Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	TSSC4	Gene	0	23.01	20.08	90.33	55.87	12.85	33.03	23.89	57.52	20.40	132.84	66.42	6.57	6.40	75.89	98.60	50.19	45.67	69.96	48.79	47.40	51.48	33.29	35.07
2	333256	Transcript	0	0.00	0.00	5.08	0.00	0.00	0.71	0.00	0.00	0.91	0.09	0.55	0.00	0.00	1.36	0.95	2.97	0.00	0.53	0.26	1.65	6.84	0.04	2.76
3	380996	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	380992	Transcript	0	3.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.53	0.00	0.00	7.12	0.00	4.36	0.00	0.00	4.14	0.00	0.00	0.00	0.00
5	437110	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	451491	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	435795	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	485682	Transcript	0	3.23	1.79	12.06	8.40	2.25	3.99	6.32	14.98	5.42	31.07	8.41	1.25	2.57	18.36	13.26	5.56	4.41	17.54	18.61	5.11	6.98	5.89	7.06
9	440813	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	496468	Transcript	0	23.63	6.59	21.40	11.49	6.16	10.25	14.13	40.11	10.84	59.80	15.85	7.56	3.28	26.25	33.27	7.19	9.11	32.64	22.82	8.83	9.80	14.96	7.36
11	437640	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
12	467308	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	IG28	Intergenic	0	1.12	0.51	6.95	1.74	1.42	0.46	1.37	4.42	2.92	2.37	2.24	2.11	0.29	2.64	2.88	4.05	1.08	1.46	2.17	1.50	7.50	2.42	3.92
14	IG28_AR1	ActiveIntergenicRegion	0	2.31	0.74	7.32	2.22	0.97	0.67	1.93	4.68	1.34	3.11	2.82	0.00	1.41	1.46	1.80	2.17	0.00	1.99	3.48	2.33	21.66	6.83	11.77
15	ER1a	ExonRegion	0	0.00	0.00	5.08	0.00	0.00	0.71	0.00	0.00	0.91	0.09	0.55	0.00	0.00	1.36	0.95	2.97	0.00	0.53	0.26	1.65	6.84	0.04	2.76
16	E1_Ab	KnownBoundary	0	0.00	0.00	8.81	0.00	0.00	2.78	0.00	1.85	2.78	0.00	2.32	0.00	0.00	0.00	4.45	0.00	0.00	1.82	0.00	2.88	7.78	0.00	3.16
17	ER1b	ExonRegion	0	0.00	0.00	9.78	0.00	0.00	0.64	0.73	1.39	1.56	3.73	2.92	0.00	0.00	1.55	2.24	0.90	1.61	1.25	2.77	2.66	5.25	2.29	3.42
18	E1_Ac	KnownBoundary	0	0.00	0.00	14.01	0.00	0.00	0.00	0.00	8.50	1.68	5.16	0.00	0.00	0.00	2.12	0.00	4.36	3.55	2.03	4.71	0.00	8.71	0.00	0.00
19	ER1c	ExonRegion	0	1.80	1.67	6.46	0.26	0.79	2.03	0.42	1.22	0.14	2.19	5.12	0.00	0.00	4.33	5.17	2.41	2.50	0.61	2.19	4.54	11.07	2.85	5.62
20	E1_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.03	5.37	0.00	0.00	0.00	6.30	0.00	0.00	0.00	4.80	0.00	7.85	0.00	0.00
21	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1_Af	KnownBoundary	0	29.71	20.52	22.00	4.49	18.85	43.38	9.85	4.15	2.58	16.73	23.32	0.00	0.00	7.18	11.87	25.12	16.92	17.04	11.67	31.51	35.46	13.35	15.19
