Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM34 Gene 0 7.42 1.20 2.77 3.47 4.67 0.94 2.11 4.15 3.98 3.05 4.58 4.12 4.49 7.32 5.32 7.66 9.14 4.91 0.48 1.09 2.84 1.22 2.06 2 380089 Transcript 0 8.51 4.79 12.54 16.93 3.42 2.16 5.59 17.18 18.61 15.10 0.76 8.73 11.85 7.20 12.99 10.78 4.86 25.41 2.50 5.43 2.16 2.66 4.61 3 354852 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 1.18 0.00 0.00 0.85 0.00 2.07 0.86 0.00 0.00 0.00 0.48 0.00 0.00 4 396866 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 491385 Transcript 0 15.50 0.95 1.71 0.95 8.76 0.00 6.11 1.09 1.59 0.75 16.14 31.34 35.24 18.24 4.74 10.99 4.06 0.00 0.00 1.00 2.47 1.95 2.75 6 495668 Transcript 0 0.00 0.00 0.61 0.00 3.12 0.00 0.00 0.00 0.00 0.00 5.73 5.75 0.00 0.81 5.41 3.15 0.33 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 17.03 9.58 25.07 33.87 6.84 4.32 11.17 34.37 37.21 30.20 1.52 17.47 23.70 14.40 25.99 21.56 9.72 50.83 5.00 10.86 4.32 5.31 9.22 8 E1_Da NovelBoundary 0 7.11 0.00 0.00 0.00 4.16 0.00 0.00 0.00 0.00 0.00 0.00 13.95 0.00 4.83 9.89 17.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 1.18 0.00 0.00 0.85 0.00 2.07 0.86 0.00 0.00 0.00 0.48 0.00 0.00 11 ER2b ExonRegion 0 71.15 4.36 1.38 1.61 69.76 8.60 10.98 7.29 3.19 1.61 54.37 11.10 7.33 103.94 48.11 97.43 129.64 0.00 0.00 0.00 43.79 14.93 24.29 12 E2a_E3a KnownJunction 0 216.85 6.38 4.32 3.83 169.19 26.12 28.13 20.37 8.54 2.66 103.34 5.40 0.00 192.48 67.50 209.35 263.86 0.00 0.00 0.00 64.68 37.54 50.19 13 Ix_AR1 ActiveIntronRegion 0 5.14 0.00 0.00 0.00 2.97 0.00 0.54 1.04 0.71 0.00 24.74 6.39 0.00 13.17 4.14 24.06 1.07 0.00 0.00 0.00 0.00 0.00 0.00 14 E3_Ab NovelBoundary 0 26.97 0.00 3.49 1.86 3.48 0.00 2.08 18.89 5.96 1.50 20.74 12.60 0.00 10.71 9.52 11.62 22.53 0.00 0.00 0.00 0.00 2.51 6.83 15 ER3a ExonRegion 0 100.89 2.64 3.68 2.83 79.48 9.64 12.01 15.56 6.18 1.78 58.06 3.05 0.87 89.03 28.91 113.49 142.31 0.00 0.00 0.00 26.44 19.60 20.12 16 ER3b ExonRegion 0 8.02 0.48 0.99 0.65 9.18 1.72 2.47 3.29 1.29 0.30 10.51 1.76 0.95 10.36 7.35 10.18 26.27 0.00 0.00 0.00 7.26 0.90 2.48 17 E3_Da KnownBoundary 0 73.57 2.76 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 7.21 0.00 22.89 3.00 0.00 15.81 8.23 0.00 0.00 0.00 0.00 0.00 0.00 18 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3c ExonRegion 0 33.65 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3d ExonRegion 0 9.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER4a ExonRegion 0 14.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 Ix Intron 0 10.05 0.17 0.15 0.50 5.26 0.30 0.76 1.05 2.71 0.56 6.49 16.68 22.25 10.68 2.70 12.41 4.05 0.00 0.00 0.00 2.52 1.88 2.16 25 Ix_SR1 SilentIntronRegion 0 10.08 0.17 0.15 0.50 5.27 0.30 0.76 1.06 2.72 0.56 6.51 16.73 22.32 10.72 2.71 12.45 4.07 0.00 0.00 0.00 2.53 1.88 2.17 26 ER5a ExonRegion 0 0.06 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 3.32 2.83 3.79 5.22 0.50 3.69 0.00 0.00 0.00 0.00 0.92 0.00 0.00 27 E5a_E6a KnownJunction 0 9.