Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HIPK3 Gene 0 77.51 46.79 24.89 56.83 115.99 112.56 77.81 86.23 197.41 85.47 142.00 172.72 208.92 128.05 51.00 82.19 133.11 37.88 19.24 36.63 114.69 330.24 162.04 2 379016 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 303296 Transcript 0 7.66 3.90 0.00 1.01 15.86 29.39 16.61 10.20 34.06 13.40 24.28 32.69 46.23 28.64 6.91 21.05 40.35 8.22 0.00 10.02 12.68 98.51 34.90 4 456517 Transcript 0 0.60 1.90 0.52 0.43 0.57 0.90 1.78 1.28 1.81 0.12 0.82 4.55 4.89 1.69 0.46 2.11 2.08 0.00 0.23 0.30 14.41 6.48 8.28 5 IG42_AR3 ActiveIntergenicRegion 0 0.00 0.52 1.96 0.00 0.68 1.41 1.01 1.95 7.23 5.76 23.66 5.88 2.94 14.84 2.17 11.33 20.54 6.59 2.36 5.46 33.78 7.83 28.69 6 ER1a ExonRegion 1 2.93 3.57 1.90 2.11 2.56 9.94 5.52 5.19 26.35 14.60 32.53 8.70 7.72 56.22 8.80 19.77 37.29 24.42 4.46 8.99 68.21 35.70 52.58 7 E1a_E3a KnownJunction 1 0.00 26.97 0.00 9.59 3.99 27.14 6.71 15.24 64.24 31.99 84.50 26.26 13.31 107.54 14.09 60.92 52.83 65.16 9.22 24.67 90.01 122.28 170.38 8 E1a_E4a NovelJunction 0 0.00 0.00 0.00 1.37 3.31 6.64 0.00 0.00 4.98 0.00 2.21 0.00 0.00 0.00 0.00 3.93 4.21 2.16 0.00 2.36 6.12 12.37 3.50 9 ER2a ExonRegion 0 1.20 0.45 1.03 0.86 1.14 1.81 1.40 2.55 3.63 0.25 1.64 1.44 1.51 3.37 0.92 4.21 4.16 0.00 0.45 0.60 13.19 10.57 8.53 10 E2a_E3a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 7.65 8.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.63 2.39 8.02 11 I2_SR2 SilentIntronRegion 0 18.10 4.97 11.80 8.47 12.17 3.57 7.20 9.54 7.51 4.62 0.90 6.28 8.95 0.68 4.01 4.34 3.77 1.09 1.16 2.00 1.90 4.60 6.68 12 I2_AR2 ActiveIntronRegion 0 26.46 7.63 9.96 9.54 47.83 5.50 25.16 12.10 13.28 6.88 0.00 4.33 14.07 0.00 0.00 8.92 3.30 0.00 9.56 2.13 0.00 21.10 11.75 13 I2_AR3 ActiveIntronRegion 0 21.87 8.13 11.23 10.22 34.34 6.11 21.29 12.10 14.51 9.27 0.00 4.33 14.07 0.00 0.00 8.92 6.88 0.00 7.70 2.13 0.00 22.57 8.32 14 I2_AR4 ActiveIntronRegion 0 24.63 8.13 15.26 11.40 26.03 6.33 11.31 19.17 16.84 12.82 0.00 5.90 11.09 0.00 3.17 13.24 9.90 0.17 6.37 0.19 0.00 17.80 5.87 15 I2_AR5 ActiveIntronRegion 0 20.53 8.13 15.56 13.49 15.79 9.90 6.62 20.05 16.55 16.06 1.74 4.33 4.69 0.00 8.12 11.89 10.56 1.85 3.19 0.43 0.22 15.00 1.47 16 I2_AR6 ActiveIntronRegion 1 22.58 0.97 14.24 16.06 13.61 5.16 5.55 18.59 12.85 17.55 3.84 5.65 5.51 0.00 11.10 7.37 6.12 3.03 3.32 8.42 1.56 11.53 9.79 17 I2_AR7 ActiveIntronRegion 0 44.67 9.96 18.14 16.12 31.28 4.83 16.21 25.31 25.56 11.77 0.94 7.36 23.51 0.95 5.06 3.89 1.71 0.00 6.50 5.68 0.24 18.25 8.02 18 I2_SR3 SilentIntronRegion 1 37.17 7.47 18.74 15.56 22.20 6.44 