Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C11orf35 Gene 0 4.49 0.11 0.95 0.81 1.35 1.43 0.37 3.81 1.41 1.54 6.15 1.46 2.15 10.85 13.00 7.03 7.75 1.71 2.05 0.70 1.23 1.63 1.17 2 329451 Transcript 0 7.73 0.04 1.07 0.18 0.90 1.30 0.14 3.33 1.25 1.19 8.07 0.63 4.34 15.14 12.37 10.14 7.16 1.45 0.53 0.38 3.71 2.57 1.17 3 441853 Transcript 0 5.52 0.00 0.80 0.00 3.60 0.00 0.00 4.85 0.00 1.31 5.01 2.70 2.77 4.57 6.28 4.01 1.44 0.00 0.00 0.00 0.00 0.30 1.63 4 492515 Transcript 0 0.71 0.00 0.57 0.10 0.34 0.43 0.01 0.63 0.16 0.29 0.54 0.25 0.05 1.05 0.60 0.66 0.14 0.16 0.00 0.00 0.02 0.14 0.03 5 486629 Transcript 0 0.04 0.00 0.42 0.58 0.00 0.02 0.00 0.13 0.01 0.01 0.06 0.00 0.00 1.25 0.02 0.02 0.02 0.00 0.00 0.00 0.01 0.01 0.00 6 469990 Transcript 0 0.69 0.00 0.21 0.00 0.80 0.99 0.00 0.71 0.35 0.48 0.38 0.00 1.01 2.37 2.35 0.50 0.78 0.52 1.69 0.71 0.03 0.32 0.24 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.08 0.00 8 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 5.18 0.00 0.00 0.00 2.73 2.34 0.00 0.99 0.29 0.81 1.77 1.01 3.29 3.94 11.17 2.02 3.30 0.00 0.00 0.00 1.08 2.08 1.00 10 E1_Da NovelBoundary 0 3.26 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.55 0.00 9.48 4.82 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 13.78 0.00 0.00 0.00 8.40 0.00 0.00 4.64 0.00 1.61 2.53 5.40 6.49 2.12 15.58 4.27 0.00 0.00 0.00 0.00 0.00 0.00 4.01 12 E1a_E4b KnownJunction 0 11.26 0.00 0.00 0.00 0.00 8.06 0.00 0.00 1.22 0.00 2.21 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 13 E2_Aa NovelBoundary 0 3.11 0.00 1.39 1.53 0.00 0.00 0.00 0.00 3.36 3.14 0.00 6.30 0.00 9.54 9.52 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 0 1.85 0.00 0.00 0.00 1.56 2.14 0.00 0.00 0.54 1.00 1.69 1.26 0.00 1.56 1.79 1.73 0.00 0.80 0.00 0.00 0.00 0.00 0.00 15 E2_Da NovelBoundary 0 29.19 2.57 9.49 0.00 3.23 6.81 0.00 2.38 4.69 4.75 7.21 18.61 0.00 18.78 4.45 4.27 0.00 7.01 4.80 2.49 0.00 0.00 0.00 16 E2a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 Ix Intron 0 6.33 0.00 0.68 0.00 2.50 1.03 0.74 1.44 0.34 1.92 7.22 5.23 2.16 12.17 9.28 5.55 0.62 1.54 1.79 2.38 0.82 1.56 0.00 18 Ix_AR1 ActiveIntronRegion 0 6.35 0.00 0.68 0.00 2.49 1.03 0.74 1.45 0.35 1.92 7.25 5.24 2.17 12.22 9.31 5.57 0.62 1.55 1.79 2.39 0.83 1.56 0.00 19 ER3a ExonRegion 0 2.77 0.00 1.09 0.00 2.40 0.00 0.00 3.47 0.00 2.30 2.92 2.70 1.80 2.46 3.27 4.27 4.32 0.00 0.00 0.00 0.00 0.91 0.88 20 E3_Ab KnownBoundary 0 7.19 0.00 10.64 0.00 7.39 13.00 0.00 15.03 3.59 11.63 2.68 0.00 0.00 4.71 4.45 3.59 7.11 4.97 4.05 9.78 0.00 5.57 0.00 21 ER3b ExonRegion 0 0.00 0.00 1.23 0.19 0.00 0.00 0.00 4.59 0.00 1.15 4.97 0.00 0.00 5.57 