 0 6.82 3.29 41.22 2.00 8.66 19.87 96.58 0.00 4.86 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.65 0.00 0.00 0.00 0.00 0.00 43 ER2e ExonRegion 0 680.20 1886.02 666.07 500.86 795.37 1362.28 1297.98 284.98 142.35 1043.32 7.13 0.00 0.00 5.89 132.55 0.00 0.00 1931.71 1292.26 465.16 460.85 83.47 131.97 44 ER2f ExonRegion 0 670.51 1872.93 680.33 516.81 857.31 1339.04 1285.57 296.60 138.33 1062.72 4.64 0.00 0.00 8.12 120.69 0.00 0.00 1992.98 1311.73 450.64 448.23 69.59 120.99 45 ER2g ExonRegion 0 6.97 36.99 22.01 10.80 19.66 15.32 15.74 6.07 2.90 38.24 0.00 0.00 0.00 1.07 1.46 0.00 0.00 25.97 24.03 5.76 4.11 0.02 0.02 46 E2_Db KnownBoundary 0 9.56 54.27 58.40 23.34 14.86 17.72 7.82 20.58 5.79 93.40 0.00 0.00 0.00 4.47 4.45 0.00 0.00 45.89 15.81 20.84 5.81 0.00 0.00 47 E2b_E2g KnownJunction 0 0.00 28.22 10.70 16.85 14.69 2.44 0.00 6.82 3.53 7.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 4.80 5.56 9.08 0.00 0.00 48 ER2h ExonRegion 0 12.69 48.71 59.30 30.07 31.75 27.86 29.09 23.46 8.74 107.15 0.91 0.00 0.00 2.01 6.11 0.00 0.98 72.77 51.24 18.69 11.10 1.14 2.58 49 E2_Ag KnownBoundary 0 32.89 108.40 114.34 46.68 76.74 65.13 75.12 55.94 16.29 156.95 2.68 0.00 0.00 7.24 8.90 0.00 0.00 90.58 76.61 28.32 14.95 0.00 0.00 50 ER2i ExonRegion 0 268.41 726.42 670.50 464.73 386.72 501.54 468.42 278.14 130.76 976.05 0.94 0.00 0.00 3.61 40.81 0.00 0.00 1350.49 607.06 262.18 343.14 46.96 53.28 51 E2c_E3a KnownJunction 0 137.80 318.82 623.25 320.57 202.29 175.41 199.00 197.28 132.43 839.92 0.00 0.00 0.00 4.77 45.86 0.00 4.21 465.44 440.30 278.49 495.58 49.23 27.32 52 E2c_E4a KnownJunction 0 0.00 0.00 1.63 1.86 0.00 0.00 2.12 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 53 E2c_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER3a ExonRegion 0 230.13 444.48 1024.80 653.21 216.07 197.23 195.64 428.59 213.90 1577.79 5.76 1.70 0.00 7.51 94.24 0.00 0.00 1225.52 938.20 587.80 710.77 129.59 99.37 55 E3_Da KnownBoundary 0 347.77 485.05 1234.11 863.56 176.15 164.56 180.98 515.64 211.37 1611.50 7.32 6.30 0.00 7.18 77.01 0.00 0.00 1314.65 1019.98 726.80 579.04 128.47 129.41 56 E3a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E3_Db KnownBoundary 0 153.21 391.84 1248.36 912.54 198.64 176.15 132.00 536.63 261.72 1745.84 10.11 0.00 0.00 7.36 139.56 0.00 0.00 2104.55 1518.35 695.74 452.40 174.52 227.49 58 ER3b ExonRegion 0 252.43 530.63 1646.24 1138.19 209.96 207.59 185.53 701.64 316.44 2371.80 12.37 4.33 0.00 11.69 160.73 0.00 0.00 2523.78 1697.16 938.44 724.87 194.74 234.74 59 ER3c ExonRegion 0 374.73 856.14 2114.35 1420.22 713.60 512.33 376.58 904.61 348.93 2489.65 5.24 2.14 4.98 10.31 175.03 0.00 0.00 3173.35 1964.91 826.32 618.11 214.95 184.61 60 E3c_E4a KnownJunction 0 981.66 1627.74 2625.69 1843.32 2126.74 1292.32 1000.59 1092.32 450.83 2941.84 2.58 0.00 20.29 12.01 120.53 0.00 0.00 3097.40 1517.60 988.93 832.08 246.10 153.40 61 ER4a ExonRegion 0 859.79 2362.71 2874.48 2144.43 2263.27 1929.04 1534.27 1318.08 545.70 3644.38 10.09 4.61 8.84 10.52 156.63 1.94 0.00 3716.61 2217.14 1120.92 932.90 360.85 166.64 62 E4_Ab KnownBoundary 0 1758.53 4455.72 3336.10 2253.89 2061.97 1793.97 2092.69 1634.46 577.60 4354.78 14.21 0.00 17.86 14.42 168.37 0.00 0.00 4170.75 3204.52 1342.39 1110.39 417.61 160.57 63 ER4b ExonRegion 0 958.08 5103.29 3294.06 2263.65 1800.62 1603.03 2018.31 1712.08 649.72 4583.01 6.41 4.07 19.96 12.77 223.68 0.00 0.45 4763.75 4341.40 1395.24 1228.55 517.49 259.98 64 