Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IRF7 Gene 0 119.16 4.85 28.14 19.52 35.24 24.13 9.16 94.94 27.14 42.49 325.32 106.00 118.47 619.80 965.00 610.90 310.25 15.25 12.01 13.96 20.02 18.99 18.91 2 397574 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 397562 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 397570 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 330243 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 397566 Transcript 0 8.44 0.00 4.51 0.40 4.74 6.01 5.50 8.12 0.78 5.36 17.20 4.60 0.95 32.01 68.49 28.82 9.82 3.88 4.48 3.80 4.88 0.16 0.00 7 469048 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 348655 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 13.90 0.75 0.65 0.86 1.52 7.09 1.28 0.98 0.00 1.15 11.21 0.00 0.00 9.85 41.10 33.39 13.53 0.00 2.97 3.26 7.20 1.94 6.66 10 ER1b ExonRegion 1 77.09 4.96 5.80 2.56 9.29 25.25 8.52 6.28 2.02 6.04 67.07 0.53 0.91 137.74 276.43 218.74 80.44 2.72 5.25 8.73 12.91 8.41 18.14 11 E1_Da NovelBoundary 0 23.49 3.09 2.78 7.23 0.00 0.00 0.00 2.14 3.59 1.07 0.00 0.00 0.00 2.47 17.80 7.43 0.00 21.89 3.76 0.00 3.15 0.00 3.76 12 E1a_E2c KnownJunction 1 257.60 15.26 8.40 7.33 51.78 47.47 18.06 39.92 13.98 17.59 190.26 5.70 13.31 492.67 1063.60 951.29 246.66 12.73 7.72 3.26 7.72 13.35 41.49 13 E2_Aa NovelBoundary 0 6.37 2.70 10.64 14.62 0.00 2.44 10.20 13.10 5.93 6.58 2.47 6.15 0.00 6.83 38.57 15.98 12.06 21.56 4.61 2.56 2.35 0.00 0.00 14 ER2a ExonRegion 0 8.44 0.00 4.51 0.40 4.74 6.01 5.50 8.12 0.78 5.36 17.20 4.60 0.95 32.01 68.49 28.82 9.82 3.88 4.48 3.80 4.88 0.16 0.00 15 E2_Ab KnownBoundary 0 14.08 0.00 9.61 2.06 19.61 2.90 4.24 7.64 1.79 4.00 15.00 0.00 0.00 11.77 35.35 20.34 4.58 8.95 0.00 2.81 0.00 0.00 0.00 16 E2_Ac KnownBoundary 0 19.71 0.00 6.36 1.40 11.38 5.22 0.00 0.00 5.93 5.26 31.53 0.00 13.31 9.42 26.82 75.02 50.30 8.37 9.60 0.00 0.00 2.39 0.00 17 ER2b ExonRegion 1 80.43 3.39 11.85 3.18 30.33 20.78 9.27 15.56 6.59 11.85 103.73 1.44 10.94 212.76 461.30 375.48 130.94 9.85 11.68 2.84 8.81 5.56 10.77 18 ER2c ExonRegion 0 57.99 3.29 26.64 17.70 21.97 18.50 8.16 63.03 26.17 34.35 259.30 78.45 74.70 438.27 779.50 539.97 277.32 23.05 13.95 15.12 23.81 15.03 25.79 19 E2_Da KnownBoundary 0 17.41 2.96 16.17 9.22 48.73 17.21 13.87 46.91 13.28 15.18 93.81 24.31 20.45 81.11 253.42 101.43 73.21 22.30 13.55 9.33 13.59 8.45 15.62 20 E2a_E2d KnownJunction 0 64.83 5.72 20.19 14.95 82.51 