23	ER1d	ExonRegion	0	22.75	20.34	23.89	10.22	14.72	44.01	20.19	3.46	3.71	24.66	33.83	0.00	0.00	30.86	61.65	30.46	30.53	22.63	19.11	39.89	45.18	15.63	15.42
24	ER1e	ExonRegion	0	40.21	34.57	46.56	28.62	18.73	83.13	52.96	10.37	7.82	48.93	59.92	0.00	0.00	77.96	99.61	43.59	61.62	41.88	35.04	66.67	62.44	22.92	42.09
25	ER1f	ExonRegion	0	94.28	79.60	81.50	68.34	60.93	201.98	116.24	29.28	18.49	112.59	179.65	2.97	0.00	162.04	219.42	150.30	167.21	137.89	152.35	139.82	122.02	54.59	154.64
26	E1_Da	NovelBoundary	0	27.78	9.41	3.67	0.00	4.33	11.47	15.37	2.55	0.00	4.70	7.05	0.00	0.00	13.13	0.00	4.36	4.02	14.30	0.00	0.00	2.84	9.25	8.02
27	E1a_E3a	KnownJunction	0	3.78	0.00	0.00	0.00	4.33	2.90	2.08	2.38	1.74	5.37	2.58	0.00	0.00	7.00	15.58	0.00	4.77	7.09	12.89	5.82	5.75	3.12	0.00
28	E1a_E3b	KnownJunction	0	3.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.53	0.00	0.00	7.12	0.00	4.36	0.00	0.00	4.14	0.00	0.00	0.00	0.00
29	E1a_E3f	KnownJunction	0	178.99	133.53	154.70	132.75	103.40	321.75	198.78	67.16	34.17	201.92	268.59	5.55	0.00	147.63	190.12	245.06	251.33	220.86	271.35	197.95	142.21	87.93	247.64
30	E2_Aa	NovelBoundary	0	21.56	8.95	15.85	9.76	4.33	25.84	45.80	9.08	1.79	36.00	5.37	0.00	13.64	24.55	24.35	32.81	17.11	47.26	38.21	0.00	8.65	8.82	32.78
31	ER2a	ExonRegion	0	6.46	3.57	24.12	14.99	4.49	7.98	12.63	27.78	9.68	60.47	16.82	2.51	5.14	31.77	26.52	11.12	8.82	30.93	37.21	10.22	13.96	11.77	14.12
32	E2_Da	NovelBoundary	0	26.97	20.52	53.64	20.48	4.16	19.76	13.87	37.38	18.61	79.46	17.85	0.00	0.00	37.20	26.58	7.18	8.51	37.64	30.40	14.64	16.31	11.39	7.43
33	E2a_E3f	KnownJunction	0	0.00	0.00	0.00	1.80	0.00	0.00	0.00	2.18	1.16	1.67	0.00	0.00	0.00	4.94	0.00	0.00	0.00	4.15	0.00	0.00	0.00	0.00	0.00
34	I2	Intron	0	14.15	5.69	34.08	15.79	7.07	6.56	19.56	34.05	8.87	55.00	21.04	7.21	3.60	31.63	32.64	20.80	8.73	27.85	33.67	17.20	14.73	8.09	11.87
35	I2_AR1	ActiveIntronRegion	0	14.24	5.72	34.28	15.89	7.12	6.59	19.68	34.25	8.93	55.33	21.16	7.25	3.63	31.81	32.84	20.92	8.78	28.02	33.86	17.30	14.82	8.14	11.94
36	E3_Aa	NovelBoundary	1	20.37	12.50	61.15	44.95	16.64	4.32	35.60	54.05	12.62	102.56	52.59	11.40	13.64	35.85	23.36	61.78	12.25	30.22	102.21	23.52	33.24	32.58	23.47
37	ER3a	ExonRegion	0	10.35	3.92	16.00	8.28	2.27	4.70	7.91	10.85	5.45	28.98	8.54	0.44	2.11	12.53	12.70	5.73	6.00	16.35	14.08	4.47	7.55	4.79	7.64