E4_Ac KnownBoundary 0 546.76 6357.29 2966.60 2197.32 2838.29 2231.04 3237.21 1587.39 670.02 4257.22 5.05 12.60 34.09 9.65 266.89 0.00 0.00 3994.37 5307.45 1538.42 1127.87 668.67 328.39 65 ER4c ExonRegion 0 315.10 3731.56 2993.40 2090.09 4003.81 2318.31 3180.56 1725.89 712.81 4607.08 13.94 7.08 32.97 15.65 247.75 0.00 4.20 3803.90 3777.17 1517.53 1256.51 521.38 252.46 66 E4_Da KnownBoundary 0 52.16 181.61 88.55 138.31 159.17 124.64 64.12 58.20 13.25 115.96 0.00 0.00 0.00 0.00 9.64 0.00 0.00 48.00 60.80 77.66 6.24 8.21 4.10 67 E4a_E5a KnownJunction 0 275.16 2330.70 3104.27 2021.59 6316.81 2586.92 3843.83 1854.45 758.99 4820.38 19.69 5.85 32.95 20.07 255.15 0.00 3.93 3317.27 3161.79 1575.43 1432.31 420.12 241.49 68 E4_Db KnownBoundary 0 38.30 112.55 51.21 67.46 79.71 51.33 49.51 15.98 4.63 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.64 68.24 15.60 2.97 2.82 4.35 69 ER4d ExonRegion 0 41.75 143.18 77.59 118.08 114.81 95.19 62.95 43.68 7.75 91.91 0.00 0.00 0.00 1.62 5.93 0.00 0.00 41.57 77.75 59.77 7.31 7.48 2.94 70 ER4e ExonRegion 0 19.63 65.47 39.60 75.09 63.96 31.82 26.61 22.84 7.60 58.85 0.00 0.00 0.00 0.73 0.28 1.28 0.39 20.65 39.16 28.03 2.25 4.04 1.55 71 E4_Dc KnownBoundary 0 47.34 142.34 96.00 216.02 216.38 54.80 50.74 65.51 30.56 144.28 0.00 0.00 0.00 2.47 0.00 4.36 0.00 66.70 112.29 76.83 5.44 9.25 0.00 72 ER4f ExonRegion 0 54.89 243.08 180.40 438.85 232.96 135.34 108.06 120.30 49.21 244.07 2.65 1.06 0.00 2.27 5.33 0.23 1.76 130.31 148.94 87.57 23.99 6.56 6.84 73 E4_Dd NovelBoundary 0 94.98 333.62 269.86 542.65 239.64 151.39 118.62 174.52 56.54 357.96 0.00 0.00 0.00 0.00 4.45 0.00 0.00 174.31 207.25 135.95 8.77 7.41 16.22 74 E4d_E5a KnownJunction 0 0.00 3.35 10.44 16.78 8.15 8.12 12.85 5.05 0.00 21.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.99 35.20 0.00 5.93 0.00 0.00 75 I4 Intron 0 84.62 197.52 202.19 403.89 187.89 154.12 91.27 125.42 42.45 244.41 0.00 5.35 1.84 1.35 4.20 0.00 0.85 94.40 130.62 81.25 9.60 3.74 8.28 76 I4_AR1 ActiveIntronRegion 0 85.05 198.47 203.19 405.91 188.82 154.85 91.73 126.05 42.67 245.62 0.00 5.38 1.85 1.35 4.22 0.00 0.85 94.87 131.21 81.66 9.65 3.76 8.32 77 E5_Aa NovelBoundary 0 33.27 365.72 304.10 724.92 835.65 299.94 226.42 206.44 84.87 402.93 0.00 6.30 0.00 2.12 0.00 0.00 0.00 133.31 239.72 136.78 22.80 10.59 4.35 78 ER5a ExonRegion 0 680.64 1829.34 2957.24 2837.37 3432.70 1323.60 1402.11 1647.57 713.56 4161.16 12.27 19.16 28.59 17.52 189.56 4.31 6.81 4093.85 4447.76 1106.14 1249.20 587.04 282.15 79 E5_Da KnownBoundary 0 4281.50 9687.75 2532.52 3135.40 14822.50 5209.67 6896.58 1020.36 435.15 2417.71 11.85 36.76 46.75 34.61 395.45 15.12 4.30 2805.15 8547.45 793.21 1343.10 951.63 538.39 80 ER5b ExonRegion 0 2181.07 5237.23 1853.83 2305.92 8097.98 2918.38 3668.53 754.69 318.20 1806.45 7.97 21.92 30.49 18.88 224.30 9.85 3.09 2325.16 5200.31 488.56 857.66 543.80 340.65 81 ER5c ExonRegion 0 33.86 192.03 51.29 84.50 145.64 52.66 103.65 42.22 11.82 108.30 1.93 0.00 0.67 2.78 2.49 0.00 0.00 56.49 62.80 35.26 28.33 5.95 5.87 82 ER5d ExonRegion 0 1.46 12.20 2.53 8.09 9.53 5.50 8.11 4.11 0.00 13.12 0.24 0.00 0.00 0.00 0.00 0.00 0.00 7.16 4.38 1.06 2.75 2.08 0.00 83 ER5e ExonRegion 0 0.00 6.10 0.00 2.27 3.57 4.28 1.32 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 1.47 1.39 0.00 84 IG16_SR1 SilentIntergenicRegion 0 0.56 4.58 0.50 1.90 3.88 1.07 1.75 1.07 4.57 2.26 0.00 0.00 0.00 0.00 0.46 1.34 0.00 17.44 3.58 0.48 0.00 0.00 0.00