63.43 13.51 73.44 35.59 28.02 264.49 103.23 46.91 492.67 773.72 410.83 340.44 8.29 3.67 9.78 5.99 15.12 8.45 21 ER2d ExonRegion 0 8.66 2.34 9.73 4.23 16.55 6.01 4.46 23.11 4.14 11.20 56.19 17.77 15.32 86.12 191.31 66.11 50.63 9.99 8.41 10.12 12.97 7.44 5.80 22 E2_Ad KnownBoundary 0 19.34 0.00 10.14 9.36 11.54 0.00 4.24 26.74 3.85 6.31 32.48 0.00 0.00 70.81 122.75 42.47 34.50 4.19 0.00 5.69 5.87 5.27 6.74 23 ER2e ExonRegion 0 97.82 5.36 26.87 17.57 37.66 24.29 11.53 71.85 22.86 33.47 321.04 99.34 112.18 636.44 981.50 450.31 325.00 11.68 5.66 12.60 17.48 22.65 11.69 24 E2b_E3a KnownJunction 0 147.80 0.00 47.81 19.41 48.05 29.13 2.25 108.44 21.73 30.86 344.72 118.84 150.31 723.59 1168.93 731.60 393.27 8.12 3.76 9.20 14.33 19.78 4.35 25 ER3a ExonRegion 0 100.99 5.64 36.11 27.44 24.51 22.09 5.40 100.99 27.82 38.43 319.86 133.84 162.28 718.15 1006.12 740.41 371.64 12.52 13.41 15.32 23.83 23.87 14.40 26 E3_Da NovelBoundary 0 3.78 0.00 27.35 10.89 0.00 0.00 1.85 15.07 5.96 8.97 4.90 17.26 0.00 20.07 35.85 3.67 26.27 21.14 16.19 10.80 5.00 3.12 7.26 27 E3a_E4a KnownJunction 0 124.76 3.35 36.01 29.90 26.66 26.41 12.54 161.95 42.85 42.55 337.40 109.84 186.68 686.27 969.28 930.53 401.68 10.49 8.56 9.40 34.97 24.00 11.27 28 I3 Intron 0 12.36 1.58 13.51 13.44 8.33 4.64 5.93 10.53 4.66 13.97 5.64 10.51 1.40 13.35 38.14 10.41 9.00 13.23 11.78 7.87 4.28 1.62 6.86 29 I3_SR1 SilentIntronRegion 0 12.45 1.60 13.61 13.54 8.40 4.68 5.97 10.61 4.69 14.08 5.69 10.59 1.41 13.45 38.43 10.49 9.06 13.33 11.87 7.93 4.31 1.63 6.91 30 E4_Aa NovelBoundary 0 41.93 0.00 27.23 37.26 0.00 2.33 6.18 15.03 12.21 15.50 9.21 0.00 5.84 9.71 21.76 7.01 3.93 31.84 4.52 16.87 5.93 2.63 12.12 31 ER4a ExonRegion 0 92.12 5.89 31.11 22.20 34.60 24.93 12.99 116.48 34.52 48.48 384.58 136.12 161.93 715.27 1055.02 843.58 414.68 6.92 8.53 6.85 25.70 28.82 14.93 32 E4_Da NovelBoundary 0 34.45 5.99 7.13 8.76 3.40 8.35 6.14 30.64 11.86 14.16 37.96 0.00 28.08 60.98 165.15 63.74 47.31 17.45 31.06 6.46 10.87 2.76 3.50 33 E4a_E5a KnownJunction 0 83.72 0.00 32.08 18.91 51.70 21.64 0.00 89.95 18.89 45.48 370.04 110.29 159.41 771.33 935.29 779.97 382.70 2.36 0.00 12.27 14.27 24.98 4.27 34 E4a_E6a KnownJunction 0 6.45 9.41 4.46 1.56 7.89 4.54 4.37 34.87 6.31 14.24 12.63 12.15 12.50 27.14 80.72 33.15 45.63 2.36 0.00 0.00 4.70 2.33 0.00 35 E5_Aa NovelBoundary 0 30.52 0.00 16.08 37.49 32.85 16.01 22.88 33.97 14.87 34.17 65.07 6.30 60.39 