38	E3_Ab	KnownBoundary	0	5.70	2.43	13.31	2.06	0.00	2.78	10.73	14.38	6.05	25.04	10.00	0.00	0.00	5.89	11.37	0.00	9.35	11.48	4.71	3.00	5.62	0.00	0.00
39	E3_Da	KnownBoundary	0	5.93	3.35	4.02	10.55	3.40	2.90	3.84	6.53	0.00	25.14	21.48	0.00	8.28	4.83	8.90	3.25	9.35	11.36	12.42	13.74	5.25	5.76	0.00
40	E3a_E3f	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER3b	ExonRegion	0	8.47	4.07	17.56	11.36	5.35	9.17	23.39	28.81	6.18	37.08	27.06	4.33	4.69	33.02	30.95	12.88	19.81	25.87	15.93	10.64	9.55	2.08	8.81
42	ER3c	ExonRegion	0	11.16	6.39	43.53	22.84	6.48	4.58	14.48	47.00	13.69	86.59	32.84	6.44	7.40	41.06	51.12	19.26	18.80	49.42	39.54	12.85	16.14	21.37	12.35
43	E3_Ac	KnownBoundary	0	14.22	9.08	55.20	14.72	3.65	15.79	23.05	63.58	16.26	89.18	46.91	14.25	15.26	54.21	39.56	25.38	28.99	39.88	48.66	17.71	9.33	13.41	16.65
44	ER3d	ExonRegion	0	11.29	3.33	38.02	19.16	2.01	10.75	10.89	36.15	9.19	70.76	28.35	8.06	8.86	43.17	37.23	13.70	24.39	33.00	12.56	9.87	9.00	6.54	11.58
45	E3_Ad	NovelBoundary	0	34.60	0.00	29.86	17.38	12.48	8.23	9.94	22.39	3.59	25.55	22.43	0.00	12.66	51.27	28.31	20.34	20.66	10.07	3.86	15.28	14.76	8.39	20.66
46	E3_Db	NovelBoundary	0	21.04	9.60	12.80	3.10	0.00	2.38	23.01	13.76	7.64	28.96	9.16	18.01	0.00	9.83	17.06	21.45	12.62	11.73	9.32	8.12	8.28	5.88	7.60
47	E3b_E3f	KnownJunction	0	3.33	0.00	23.24	23.54	4.24	2.90	12.32	3.90	1.22	38.33	13.79	0.00	6.82	21.37	15.58	3.59	12.06	16.50	13.46	9.14	6.30	0.00	7.60
48	ER3e	ExonRegion	0	11.35	0.18	24.73	19.70	2.68	7.34	9.27	20.74	3.14	54.22	17.04	0.00	9.38	29.82	23.74	2.97	19.51	26.20	8.11	13.35	12.62	3.22	7.74
49	ER3f	ExonRegion	0	23.63	6.59	21.40	11.49	6.16	10.25	14.13	40.11	10.84	59.80	15.85	7.56	3.28	26.25	33.27	7.19	9.11	32.64	22.82	8.83	9.80	14.96	7.36
50	E3_Ae	KnownBoundary	0	3.48	0.00	8.28	3.63	0.00	0.00	6.49	11.25	6.19	18.70	6.79	0.00	0.00	0.00	0.00	7.86	0.00	6.18	4.61	8.50	0.00	0.00	0.00
51	E3_Af	KnownBoundary	0	13.78	3.09	10.38	2.93	0.00	2.78	5.83	7.64	6.45	13.94	2.42	6.00	0.00	2.59	0.00	7.35	4.30	8.91	7.25	0.00	5.13	4.78	4.01
52	ER3g	ExonRegion	0	129.11	105.75	140.92	126.75	82.95	256.73	156.23	98.52	38.29	247.73	247.41	8.66	9.38	201.39	266.92	190.22	211.26	218.03	242.09	202.13	152.06	87.51	199.69
53	ER3h	ExonRegion	0	40.55	29.19	138.53	92.73	23.24	49.00	36.68	83.43	40.32	209.27	140.36	10.93	8.30	83.45	122.19	64.74	104.17	138.29	87.56	93.29	95.51	38.20	56.25
54	E3c_E4a	KnownJunction	0	51.34	30.92	246.00	174.20	25.47	11.07	36.66	86.09	44.10	320.95	190.63	0.00	0.00	187.36	243.53	162.09	107.25	160.30	169.32	132.76	119.04	107.77	72.81
