Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO3 Gene 0 76.28 109.06 57.36 94.85 134.28 193.57 102.56 147.21 156.09 167.79 41.79 66.32 64.41 69.69 55.29 46.30 54.18 57.56 28.25 69.65 46.23 91.18 52.25 2 448981 Transcript 0 15.63 21.04 7.96 14.76 18.86 23.59 36.64 24.47 21.10 21.24 17.38 28.76 27.28 15.89 16.31 11.26 13.40 3.45 3.43 8.61 7.16 19.41 11.59 3 265651 Transcript 0 0.00 2.03 0.61 0.68 4.01 3.67 1.32 0.86 0.00 1.15 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 4 321458 Transcript 0 10.29 21.30 9.43 18.56 29.82 44.31 18.47 26.12 40.24 30.81 10.63 1.66 2.88 4.67 0.77 13.11 19.99 22.30 4.04 19.42 19.57 31.70 11.19 5 415436 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 2.40 2.03 0.74 0.73 8.21 12.35 6.18 1.04 6.09 0.84 2.45 0.00 0.00 0.32 0.39 3.76 0.22 4.19 3.82 2.98 6.02 5.69 1.96 7 ER1b ExonRegion 1 26.97 64.01 11.07 22.98 51.75 150.51 70.67 29.06 59.52 55.22 24.60 2.04 5.65 28.03 23.83 42.12 47.14 50.17 11.95 50.30 40.10 51.23 35.39 8 E1a_E2a KnownJunction 0 3.78 27.82 8.81 25.54 11.63 37.82 33.56 27.19 55.90 38.22 23.43 12.45 18.34 6.65 0.00 14.87 8.32 15.13 0.00 19.81 17.54 5.20 16.13 9 I1 Intron 0 3.60 6.43 3.02 4.94 3.39 8.83 6.06 5.89 15.14 10.48 6.39 5.06 12.22 19.06 3.27 16.64 16.87 10.19 1.71 9.53 9.44 7.00 9.00 10 I1_AR1 ActiveIntronRegion 0 3.61 6.44 3.03 4.95 3.39 8.85 6.07 5.90 15.17 10.50 6.41 5.07 12.24 19.10 3.28 16.67 16.90 10.21 1.71 9.54 9.45 7.01 9.02 11 I1 Intron 1 15.22 7.85 6.08 10.28 16.39 10.74 12.52 19.89 13.97 14.80 0.77 21.23 23.88 10.08 3.00 7.12 6.15 3.56 1.70 7.37 0.29 6.38 8.60 12 I1_AR1 ActiveIntronRegion 1 15.26 7.87 6.09 10.30 16.43 10.77 12.55 19.95 14.01 14.84 0.77 21.28 23.94 10.10 3.01 7.14 6.17 3.57 1.70 7.39 0.29 6.40 8.63 13 E2_Aa NovelBoundary 0 72.68 32.63 6.03 24.41 67.57 65.25 66.24 35.69 15.48 18.08 18.32 23.41 39.28 32.90 20.03 12.90 36.00 12.23 3.48 5.75 17.92 28.78 12.38 14 ER2a ExonRegion 0 35.06 25.96 15.58 38.75 43.29 39.18 26.24 60.86 111.81 91.74 50.58 73.12 50.55 36.45 20.57 33.55 75.22 40.98 9.91 50.02 63.22 45.88 32.89 15 E2a_E3a KnownJunction 0 54.60 70.97 22.23 59.67 32.17 56.73 35.07 118.54 155.81 159.08 57.33 73.97 78.57 85.64 33.87 98.69 105.56 106.66 17.79 107.38 63.51 153.21 67.10 16 ER3a ExonRegion 0 32.12 75.56 28.49 68.38 101.39 113.82 49.27 113.62 181.14 139.82 76.13 72.34 94.16 102.78 54.05 94.91 83.42 129.56 33.80 90.54 71.93 130.25 79.83 17 E3_Da KnownBoundary 0 12.00 45.98 12.15 23.81 66.47 58.77 25.61 50.15 65.86 43.36 34.80 24.46 8.12 42.97 4.45 43.24 25.15 39.92 7.62 39.69 22.30 62.09 26.80 18 E3a_E3b KnownJunction 0 17.41 94.72 33.12 63.43 124.62 265.47 67.88 77.51 175.66 105.25 37.96 0.00 16.07 23.07 0.00 79.81 58.34 80.54 23.06 90.00 56.16 90.38 49.34 19 E3_Ab KnownBoundary 0 12.15 52.29 12.27 27.10 60.02 109.26 53.97 28.05 59.23 46.87 18.69 17.11 12.50 14.30 0.00 27.00 41.61 25.08 17.79 26.21 24.71 34.66 26.29 20 ER3b ExonRegion 1 30.69 118.96 31.86 68.14 177.94 254.90 103.27 106.30 197.00 138.20 73.45 116.90 77.39 121.00 36.27 72.82 95.73 106.25 27.08 88.30 73.82 118.76 69.01 21 ER3c ExonRegion 0 49.92 135.63 38.84 59.85 181.83 335.27 174.99 101.72 191.34 160.74 69.92 92.90 94.82 101.72 47.37 62.61 125.51 91.26 22.23 63.83 79.14 94.08 75.40 22 E3_Db NovelBoundary 0 34.67 84.52 