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3_Da NovelBoundary 0 10.45 0.00 17.39 0.00 4.33 26.97 6.71 12.57 0.00 1.67 4.69 18.46 6.66 7.30 20.03 4.36 4.77 0.00 16.94 11.19 0.00 6.18 4.35 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E3a_E4b KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 0.00 6.45 0.00 0.00 9.58 0.00 0.00 9.12 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4_Aa NovelBoundary 0 6.82 0.00 14.34 2.03 12.82 19.59 0.00 11.42 4.92 1.02 14.48 12.60 0.00 9.48 4.45 8.03 7.85 3.65 9.22 3.26 0.00 0.00 0.00 26 ER4a ExonRegion 0 0.08 0.00 0.85 1.15 0.00 0.04 0.00 0.27 0.01 0.01 0.12 0.00 0.00 2.49 0.03 0.04 0.04 0.00 0.00 0.00 0.03 0.02 0.00 27 E4_Ab KnownBoundary 0 6.08 0.00 16.17 2.06 3.48 5.39 0.00 10.80 1.48 1.42 6.58 0.00 0.00 9.36 0.00 0.00 3.65 6.26 0.00 0.00 0.00 2.76 0.00 28 ER4b ExonRegion 0 3.96 0.00 0.70 1.71 0.74 0.98 0.31 3.54 0.64 0.68 5.17 0.00 1.75 5.47 4.67 2.59 3.86 0.00 0.00 0.00 0.57 1.19 1.79 29 E4_Da NovelBoundary 0 10.82 0.00 4.49 3.63 0.00 10.28 0.00 11.99 1.27 4.70 5.00 0.00 0.00 9.36 0.00 0.00 4.30 2.40 14.12 0.00 0.00 0.00 0.00 30 E4a_E5a KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E4a_E5b KnownJunction 0 6.00 0.00 1.42 5.23 3.82 0.00 2.21 6.12 0.00 2.12 19.90 0.00 0.00 13.77 5.19 20.51 12.81 1.78 0.00 0.00 0.00 3.12 4.35 32 E5_Ab NovelBoundary 0 0.00 0.00 10.14 1.83 0.00 0.00 0.00 6.41 1.59 3.09 2.68 0.00 0.00 2.12 0.00 0.00 0.00 4.56 14.21 3.26 0.00 0.00 0.00 33 ER5a ExonRegion 0 0.11 0.00 1.29 0.22 0.14 0.00 0.07 2.09 0.00 0.12 0.71 0.00 0.25 2.39 0.46 0.47 0.69 0.00 0.00 0.00 0.12 0.22 0.15 34 ER5b ExonRegion 0 1.63 0.00 1.74 1.61 0.28 0.00 1.05 6.93 1.11 3.09 5.61 0.00 3.30 6.68 4.33 5.65 4.97 0.11 0.00 0.00 0.84 1.78 1.58 35 E5_Da KnownBoundary 0 13.19 3.09 5.68 2.06 0.00 0.00 0.00 6.86 3.59 6.90 4.79 0.00 0.00 11.83 0.00 9.57 3.93 1.53 8.09 0.00 0.00 3.12 0.00 36 E5a_E6a KnownJunction 0 2.82 0.00 1.77 3.50 0.00 0.00 0.00 2.55 1.36 2.39 7.58 0.00 6.33 2.47 6.30 7.26 16.55 1.66 0.00 0.00 2.72 3.12 0.00 37 ER5c ExonRegion 0 1.56 0.00 0.00 0.31 0.00 0.00 0.00 1.05 0.28 0.35 0.32 0.00 0.00 1.32 0.76 1.10 0.00 0.00 0.00 0.00 0.00 0.47 0.00 38 E5_Db NovelBoundary 0 45.79 0.00 7.01 0.00 0.00 14.48 1.72 9.49 4.80 3.33 7.42 0.00 0.00 20.90 9.64 11.54 4.77 9.33 12.71 0.00 0.00 10.78 3.59 39 E6_Aa NovelBoundary 0 11.04 3.35 6.24 0.00 4.07 8.06 1.68 8.71 8.25 3.04 9.53 0.00 0.00 14.66 9.77 7.86 4.39 6.84 4.61 3.07 0.00 5.14 0.00 40 ER6a ExonRegion 0 8.51 0.00 0.40 0.50 1.43 2.77 0.03 9.96 1.87 1.95 1.74 2.07 5.17 13.29 15.07 15.81 6.00 1.41 0.94 0.00 2.28 1.73 1.54 41 E6a_E7a KnownJunction 0 20.74 0.00 0.00 1.70 4.24 4.66 0.00 19.96 4.28 3.33 2.68 0.00 