55	ER4a	ExonRegion	1	26.86	21.50	197.31	138.40	22.87	15.94	32.47	89.72	41.67	264.47	147.68	6.08	3.13	183.45	328.67	188.09	61.77	179.01	201.89	134.75	78.28	114.00	113.20
56	E4_Da	KnownBoundary	1	6.52	15.66	221.04	157.22	25.55	13.00	29.54	114.88	46.35	294.19	141.61	0.00	20.29	100.89	265.78	193.97	35.06	199.89	224.38	153.08	71.85	71.03	134.11
57	E4a_E4b	KnownJunction	0	0.00	0.00	4.52	2.06	0.00	0.00	4.37	8.34	7.41	13.43	13.90	0.00	0.00	8.83	17.80	3.33	3.93	17.29	0.00	6.01	0.00	16.78	4.35
58	ER4b	ExonRegion	0	26.29	48.78	207.33	159.80	34.17	103.07	56.16	107.42	44.68	268.33	131.10	12.54	12.71	113.19	184.72	99.33	83.89	157.21	92.06	110.90	106.59	60.92	71.24
59	E4_Ab	KnownBoundary	0	77.42	53.54	182.78	122.06	3.14	64.85	22.17	112.30	36.05	268.14	93.55	5.85	6.82	120.43	133.88	82.46	86.02	128.80	82.92	90.12	134.30	45.74	53.95
60	ER4c	ExonRegion	0	61.70	47.18	219.25	149.22	20.03	50.28	45.37	124.04	35.85	274.30	132.35	12.81	6.23	160.49	202.99	116.99	93.90	128.85	90.72	93.69	116.26	69.82	79.73
61	E4_Db	KnownBoundary	0	47.49	14.73	133.41	89.47	11.54	27.14	33.70	62.31	21.35	181.43	68.60	6.30	6.82	55.51	95.06	41.70	39.36	87.47	57.88	37.14	59.62	37.11	65.22
62	E4_Dc	KnownBoundary	0	39.86	35.06	78.97	71.32	19.27	50.43	50.04	83.09	21.38	137.45	92.29	5.85	6.66	66.98	66.88	102.96	65.54	124.44	73.04	51.01	85.93	40.66	74.27
63	ER4d	ExonRegion	0	70.15	35.73	187.13	131.23	23.70	78.07	60.33	128.15	37.76	291.64	145.24	9.28	14.07	165.66	195.63	107.85	103.27	170.52	112.40	84.19	146.07	71.14	110.33
64	ER4e	ExonRegion	0	56.41	40.77	149.85	100.88	19.76	58.88	35.96	109.78	29.90	247.06	126.92	18.85	11.36	174.34	186.46	110.08	97.38	131.69	80.81	70.72	109.80	72.46	80.53
65	E4_Ac	KnownBoundary	0	75.87	67.42	230.65	140.44	11.29	66.61	60.46	124.45	19.27	280.57	131.98	6.30	12.99	190.54	287.90	95.02	47.41	136.38	66.83	99.77	137.83	68.64	98.94
66	ER4f	ExonRegion	0	58.69	46.60	233.48	117.09	20.18	58.22	53.45	127.91	28.38	276.24	148.75	22.91	14.66	211.78	211.19	103.59	76.88	117.52	79.83	94.99	106.93	49.53	73.97
67	E4_Dd	KnownBoundary	0	106.09	36.18	227.61	89.47	43.72	94.43	67.79	133.12	40.68	264.21	168.31	29.26	12.66	181.00	247.98	125.10	108.37	103.14	117.37	108.15	107.74	45.62	100.22
68	E4d_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E4d_E4e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.11	0.00	0.00	0.00	0.00	0.00	0.00
70	ER4g	ExonRegion	0	42.95	36.81	178.80	86.28	26.02	68.96	41.96	103.20	41.93	251.55	137.04	22.62	4.69	179.10	177.53	106.95	109.16	120.90	65.79	91.42	87.39	62.61	68.10