21.35 27.84 75.98 258.43 147.90 50.97 83.65 98.26 29.59 19.06 62.33 53.98 18.91 20.34 69.94 32.33 8.09 26.59 39.78 49.42 45.75 23 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E3c_E5a KnownJunction 0 83.50 148.33 46.78 51.94 174.96 403.52 236.36 124.33 173.90 179.20 66.81 124.39 67.53 87.70 66.38 73.40 116.22 80.50 16.38 67.50 99.59 80.95 59.92 25 ER3d ExonRegion 0 62.03 133.59 44.40 53.26 165.48 371.84 211.83 119.66 169.59 189.42 67.65 96.25 76.12 98.95 49.99 58.07 121.37 83.15 16.42 61.21 86.11 88.31 65.06 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.71 0.00 0.53 0.00 0.00 0.00 0.00 1.44 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 0 53.10 130.46 51.81 71.85 155.48 242.46 143.71 139.74 171.01 177.80 70.80 120.66 65.25 109.17 46.36 53.11 98.31 93.51 37.19 74.24 135.77 147.07 50.56 29 E5_Da KnownBoundary 0 22.52 78.28 21.61 33.06 65.45 79.16 53.66 73.40 65.10 79.05 33.43 23.56 12.66 22.19 0.00 16.41 34.88 38.88 22.78 31.51 79.82 71.70 15.45 30 E5a_E5b KnownJunction 1 62.83 75.64 42.31 85.07 113.24 88.98 76.67 129.71 146.29 141.21 47.12 7.50 6.98 13.71 6.18 25.04 101.54 97.83 9.22 65.39 100.39 163.25 40.21 31 E5_Ab KnownBoundary 0 39.71 51.31 24.48 48.71 37.86 31.97 40.89 48.67 83.19 75.62 23.80 11.55 20.45 26.02 4.82 18.37 25.25 34.20 3.95 45.00 36.39 66.44 25.69 32 ER5b ExonRegion 0 70.90 125.07 54.53 87.91 137.80 138.45 102.61 133.96 188.97 194.97 71.52 64.94 86.77 118.56 49.32 47.55 94.08 103.47 41.41 89.36 150.95 184.39 57.26 33 ER5c ExonRegion 0 93.73 118.46 52.00 86.13 123.24 143.61 97.20 135.52 220.37 211.34 67.39 94.09 146.86 149.76 72.36 85.53 126.07 140.21 39.22 111.18 119.56 169.45 96.21 34 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E5b_E7a KnownJunction 0 124.99 103.07 59.34 94.73 122.24 152.70 67.39 176.17 235.96 248.58 77.28 121.99 106.97 164.46 111.63 131.16 148.67 192.63 50.54 74.97 99.21 221.42 84.34 36 E5b_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I5 Intron 0 7.78 15.69 5.95 8.57 8.55 4.97 10.22 34.48 11.98 13.09 2.45 11.22 10.59 4.49 5.84 4.84 7.36 0.89 1.92 6.54 1.20 1.76 1.59 38 I5_SR2 SilentIntronRegion 0 7.95 15.96 6.02 8.76 8.76 5.10 10.37 35.25 12.20 13.33 2.51 11.43 10.86 4.60 5.94 4.96 7.53 0.91 1.97 6.66 1.23 1.80 1.63 39 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER6a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 2.65 1.73 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 I6 Intron 0 9.13 7.45 5.61 5.71 12.07 3.84 12.03 23.24 17.33 9.50 4.04 7.21 15.64 5.74 6.14 3.69 5.18 3.19 1.67 6.82 1.44 2.04 2.30 42 I6_SR2 SilentIntronRegion 0 19.61 8.04 7.11 6.09 13.52 5.43 18.55 29.64 18.34 9.18 4.03 5.06 15.01 6.87 6.81 3.45 5.47 3.45 0.00 8.00 0.67 2.06 3.39 43 I6_AR3 ActiveIntronRegion 0 3.49 7.46 6.48 1.77 9.36 5.45 8.57 17.39 17.56 7.05 5.17 9.03 19.01 6.56 4.11 3.60 5.25 2.01 1.46 5.65 1.42 2.58 1.70 44 E7_Aa NovelBoundary 1 3.26 5.79 4.67 1.80 15.62 0.00 9.98 20.04 24.36 7.47 2.68 41.71 12.99 4.83 4.45 11.79 17.20 18.82 9.04 6.01 2.97 3.12 3.33 45 ER7a ExonRegion 0 101.39 183.62 72.15 124.34 160.77 279.10 146.44 192.54 243.46 225.90 85.03 116.37 136.86 156.62 81.42 97.07 125.66 149.99 54.73 114.69 116.29 157.34 116.41 46 E7a_E8a KnownJunction 0 74.75 187.99 54.08 132.48 203.99 251.39 134.30 176.99 