14.39 30.77 26.74 14.09 3.57 10.53 19.42 0.45 11.03 13.18 14.96 1.40 4.78 5.77 6.34 16.31 26.02 19 I2_AR8 ActiveIntronRegion 0 28.82 7.68 12.49 7.68 22.24 7.62 8.26 25.30 16.71 9.07 1.10 4.09 13.50 1.26 5.51 2.81 4.99 0.70 5.42 3.22 3.74 15.35 13.31 20 I2_AR10 ActiveIntronRegion 0 16.26 7.81 11.50 11.80 14.88 4.21 15.80 12.35 12.55 11.88 0.52 5.22 12.18 0.18 7.47 3.21 1.90 1.51 1.29 3.77 2.08 7.80 6.13 21 ER3a ExonRegion 1 24.95 28.83 10.57 19.81 34.12 53.03 46.79 40.26 132.58 46.52 152.81 167.66 211.87 141.50 21.89 83.62 166.13 43.25 15.12 49.12 145.60 229.78 175.68 22 E3a_E4a KnownJunction 1 22.67 8.62 0.00 15.38 57.22 41.34 54.01 46.58 120.95 46.98 160.99 154.25 213.62 153.57 5.81 86.64 179.62 33.33 4.80 32.41 118.86 194.05 158.01 23 ER4a ExonRegion 1 17.82 20.07 6.62 15.55 46.65 64.74 43.04 28.23 117.20 39.28 167.06 122.34 186.16 166.43 13.99 95.01 199.20 30.16 10.10 36.29 131.55 211.06 184.49 24 E4a_E5a KnownJunction 1 20.30 8.95 5.23 8.46 65.70 58.72 45.58 21.77 142.82 45.75 148.35 159.80 349.49 166.23 23.73 88.87 230.29 27.44 4.24 43.53 138.57 210.95 149.04 25 ER5a ExonRegion 1 17.60 16.88 4.68 22.11 48.85 83.91 48.19 28.36 132.34 59.86 190.28 173.14 251.27 143.14 19.41 89.96 184.30 28.27 15.93 41.05 104.60 270.22 160.76 26 E5a_E6a KnownJunction 1 13.93 16.25 12.51 26.54 48.90 103.80 94.46 28.09 158.48 67.48 194.68 312.70 242.35 123.14 13.72 100.83 218.98 30.72 39.62 44.81 93.96 286.51 189.93 27 E6_Aa NovelBoundary 0 5.70 0.00 12.51 3.83 14.35 0.00 41.60 5.59 6.39 5.13 7.48 0.00 0.00 2.18 4.45 0.00 3.65 3.40 0.00 5.24 8.15 2.69 10.41 28 ER6a ExonRegion 0 22.50 14.52 3.82 22.14 53.73 92.30 67.84 38.68 174.61 69.93 230.77 199.30 239.46 124.07 23.81 106.45 244.61 30.46 20.14 56.08 114.36 380.23 227.07 29 E6a_E7a KnownJunction 0 27.63 36.64 1.74 30.80 32.43 71.95 65.27 56.39 221.06 75.59 272.75 130.39 297.87 127.02 38.32 90.49 273.59 22.72 20.42 65.45 139.12 450.68 208.54 30 ER7a ExonRegion 0 22.73 34.89 9.32 27.66 54.41 76.92 68.65 60.41 221.17 77.22 203.75 289.11 289.72 111.36 25.17 90.90 217.56 34.92 20.20 57.65 89.85 405.63 175.61 31 E7a_E8a KnownJunction 0 39.41 43.22 8.75 36.49 103.65 114.99 122.07 67.20 244.93 78.01 139.09 250.73 371.08 105.13 17.80 90.23 186.82 36.60 8.09 78.55 46.21 392.63 200.77 32 ER8a ExonRegion 1 27.75 26.42 13.57 30.74 55.77 76.15 66.45 57.10 218.85 74.08 172.81 312.07 308.66 142.64 25.80 132.43 173.44 48.92 22.87 56.36 106.92 371.10 238.51 33 E8a_E9a KnownJunction 0 31.41 55.25 7.04 34.63 50.76 38.16 39.70 64.69 169.01 78.41 203.89 316.90 244.46 167.52 29.92 102.20 161.01 56.92 18.07 43.53 152.90 328.46 233.89 