105.42 242.29 179.01 54.32 16.37 25.98 10.35 16.43 3.12 14.77 36 ER5a ExonRegion 0 157.36 5.62 26.87 24.28 37.37 24.44 12.96 109.99 26.69 52.27 470.03 189.02 215.76 843.46 1094.38 841.97 399.92 11.71 9.37 16.44 27.29 23.89 22.66 37 E5_Da NovelBoundary 0 76.38 3.35 13.48 10.29 27.84 16.30 3.84 8.30 5.41 16.73 29.59 18.91 33.28 145.80 198.16 104.50 60.78 8.50 8.09 11.70 3.15 2.82 7.51 38 E5a_E6a KnownJunction 0 76.38 2.83 11.32 12.99 18.85 16.41 3.67 106.79 18.11 36.13 340.77 122.44 148.20 568.72 672.85 437.83 307.90 0.00 4.05 2.88 15.38 22.84 13.83 39 E5a_E7a KnownJunction 0 6.37 0.00 0.00 2.06 7.64 0.00 2.12 19.30 3.27 7.90 50.75 0.00 0.00 76.40 110.02 103.99 48.71 0.00 0.00 3.20 5.81 0.00 4.27 40 I5 Intron 0 50.57 0.00 8.39 4.67 11.06 4.21 2.43 4.73 10.99 4.71 21.31 9.95 14.20 78.70 112.52 81.93 25.78 2.11 5.85 3.91 6.08 1.91 4.05 41 I5_AR1 ActiveIntronRegion 0 51.48 0.00 8.54 4.75 11.27 4.27 2.48 4.82 11.20 4.80 21.71 10.13 14.46 80.13 114.53 83.36 26.26 2.15 5.96 3.98 6.17 1.95 4.12 42 E6_Aa NovelBoundary 0 122.24 2.70 23.83 9.59 23.01 5.68 10.38 28.88 9.52 25.79 38.33 32.41 19.48 155.40 226.10 163.46 100.05 18.41 24.09 15.21 5.13 2.69 12.80 43 ER6a ExonRegion 0 123.71 5.24 17.28 7.93 24.02 24.62 6.70 85.65 19.52 42.08 287.76 141.08 191.75 757.19 1050.05 716.97 327.28 7.05 17.10 12.59 26.12 21.51 27.10 44 E6_Da NovelBoundary 0 43.64 0.00 16.44 11.35 7.56 2.90 2.25 21.19 15.08 24.98 16.58 15.15 13.31 84.17 176.90 73.91 39.36 30.18 9.60 7.99 8.77 0.00 7.17 45 E6a_E7a KnownJunction 0 214.70 2.83 26.34 12.95 22.67 24.87 3.40 105.31 31.37 47.09 254.38 151.25 245.76 657.08 1035.05 991.71 306.69 13.80 12.05 8.18 19.15 18.00 25.10 46 I6 Intron 0 30.48 0.00 0.00 1.22 3.21 4.40 3.18 4.64 0.00 2.05 19.72 6.42 2.32 50.79 94.92 46.44 23.77 0.00 11.47 3.83 1.32 1.25 3.52 47 I6_AR1 ActiveIntronRegion 0 31.19 0.00 0.00 1.25 3.29 4.51 3.25 4.73 0.00 2.10 20.17 6.57 2.37 51.93 97.14 47.41 24.30 0.00 11.71 3.92 1.35 1.28 3.61 48 E7_Aa NovelBoundary 0 70.38 6.58 12.51 8.82 16.13 8.23 4.28 20.09 12.76 19.39 45.12 16.81 18.83 82.41 234.75 168.08 40.86 10.45 14.40 8.95 6.05 0.00 3.93 49 ER7a ExonRegion 0 176.45 2.76 35.85 18.54 20.75 30.88 7.04 118.24 35.76 48.23 438.84 131.22 203.93 910.73 1327.59 899.93 441.38 6.91 8.97 16.50 27.97 25.59 22.84 50 E7a_E8a KnownJunction 0 200.41 3.09 43.67 36.19 46.52 19.08 19.30 153.08 40.83 45.10 360.46 117.49 205.67 971.46 1213.68 790.56 467.98 8.04 0.00 