Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC068580.3 Gene 0 2.80 0.61 2.36 4.09 0.23 0.84 1.20 5.82 8.63 2.92 0.08 0.05 0.21 0.06 0.36 0.06 0.11 4.39 2.21 2.52 8.97 7.11 7.11 2 340134 Transcript 0 1.06 0.00 0.00 0.00 0.00 0.00 0.44 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.24 3 382123 Transcript 0 1.78 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 0.00 2.76 5.51 4 486852 Transcript 0 0.12 0.00 0.01 0.08 0.54 0.00 0.00 0.76 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.78 0.12 1.84 5 482459 Transcript 0 0.57 0.00 1.09 0.12 0.08 0.09 0.32 3.26 3.56 2.31 0.00 0.00 0.11 0.00 0.00 0.00 0.00 1.10 1.03 0.61 0.21 2.20 1.78 6 ER1a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.88 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.49 7 ER1b ExonRegion 0 4.77 0.47 3.77 0.00 0.62 0.42 3.92 3.97 2.12 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.74 1.96 1.02 3.92 8.78 8 E1_Da NovelBoundary 0 0.00 0.00 8.81 0.00 0.00 11.53 0.00 7.72 1.79 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 6.20 0.00 2.82 36.45 9 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 10 E1a_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 11 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 2.81 0.00 7.53 7.09 12 ER2a ExonRegion 0 0.24 0.00 0.02 0.15 1.08 0.00 0.00 1.51 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.56 0.23 3.67 13 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 2.46 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 3.76 14 E2_Ac KnownBoundary 0 3.78 0.00 0.00 1.80 0.00 0.00 0.00 4.64 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.17 0.00 0.00 2.35 6.25 3.93 15 ER2b ExonRegion 0 2.12 0.00 0.20 1.36 2.45 0.00 0.00 5.55 0.77 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 2.13 0.00 4.77 1.47 16 ER2c ExonRegion 0 1.15 0.00 0.00 0.72 0.00 0.07 1.63 4.69 2.16 0.76 0.00 0.00 0.00 0.00 1.26 0.00 0.00 8.62 0.88 1.44 0.88 5.92 8.03 17 E2_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.01 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.81 2.45 0.00 18 E2a_E2d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 20 E2b_E2d KnownJunction 0 3.56 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.67 0.00 0.00 0.00 5.51 7.85 21 ER2d ExonRegion 0 2.12 0.00 0.00 0.68 0.00 1.83 0.00 2.16 2.47 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.39 3.19 0.00 2.20 6.25 11.75 22 ER2e ExonRegion 0 1.14 0.00 0.73 0.23 0.15 0.18 0.63 1.84 3.63 1.39 0.00 0.00 0.22 0.00 0.00 0.00 0.00 2.20 2.05 1.21 0.41 1.71 3.55 23 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER2f ExonRegion 0 2.71 0.00 0.13 0.53 0.00 1.06 1.28 1.97 1.90 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 2.04 0.00 0.00 3.43 6.48 25 E2_Dc KnownBoundary 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 5.59 13.92 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 8.85 2.56 8.34 19.53 11.61 26 ER2g ExonRegion 0 2.85 1.23 3.41 4.22 0.00 2.82 3.39 7.57 7.68 4.28 0.00 0.00 1.14 0.00 0.00 0.00 0.00 2.86 7.35 3.03 16.09 13.56 18.98 27 E2_Dd KnownBoundary 0 10.22 0.00 7.21 15.18 0.00 7.72 3.44 7.56 16.49 7.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.53 8.38 2.56 37.31 47.09 57.11 28 E2d_E3a KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 4.68 3.50 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 29 ER2h ExonRegion 0 14.13 2.71 7.76 16.90 0.00 1.34 4.28 15.31 21.07 12.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.87 4.78 3.95 46.45 36.92 34.00 30 E2e_E3a KnownJunction 0 22.67 3.35 6.00 14.68 0.00 5.00 5.92 38.98 24.97 20.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.15 9.22 5.24 83.09 30.37 37.13 31 I2_SR2 SilentIntronRegion 0 6.23 0.77 2.12 2.85 1.34 1.31 2.64 5.33 3.29 2.99 0.00 0.83 0.15 0.10 0.15 0.00 0.62 4.53 3.96 4.68 1.35 5.54 11.36 32 ER3a ExonRegion 0 12.96 2.15 12.87 21.40 0.63 3.47 5.45 30.57 33.03 14.73 0.91 0.00 0.91 0.29 0.64 0.10 0.78 11.74 11.45 8.40 66.27 44.16 40.91 33 E3_Da KnownBoundary 0 10.15 0.00 6.12 16.88 0.00 2.90 8.08 44.20 29.05 12.46 0.00 0.00 0.00 0.00 4.45 3.25 0.00 11.94 8.94 5.69 77.22 41.46 30.65 34 ER3b ExonRegion 0 2.15 0.67 2.02 4.38 0.19 0.78 0.63 5.34 9.50 2.52 0.07 0.08 0.16 0.08 0.53 0.10 0.12 4.62 1.39 2.71 7.42 5.37 4.07