34 ER9a ExonRegion 1 43.88 36.59 10.26 23.60 52.63 96.82 46.09 56.27 179.27 73.36 201.96 238.37 259.01 164.47 23.56 126.39 208.62 72.61 28.05 43.96 219.32 315.03 237.49 35 E9a_E10a KnownJunction 0 45.42 31.51 0.00 14.75 40.15 97.44 69.78 60.75 163.28 59.04 180.78 296.65 201.29 188.00 63.91 125.86 183.36 78.02 11.77 34.52 241.43 294.66 317.64 36 ER10a ExonRegion 1 25.97 23.70 5.87 20.00 43.36 85.36 48.86 44.44 147.00 63.63 151.89 162.57 165.92 176.98 30.80 121.18 165.59 70.20 19.79 35.84 234.51 269.68 234.35 37 E10a_E11a KnownJunction 1 10.37 27.82 3.05 12.02 44.06 83.42 25.22 39.31 170.92 42.20 125.82 183.21 165.41 132.97 17.80 95.62 136.98 68.27 42.07 34.00 188.61 216.15 202.23 38 ER11a ExonRegion 1 12.16 23.77 9.06 17.53 30.20 80.58 30.93 30.06 151.85 60.02 134.22 138.02 128.32 148.73 14.60 85.69 155.01 62.62 20.41 40.07 218.40 245.21 226.90 39 E11a_E12a KnownJunction 1 21.19 44.60 9.73 20.31 23.01 63.88 33.56 40.70 174.56 60.39 124.87 130.39 94.47 196.48 4.45 56.65 127.91 46.88 26.35 53.69 274.04 312.35 197.44 40 ER12a ExonRegion 1 23.03 29.88 7.22 15.72 32.74 72.32 36.98 39.51 163.31 61.15 159.74 90.57 139.20 157.51 18.84 95.88 170.87 49.76 19.01 35.21 218.82 263.51 209.70 41 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 20.37 22.54 11.08 12.53 37.99 14.88 21.27 43.51 33.60 26.72 5.19 21.87 18.42 3.98 0.00 8.25 5.56 76.36 44.73 42 E12a_E14a KnownJunction 1 56.75 24.21 5.94 26.24 15.62 60.76 40.89 31.59 169.91 57.32 141.19 106.68 101.94 123.73 13.35 58.02 146.14 48.54 20.24 20.52 163.83 229.75 217.16 43 ER13a ExonRegion 0 12.09 5.39 0.00 0.95 15.25 40.02 24.71 9.77 35.66 12.03 24.15 26.05 51.37 34.00 6.63 20.52 51.87 7.42 0.00 12.02 17.35 106.26 33.52 44 E13_Da NovelBoundary 0 10.52 21.25 6.36 9.16 23.77 13.34 40.63 12.82 33.56 6.72 22.69 38.71 53.24 10.42 4.45 3.85 16.36 3.61 0.00 5.31 2.47 61.36 11.44 45 E13a_E14a KnownJunction 0 10.89 6.31 0.00 2.06 11.97 25.61 14.04 8.30 28.53 13.30 27.43 28.51 53.73 25.19 8.90 20.76 50.77 13.27 0.00 9.78 15.14 112.91 26.46 46 I13 Intron 0 11.42 13.80 2.54 5.30 10.71 18.83 18.44 8.07 22.11 8.33 8.41 20.21 47.68 13.60 4.78 10.35 6.32 2.25 1.11 4.81 1.15 56.22 6.65 47 I13_SR1 SilentIntronRegion 0 11.58 14.00 2.58 5.37 10.86 19.09 18.67 8.18 22.41 8.45 8.53 20.40 48.34 13.77 4.85 10.49 6.41 2.28 1.12 4.88 1.17 56.93 6.74 48 E14_Aa NovelBoundary 1 25.04 14.87 6.95 13.48 45.67 62.24 34.14 37.34 51.24 18.00 11.63 31.21 94.64 23.31 13.97 24.87 18.23 4.68 4.71 17.39 6.30 104.22 4.27 49 ER14a ExonRegion 1 23.72 28.94 7.90 25.92 58.98 94.28 63.42 57.94 240.98 90.98 210.45 225.04 234.47 180.08 28.10 135.97 174.25 