0.00 35.14 13.35 20.34 12.81 2.40 4.80 0.00 6.30 6.18 0.00 42 ER7a ExonRegion 0 6.76 0.00 0.26 1.15 0.07 0.94 0.87 5.35 2.01 1.22 3.10 0.00 0.27 9.33 13.84 9.32 5.95 1.80 1.55 0.05 2.71 2.06 0.00 43 E7_Da NovelBoundary 0 6.82 0.00 4.49 3.13 3.23 0.00 0.00 14.62 3.10 2.90 5.37 0.00 0.00 7.89 4.45 8.20 4.11 7.05 7.81 0.00 6.30 8.88 0.00 44 E7a_E8a KnownJunction 0 21.34 0.00 1.39 0.00 0.00 0.00 0.00 13.23 2.69 0.00 7.11 0.00 0.00 11.60 18.42 15.30 7.39 0.00 0.00 0.00 2.90 0.00 0.00 45 E8_Aa NovelBoundary 0 24.23 3.22 6.83 0.00 4.16 22.43 2.25 11.62 5.47 8.22 7.32 6.30 0.00 12.13 4.45 7.95 3.83 2.16 0.00 0.00 2.78 5.02 0.00 46 ER8a ExonRegion 0 28.43 0.00 4.74 0.00 1.98 5.26 3.03 7.74 2.95 1.63 14.96 2.64 8.22 32.98 29.05 17.79 12.87 1.10 3.00 3.02 3.58 7.04 3.58 47 E8a_E9a KnownJunction 0 20.45 0.00 0.00 0.00 0.00 0.00 2.03 2.30 1.79 1.32 19.37 0.00 0.00 25.84 17.80 23.84 12.72 2.57 4.24 0.00 0.00 3.12 4.18 48 E9_Aa NovelBoundary 0 6.96 0.00 11.38 0.00 0.00 5.00 0.00 14.25 1.74 4.24 2.05 0.00 0.00 9.54 0.00 3.42 0.00 2.57 16.19 25.25 2.53 0.00 0.00 49 ER9a ExonRegion 0 13.91 1.17 2.01 1.01 4.60 7.17 1.44 3.44 2.68 6.35 16.42 6.03 2.58 24.45 33.58 20.87 24.63 3.07 11.88 1.20 2.53 4.75 1.55 50 E9_Da NovelBoundary 0 13.56 0.00 2.99 0.00 0.00 0.00 10.47 2.38 2.89 3.30 2.05 0.00 6.01 7.95 5.19 3.50 8.51 2.03 0.00 2.94 0.00 5.69 0.00 51 E9a_E10a KnownJunction 1 17.41 0.00 0.00 1.33 0.00 0.00 0.00 1.64 1.10 0.00 14.74 0.00 6.17 15.13 60.57 3.85 25.43 1.87 3.95 0.00 0.00 4.90 4.35 52 E10_Aa NovelBoundary 0 3.33 2.63 7.66 0.00 0.00 5.22 2.25 6.04 5.82 0.00 2.16 0.00 6.49 5.06 9.64 4.10 7.48 8.29 13.08 0.00 0.00 3.12 0.00 53 ER10a ExonRegion 0 10.59 0.47 2.36 3.69 1.59 4.90 1.82 12.67 5.21 4.63 13.73 4.51 5.54 28.49 30.50 10.52 23.09 5.20 6.67 2.35 2.72 3.44 1.25 54 E10_Da KnownBoundary 0 14.82 2.70 4.82 0.00 0.00 0.00 2.16 11.71 6.08 3.28 22.53 0.00 5.84 29.14 45.86 11.28 25.90 2.57 3.67 2.94 2.41 0.00 0.00 55 ER10b ExonRegion 0 6.74 0.25 2.53 0.00 1.76 0.10 1.00 7.52 1.49 2.08 12.74 4.33 2.83 22.45 17.15 12.90 12.80 4.04 2.07 1.54 4.48 2.20 1.65 56 E10_Db NovelBoundary 0 10.59 3.22 0.00 5.16 0.00 7.89 1.85 14.95 3.36 3.14 2.58 0.00 0.00 12.36 18.42 8.37 7.95 9.12 9.04 12.02 0.00 0.00 0.00 57 E10b_E11a KnownJunction 0 7.41 0.00 2.81 0.00 3.40 0.00 0.00 4.52 1.71 2.71 5.00 0.00 6.82 16.01 4.45 24.35 13.46 2.53 0.00 0.00 11.49 0.00 0.00 58 I10 Intron 0 9.21 0.00 2.65 1.26 2.77 4.18 0.27 6.94 2.67 1.42 4.81 0.74 4.00 10.74 9.16 6.16 10.26 4.96 2.64 2.65 1.37 2.16 1.22 59 I10_SR1 SilentIntronRegion 0 10.07 0.00 2.91 1.39 2.91 4.48 0.30 7.33 2.79 1.51 5.13 0.44 4.40 11.53 9.95 6.77 10.99 5.36 2.90 2.91 1.51 2.30 1.23 60 