14.76 16.00 29.82 25.01 51 ER8a ExonRegion 0 224.33 8.48 39.55 21.00 64.66 30.22 12.16 133.18 39.33 56.37 416.75 123.51 137.77 880.93 1319.71 792.46 394.19 20.36 9.31 19.53 20.74 18.81 20.10 52 E8_Da NovelBoundary 0 25.12 0.00 6.65 7.72 3.48 11.19 2.21 27.64 3.04 26.51 19.16 6.15 7.14 76.23 177.39 73.40 25.99 24.87 8.28 8.88 0.00 2.51 0.00 53 E8a_E9a KnownJunction 1 187.66 3.09 20.79 20.91 55.94 50.88 18.72 164.09 55.35 69.63 447.64 117.49 67.04 921.72 1692.94 901.47 329.69 7.13 0.00 17.96 13.65 26.39 26.55 54 E9_Aa NovelBoundary 0 32.15 3.16 15.32 19.34 15.53 42.99 12.01 31.26 11.86 17.25 50.59 12.60 18.83 134.26 269.98 90.66 42.92 22.55 8.09 11.12 2.72 2.45 21.34 55 ER9a ExonRegion 0 112.96 1.37 35.66 23.38 64.38 42.45 8.67 165.26 47.82 70.31 519.30 97.14 84.70 813.70 1603.44 769.18 402.90 22.02 17.83 15.05 16.44 22.85 31.02 56 E9_Da NovelBoundary 0 16.82 0.00 12.00 18.95 0.00 4.77 5.65 19.02 5.50 6.34 7.58 5.40 0.00 9.30 37.46 4.36 17.11 21.10 8.75 14.57 0.00 0.00 0.00 57 E9a_E10a KnownJunction 0 83.79 0.00 28.62 26.64 44.40 10.22 2.25 195.96 49.22 72.04 501.81 206.17 163.79 855.32 1391.44 937.36 410.85 6.84 11.20 19.94 19.71 13.41 32.18 58 E10_Aa NovelBoundary 0 3.33 0.00 27.50 14.42 8.23 5.00 8.26 16.10 3.50 13.65 12.00 6.30 0.00 2.35 37.09 11.62 22.35 27.19 3.76 3.07 5.44 0.00 4.18 59 ER10a ExonRegion 0 102.36 4.27 29.60 32.42 30.54 20.61 7.99 126.13 29.19 56.85 331.44 100.11 87.97 457.00 885.41 508.71 255.57 22.67 24.15 10.53 13.45 23.19 18.56 60 E10_Da KnownBoundary 0 382.59 6.25 28.18 31.26 106.54 118.45 27.43 84.00 18.03 49.94 233.74 139.40 166.55 460.01 613.88 589.33 198.50 19.94 40.38 11.12 11.43 8.88 23.22 61 ER10b ExonRegion 0 169.06 4.07 14.40 15.84 48.83 68.08 17.21 48.40 7.41 26.09 145.93 88.21 103.18 393.85 642.26 317.65 125.02 7.39 23.49 4.26 8.81 6.25 14.68 62 ER10c ExonRegion 0 149.74 4.07 9.80 11.36 41.59 55.09 12.91 27.80 4.99 15.24 99.79 62.24 86.96 294.37 447.88 241.36 101.50 6.01 15.00 0.98 4.87 5.38 7.95 63 ER10d ExonRegion 0 51.33 2.54 4.29 4.09 8.03 6.88 0.66 6.48 0.93 5.16 19.33 19.48 34.00 95.82 113.87 55.73 33.01 2.31 0.00 0.00 0.00 1.04 1.47 64 IG25 Intergenic 0 10.02 1.24 8.36 11.47 3.68 3.08 10.11 7.87 2.25 7.05 4.72 10.81 0.00 1.72 18.95 4.99 5.54 14.02 17.51 8.12 6.05 0.64 2.24 65 IG25_SR1 SilentIntergenicRegion 0 10.14 1.26 8.46 11.61 3.72 3.12 10.23 7.96 2.28 7.12 4.77 10.94 0.00 1.74 19.16 5.05 5.61 14.19 17.70 8.22 6.10 0.64 2.27