225.75 207.48 82.65 186.96 199.01 169.46 102.48 180.64 94.53 141.65 74.45 145.60 75.92 165.09 110.46 47 E8_Aa NovelBoundary 0 21.71 24.40 0.00 8.42 51.44 2.21 27.56 33.72 21.33 3.12 2.00 18.76 33.60 5.36 8.90 7.69 8.88 0.00 3.76 5.50 0.00 0.00 4.18 48 ER8a ExonRegion 0 83.23 171.40 73.58 176.85 177.24 251.91 124.16 208.54 244.82 250.35 72.36 128.57 154.47 153.27 144.75 192.35 97.16 148.94 90.02 128.49 69.90 206.36 140.26 49 E8a_E9a KnownJunction 0 101.72 132.21 88.23 189.05 212.90 226.18 142.60 221.76 238.77 243.10 85.71 114.49 153.56 140.39 126.71 156.03 91.82 123.41 80.00 118.76 70.12 239.12 141.96 50 ER9a ExonRegion 0 93.18 146.66 71.98 154.52 163.41 266.27 165.07 192.10 235.44 240.03 97.55 108.64 148.59 134.55 83.42 83.85 124.11 107.34 56.17 110.44 82.00 130.70 115.74 51 E9a_E10a KnownJunction 0 127.95 192.93 66.97 138.74 167.83 314.14 229.51 158.38 188.89 213.82 84.71 155.75 127.10 133.73 127.33 58.45 132.87 88.42 53.74 130.33 73.08 145.80 93.47 52 ER10a ExonRegion 0 143.89 221.71 80.07 157.64 206.10 310.70 189.37 192.93 244.52 241.24 83.93 120.31 125.18 139.37 108.03 130.05 113.55 131.19 55.50 124.60 83.67 147.61 123.79 53 E10a_E11a KnownJunction 0 123.87 138.59 72.41 130.85 210.70 312.21 175.86 175.76 206.16 197.92 50.96 90.03 137.00 151.69 76.52 53.23 121.65 76.52 26.35 99.14 67.52 84.01 77.94 54 ER11a ExonRegion 0 92.91 148.87 67.41 126.28 175.63 286.18 156.50 170.73 196.12 204.93 65.00 106.67 122.47 143.86 86.41 87.06 103.38 82.18 39.32 105.21 81.44 122.26 90.28 55 E11a_E12a KnownJunction 0 146.25 110.11 81.25 136.85 135.57 267.23 141.23 175.96 198.58 223.33 77.02 153.05 125.48 96.71 109.15 81.60 105.66 85.64 45.84 109.43 46.95 93.38 85.36 56 ER12a ExonRegion 0 136.33 146.83 83.75 118.73 173.22 280.13 171.68 197.27 193.87 222.30 77.17 126.35 115.90 138.60 94.89 76.34 104.71 76.12 35.31 112.30 58.57 117.53 92.34 57 E12_Da KnownBoundary 0 27.19 18.75 17.65 16.48 19.27 39.75 51.45 26.45 31.60 33.47 35.85 75.02 67.53 39.38 10.75 16.32 9.07 10.53 3.76 11.89 5.93 24.00 7.77 58 E12a_E13a KnownJunction 0 121.73 120.70 45.09 95.73 211.88 300.45 98.66 112.54 150.64 129.39 31.32 30.01 34.74 51.39 61.07 29.82 22.07 50.61 24.85 56.25 62.89 71.70 42.60 59 ER12b ExonRegion 0 15.63 21.04 7.96 14.76 18.86 23.59 36.64 24.47 21.10 21.24 17.38 28.76 27.28 15.89 16.31 11.26 13.40 3.45 3.43 8.61 7.16 19.41 11.59 60 E12_Db NovelBoundary 0 40.23 30.13 6.80 28.70 50.08 56.90 44.47 27.81 47.34 28.58 12.27 43.51 19.97 17.07 15.20 20.25 0.00 0.00 4.14 14.70 2.84 23.39 7.94 61 I12 Intron 0 35.20 13.50 15.40 26.88 37.72 21.48 22.44 27.76 19.69 22.02 6.19 13.82 11.14 8.90 9.73 7.77 6.96 3.34 3.36 7.48 6.71 15.87 6.42 62 I12_AR1 ActiveIntronRegion 0 35.23 13.51 15.41 26.90 37.75 21.50 22.46 27.78 19.71 22.04 6.19 13.83 11.15 8.91 9.74 7.78 6.97 3.34 3.36 7.48 6.72 15.88 6.43 63 E13_Aa NovelBoundary 0 39.49 12.30 5.68 20.21 41.68 8.12 12.76 15.32 22.22 16.20 0.00 19.81 27.76 9.83 4.45 0.00 0.00 2.45 0.00 0.00 0.00 4.84 4.35 64 ER13a ExonRegion 0 87.54 112.31 75.69 115.42 166.27 214.20 96.63 188.80 166.41 199.72 19.02 46.54 33.02 35.34 50.12 17.09 16.55 27.43 24.86 61.49 21.89 82.03 26.57 65 ER13b ExonRegion 0 0.00 2.03 0.61 0.68 4.01 3.67 1.32 0.86 0.00 1.15 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00