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 12.15 0.00 9.59 4.45 4.36 4.77 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5b ExonRegion 0 2.58 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 2.27 12.42 0.82 4.24 2.02 6.33 3.44 0.00 0.00 0.00 1.44 0.00 0.00 29 E6_Aa NovelBoundary 0 10.45 0.00 0.00 0.00 15.45 0.00 0.00 4.35 7.18 1.64 2.68 32.26 32.30 4.59 0.00 12.30 4.77 0.00 0.00 0.00 0.00 2.94 0.00 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER6a ExonRegion 0 8.47 0.00 0.00 0.00 0.00 0.00 3.11 0.53 0.64 0.25 7.06 22.40 20.60 14.48 8.33 12.92 6.60 0.00 0.00 0.00 2.97 0.00 0.00 32 ER6b ExonRegion 0 15.50 0.95 1.71 0.95 8.76 0.00 6.11 1.09 1.59 0.75 16.14 31.34 35.24 18.24 4.74 10.99 4.06 0.00 0.00 1.00 2.47 1.95 2.75 33 E6_Db NovelBoundary 0 27.63 0.00 0.00 5.93 11.97 0.00 5.39 8.79 8.07 4.35 20.32 54.77 82.30 25.96 5.56 76.99 34.03 0.00 0.00 0.00 3.15 2.82 8.28 34 Ix Intron 0 14.52 0.59 0.74 2.48 11.67 1.17 2.46 4.64 4.39 1.09 19.56 24.44 36.63 20.77 9.64 23.68 15.74 0.00 0.00 0.37 4.23 2.30 2.90 35 Ix_AR1 ActiveIntronRegion 0 15.18 0.00 0.66 2.70 11.21 0.39 2.34 5.25 4.53 2.31 19.59 26.51 43.79 23.85 5.73 20.26 20.85 0.00 0.00 0.77 1.26 2.62 3.05 36 Ix_SR1 SilentIntronRegion 0 14.26 0.88 0.79 2.56 12.66 1.95 2.47 4.94 5.45 0.65 21.09 23.40 36.79 20.23 13.56 27.72 14.65 0.00 0.00 0.23 4.97 1.59 2.62 37 Ix_AR2 ActiveIntronRegion 0 14.22 0.86 0.77 1.70 9.02 0.00 2.79 2.17 0.00 0.00 13.85 24.04 19.88 16.01 3.60 16.29 8.35 0.00 0.00 0.00 8.36 4.39 3.71 38 ER7a ExonRegion 0 0.00 0.00 0.30 0.00 0.08 0.00 0.00 0.00 0.00 0.00 2.76 0.56 0.00 0.32 0.63 0.18 0.72 0.00 0.00 0.00 0.00 0.00 0.00 39 E7a_E8a KnownJunction 0 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 0.00 4.71 0.00 0.00 8.79 0.00 0.00 0.00 0.00 0.00 0.00 40 Ix Intron 0 10.14 0.00 3.02 4.01 4.41 1.81 1.96 2.55 3.64 2.83 12.73 33.32 14.05 19.54 10.56 14.70 12.01 0.61 0.00 0.00 2.54 2.40 1.94 41 Ix_AR1 ActiveIntronRegion 0 1.66 0.00 0.00 1.01 0.00 0.00 0.92 0.00 0.59 0.00 6.05 2.45 4.69 9.74 4.79 7.62 5.17 1.04 0.00 0.00 3.74 0.00 2.30 42 Ix_AR2 ActiveIntronRegion 0 13.59 0.00 2.81 5.22 5.25 2.89 2.06 2.02 3.52 4.03 13.97 40.57 16.62 23.92 12.09 15.54 14.20 0.41 0.00 0.00 3.58 3.28 2.68 43 Ix_AR3 ActiveIntronRegion 0 7.35 0.00 3.96 3.06 4.28 0.78 2.03 3.85 4.48 1.82 12.55 30.16 12.70 15.89 9.84 15.23 10.54 0.79 0.00 0.00 0.94 1.77 0.88 44 E8_Aa NovelBoundary 0 6.74 0.00 0.00 7.13 0.00 2.90 0.00 0.00 4.60 0.00 9.95 36.76 21.91 18.89 13.85 24.87 20.38 0.00 0.00 0.00 0.00 2.82 3.67 45 E8a_E9a KnownJunction 0 3.33 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 5.70 0.00 2.12 0.00 12.30 4.77 0.00 0.00 0.00 0.00 0.00 0.00 46 ER8a ExonRegion 0 0.00 0.00 1.23 0.00 2.68 0.00 0.00 0.00 0.00 0.00 1.15 5.77 0.00 3.25 0.97 2.97 3.30 0.00 0.00 0.00 0.00 0.00 0.00 47 E8_Db NovelBoundary 0 31.26 0.00 5.00 1.96 24.62 0.00 2.25 0.00 4.63 2.55 27.06 37.36 7.47 28.96 17.80 35.72 25.81 0.00 0.00 0.00 3.15 0.00 0.00 48 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 6.63 6.30 0.00 0.00 6.18 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER8b ExonRegion 0 0.00 0.00 1.23 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.83 5.20 0.00 1.62 4.64 2.97 0.66 0.00 0.00 0.00 0.00 0.00 0.00 50 Ix Intron 0 33.28 0.00 0.00 1.23 5.93 2.22 1.60 4.15 2.97 1.03 18.70 23.82 18.41 12.38 8.39 13.18 12.64 0.37 0.00 0.00 0.89 1.68 0.00 51 Ix_AR1 ActiveIntronRegion 0 36.73 0.00 0.00 1.41 6.39 2.54 1.79 4.76 3.40 1.15 21.29 26.90 19.88 13.62 9.61 14.44 14.47 0.43 0.00 0.00 1.02 1.92 0.00 52 ER9a ExonRegion 0 0.00 0.00 0.17 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.35 0.15 0.00 0.20 0.43 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E9_Da KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.01 7.59 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 54 ER9b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER9c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00