61.69 28.88 53.08 203.33 383.54 256.92 50 E14a_E15a KnownJunction 1 24.75 34.47 4.38 21.41 73.26 94.66 71.90 59.84 261.86 91.95 237.06 291.39 296.57 205.66 35.73 148.34 224.22 45.93 25.98 49.60 280.96 313.58 253.61 51 ER15a ExonRegion 1 34.54 35.75 14.79 35.42 59.06 96.22 82.56 71.06 260.03 88.88 267.77 218.87 194.35 213.11 36.83 167.89 238.58 95.85 30.09 50.91 273.65 424.42 292.75 52 E15a_E16a KnownJunction 1 41.27 33.15 24.25 24.91 55.86 111.36 75.87 79.31 250.55 91.38 224.53 254.03 236.35 211.08 4.45 116.12 230.29 60.60 26.92 79.00 269.84 359.87 305.17 53 ER16a ExonRegion 0 41.18 39.87 20.94 45.04 61.02 125.55 66.13 94.75 292.21 102.28 250.98 223.48 276.02 256.14 52.65 171.54 232.28 100.47 34.28 55.14 320.93 477.23 320.34 54 E16a_E17a KnownJunction 0 91.05 44.93 22.03 77.51 117.57 118.62 100.78 122.24 346.84 103.50 299.39 221.17 212.16 295.78 57.98 266.25 273.30 126.76 55.81 71.65 410.76 546.08 370.90 55 ER17a ExonRegion 0 50.75 40.34 20.50 54.45 68.71 129.43 80.88 102.86 331.48 116.40 289.44 241.91 469.44 286.30 62.22 226.11 280.50 120.12 46.56 66.01 394.60 500.52 428.98 56 E17a_E18a KnownJunction 0 55.42 41.51 25.55 60.73 63.41 147.13 75.52 123.88 362.24 150.64 318.66 326.81 565.22 369.36 80.85 196.87 248.15 166.02 62.59 54.33 409.77 554.22 467.11 57 ER18a ExonRegion 0 54.18 39.81 21.67 57.54 115.26 145.42 90.95 96.77 298.15 101.98 245.68 250.75 419.46 217.84 55.51 143.23 236.26 80.64 40.85 48.77 211.49 463.98 293.82 58 E18_Da KnownBoundary 0 57.49 21.31 9.52 60.63 81.75 93.30 118.40 82.02 214.99 72.66 127.93 142.25 165.57 112.07 70.34 86.05 113.14 11.57 8.47 26.59 22.05 277.02 81.69 59 ER18b ExonRegion 0 157.68 78.72 46.86 103.87 218.86 163.75 116.04 139.89 221.95 118.88 90.22 164.31 161.02 82.24 86.30 45.61 65.61 9.95 13.49 26.94 25.62 376.85 84.57 60 IG43_SR3 SilentIntergenicRegion 0 0.68 6.29 3.52 13.52 5.12 2.82 7.16 16.62 8.85 11.06 0.07 0.08 0.35 0.00 0.24 0.00 0.02 5.39 4.32 7.49 0.23 0.38 1.46 61 IG43_SR5 SilentIntergenicRegion 0 0.28 5.15 1.87 8.62 3.89 1.53 7.21 16.14 9.36 9.21 0.00 0.00 0.29 0.00 0.16 0.00 0.00 4.17 3.09 5.89 0.06 0.09 0.88 62 IG43_AR10 ActiveIntergenicRegion 0 0.47 11.75 6.75 8.40 7.98 34.50 10.20 52.19 56.11 101.13 3.94 0.78 2.55 1.55 4.35 0.00 0.00 119.33 44.00 61.55 20.12 21.03 10.19 63 IG43_SR8 SilentIntergenicRegion 0 0.00 20.34 8.17 18.85 12.04 37.90 13.24 87.00 79.05 134.57 4.83 0.00 0.00 1.08 9.67 0.00 0.00 140.43 61.05 75.89 22.77 26.39 22.51 64 IG43_AR11 ActiveIntergenicRegion 0 0.92 8.19 5.41 7.53 6.87 19.89 9.41 41.79 39.40 90.53 2.69 0.77 6.23 1.05 1.35 0.00 0.00 91.93 49.84 48.42 19.63 31.47 21.22