E11_Aa NovelBoundary 0 27.26 5.53 3.37 1.56 22.75 14.14 4.02 10.10 1.39 2.18 7.37 0.00 0.00 28.43 16.44 17.17 8.70 8.29 4.42 8.76 8.59 3.12 0.00 61 ER11a ExonRegion 0 11.61 0.00 0.57 0.00 1.16 0.00 0.00 2.96 1.35 0.74 13.53 0.09 7.11 20.95 24.68 17.59 11.47 1.75 1.67 1.12 4.13 3.74 2.39 62 E11a_E12b KnownJunction 0 17.11 0.00 1.57 1.27 0.00 0.00 0.00 5.87 1.74 1.37 15.85 0.00 13.64 32.08 22.25 16.15 8.23 1.82 0.00 0.00 2.72 9.12 4.18 63 ER12a ExonRegion 0 0.18 0.00 0.03 0.00 1.80 0.60 0.00 1.05 0.03 0.90 0.25 0.00 0.41 2.05 2.71 0.39 0.14 0.00 3.12 2.13 0.10 0.95 0.06 64 E12_Ab KnownBoundary 0 0.00 3.09 0.00 0.00 4.33 2.21 0.00 6.98 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 3.48 2.36 0.00 2.94 0.00 65 ER12b ExonRegion 0 2.90 0.00 0.35 0.57 4.77 2.09 0.00 4.77 0.82 2.08 12.75 0.99 4.41 15.47 23.15 15.41 11.96 3.84 1.88 2.73 2.22 4.66 2.81 66 E12a_E13a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.13 1.16 14.53 0.00 0.00 17.07 17.80 15.72 13.74 0.00 0.00 3.26 0.00 5.39 0.00 67 ER13a ExonRegion 0 4.25 0.00 0.00 1.73 1.14 0.47 0.00 3.69 0.78 0.84 6.94 1.84 0.00 14.21 23.16 9.14 10.18 4.51 3.98 1.35 0.00 2.40 1.25 68 E13a_E14a KnownJunction 0 7.33 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 10.11 0.00 5.68 9.18 4.45 17.09 18.14 3.86 0.00 0.00 0.00 3.12 0.00 69 E14_Aa NovelBoundary 0 3.26 0.00 0.00 2.06 0.00 0.00 0.00 6.70 1.65 0.00 6.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.20 3.00 0.00 0.00 4.35 70 ER14a ExonRegion 0 4.81 0.00 0.47 1.05 1.39 0.33 0.00 3.49 3.26 1.27 10.06 1.85 1.00 13.10 15.60 6.11 11.14 2.82 2.89 0.00 0.57 0.62 1.52 71 E14_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.56 0.00 1.67 0.00 0.00 0.00 7.42 0.00 0.00 0.00 3.61 4.80 0.00 0.00 0.00 0.00 72 E14a_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 1.24 1.45 7.16 0.00 0.00 14.48 13.60 0.00 4.11 0.00 0.00 0.00 0.00 2.82 0.00 73 ER14b ExonRegion 0 0.47 0.00 0.06 0.00 0.59 0.94 0.00 1.09 1.01 0.55 0.88 0.00 2.62 5.07 4.35 1.11 2.20 1.57 1.96 0.00 0.00 0.01 0.65 74 E14_Ab KnownBoundary 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 2.47 0.00 7.69 0.00 4.48 3.86 0.00 0.00 0.00 0.00 75 ER14c ExonRegion 0 1.09 0.52 1.81 1.57 0.69 1.89 0.00 1.80 2.69 1.62 7.19 2.41 0.99 13.01 20.07 8.27 10.05 1.77 2.27 0.55 0.73 0.68 1.51 76 E14b_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.01 0.00 0.00 2.68 11.70 0.00 16.89 22.25 7.52 4.77 1.62 0.00 0.00 2.84 0.00 0.00 77 ER15a ExonRegion 0 1.69 0.00 1.48 0.00 1.10 0.70 0.00 1.99 0.00 0.35 3.38 1.54 0.79 7.14 10.89 2.74 7.75 0.63 1.97 0.88 1.23 0.43 1.21 78 ER15b ExonRegion 0 1.41 0.00 0.54 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00