71	E4_De	KnownBoundary	0	47.49	54.86	145.23	86.44	19.86	69.96	51.41	70.40	33.74	194.59	112.87	6.30	6.33	130.32	175.91	114.76	92.19	151.93	69.18	60.98	110.40	69.07	28.08
72	ER4h	ExonRegion	0	32.04	45.08	182.00	99.34	11.07	76.51	38.03	105.96	37.05	217.34	115.11	19.60	9.25	148.52	168.68	114.67	68.13	147.10	62.56	70.86	93.54	64.13	41.19
73	E4_Df	KnownBoundary	1	31.41	40.45	192.54	90.63	15.20	85.80	37.76	120.96	31.45	192.84	107.97	23.86	13.47	175.29	190.62	130.48	53.39	145.54	63.44	95.88	57.39	57.13	57.45
74	ER4i	ExonRegion	0	38.20	43.54	173.27	83.83	24.96	72.13	36.04	77.09	35.49	220.29	111.46	9.21	12.26	162.42	182.58	104.97	75.18	119.20	60.77	89.41	93.65	61.29	51.26
75	E4_Dg	KnownBoundary	1	64.31	34.07	171.46	93.69	20.29	38.44	34.98	100.43	53.85	234.48	110.19	5.70	0.00	77.46	44.38	43.15	103.60	145.00	31.72	88.91	127.69	47.82	31.76
76	ER4j	ExonRegion	0	27.39	31.89	140.56	68.64	6.40	32.10	32.81	105.51	37.00	231.01	126.56	2.07	2.85	125.95	209.69	82.87	85.63	95.71	49.35	88.28	116.73	66.52	37.45
77	E4_Ad	KnownBoundary	0	20.67	45.32	114.60	77.61	16.30	51.16	47.70	100.71	26.91	251.40	120.45	12.00	13.80	109.48	262.93	112.45	91.16	83.49	38.59	63.92	82.66	71.95	50.45
78	ER4k	ExonRegion	0	36.19	32.49	193.30	113.09	30.44	56.02	31.84	106.39	31.77	272.93	134.43	3.36	2.58	116.73	252.77	94.96	100.59	92.11	53.20	95.37	83.91	66.41	55.06
79	E4_Ae	KnownBoundary	0	95.87	41.97	272.67	206.63	64.43	102.33	46.02	132.14	43.17	305.31	165.25	5.70	6.33	131.56	269.24	108.09	146.98	178.08	88.10	163.18	115.46	78.01	84.42
80	ER4l	ExonRegion	0	46.28	23.58	198.24	135.41	38.32	48.89	24.44	141.15	36.91	259.67	149.29	10.71	33.47	137.36	215.09	99.94	107.87	112.37	71.37	114.79	117.81	70.70	65.05
81	E4_Dh	KnownBoundary	0	7.11	12.89	77.47	62.76	0.00	15.79	17.22	64.03	26.36	111.18	61.70	0.00	13.64	36.08	53.90	55.71	51.52	48.09	18.73	44.29	28.17	11.45	26.72
82	ER4m	ExonRegion	0	14.22	16.58	103.49	62.39	5.35	16.46	18.46	82.95	22.48	173.01	76.41	2.44	5.35	59.35	131.34	45.46	67.73	55.06	19.22	52.22	54.76	34.12	19.24
83	E4_Di	KnownBoundary	1	17.04	40.85	87.37	51.58	4.33	13.23	18.24	50.11	14.58	112.82	64.17	5.85	0.00	33.96	124.73	65.11	64.70	36.77	21.37	48.39	37.62	22.41	29.71
84	ER4n	ExonRegion	0	8.61	11.57	34.97	20.40	2.83	13.05	6.00	20.51	6.48	43.36	21.92	1.09	0.00	28.07	54.29	15.71	15.08	12.25	10.65	22.01	12.29	16.64	10.84
85	ER4o	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00