Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC091196.1 Gene 0 47.30 36.32 94.83 92.07 21.46 78.21 18.97 104.68 38.16 156.63 124.87 14.49 17.37 81.57 108.00 65.25 55.13 53.86 44.27 36.24 71.28 62.11 54.48 2 399693 Transcript 0 2.45 0.00 0.02 0.00 0.00 0.82 1.50 0.09 0.00 0.40 0.05 0.00 0.00 0.03 0.00 0.00 0.75 0.64 0.01 0.46 0.51 0.00 0.68 3 329957 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 4 427202 Transcript 0 0.00 0.00 0.11 0.12 2.19 0.17 0.24 1.57 0.00 0.31 0.35 0.00 0.00 0.15 0.00 0.00 0.30 0.34 0.29 0.19 0.60 0.00 0.00 5 ER1a ExonRegion 0 4.91 0.00 0.03 0.00 0.00 1.63 0.96 0.19 0.00 0.80 0.11 0.00 0.00 0.06 0.00 0.00 1.50 1.28 0.03 0.93 1.02 0.00 1.36 6 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 8 ER3a ExonRegion 0 0.00 0.00 0.11 0.12 2.19 0.17 0.24 1.57 0.00 0.31 0.35 0.00 0.00 0.15 0.00 0.00 0.30 0.34 0.29 0.19 0.60 0.00 0.00 9 ER3b ExonRegion 0 19.37 15.02 54.37 61.96 9.93 23.56 7.62 61.92 19.29 104.79 99.58 9.69 9.47 47.56 90.08 61.34 56.82 18.17 45.75 32.27 63.67 54.20 50.86 10 E3_Da NovelBoundary 0 8.96 0.00 3.87 3.86 0.00 0.00 0.00 22.10 0.00 16.68 4.84 0.00 0.00 2.35 13.60 12.30 3.93 30.39 0.00 0.00 6.24 5.39 15.79 11 E3a_E4a KnownJunction 1 25.78 34.14 110.43 144.90 7.30 44.69 5.92 66.83 32.23 151.85 72.49 12.30 13.64 71.05 360.34 297.02 48.34 43.28 163.96 31.00 47.26 216.22 269.92 12 E4_Aa NovelBoundary 0 81.64 5.59 30.48 16.38 7.39 10.33 10.25 48.96 7.44 62.56 21.27 5.55 0.00 40.08 19.53 11.54 4.77 13.85 13.74 14.51 31.69 17.15 19.12 13 ER4a ExonRegion 0 40.01 37.21 140.29 119.15 33.87 86.13 19.51 127.74 41.63 185.96 172.44 40.95 30.83 102.75 164.14 118.95 58.33 68.25 75.13 40.20 107.75 101.47 126.31 14 E4a_E5a KnownJunction 0 35.34 55.19 152.12 190.59 101.10 265.02 44.47 168.61 39.18 249.87 194.68 64.22 60.87 111.78 123.25 54.60 54.60 84.81 59.77 53.37 104.03 87.20 87.84 15 I4_AR1 ActiveIntronRegion 0 14.19 5.47 5.56 6.68 4.01 9.57 5.23 6.34 2.82 16.25 6.86 2.76 1.55 6.30 5.56 4.26 4.68 13.55 13.56 9.92 9.51 7.62 13.11 16 I4_AR13 ActiveIntronRegion 0 4.35 6.69 8.32 5.71 5.54 6.78 4.96 12.76 10.29 12.92 5.96 4.54 5.86 5.30 6.48 5.82 1.40 17.65 6.01 7.84 10.59 4.54 10.93 17 I4_AR14 ActiveIntronRegion 0 7.04 5.56 6.60 11.83 3.02 7.95 4.68 17.29 9.02 21.55 7.48 0.59 2.37 4.73 2.54 3.63 6.72 17.83 9.34 6.43 12.32 9.44 11.05 18 I4_SR4 SilentIntronRegion 0 4.63 6.09 10.10 7.73 4.53 7.61 5.03 13.01 6.91 18.53 8.13 0.82 0.47 6.09 5.12 3.73 4.65 16.59 9.58 5.28 10.84 6.27 10.34 19 I4_SR5 SilentIntronRegion 0 12.26 7.67 13.70 10.43 6.55 18.07 5.60 22.76 7.95 21.03 8.63 0.76 0.87 6.25 8.31 5.31 4.46 18.39 9.04 8.35 14.49 14.21 7.00 20 E5_Aa NovelBoundary 0 6.59 6.12 23.54 22.44 7.30 28.11 2.25 34.17 16.64 34.52 14.21 0.00 0.00 7.71 8.90 4.19 4.02 26.32 12.24 18.22 11.18 8.27 12.29 21 ER5a ExonRegion 0 99.04 82.53 210.18 223.23 57.58 194.93 39.39 202.23 74.41 277.06 250.23 35.40 35.91 144.00 180.09 115.29 88.97 115.46 67.35 74.98 128.75 135.11 106.87 22 E5a_E6a KnownJunction 0 110.76 87.02 192.72 181.03 22.58 84.78 26.14 211.41 61.11 273.62 226.48 41.71 19.32 164.64 236.23 159.27 78.92 107.94 62.59 74.53 130.66 116.59 112.42 23 I5 Intron 0 0.67 0.77 4.28 1.29 1.35 0.12 1.17 9.29 10.71 16.44 1.35 0.00 0.00 0.58 1.66 1.69 3.34 16.04 2.82 2.69 0.14 0.13 1.30 24 I5_SR1 SilentIntronRegion 0 0.68 0.78 4.31 1.30 1.37 0.12 1.19 9.38 10.84 16.60 1.35 0.00 0.00 0.59 1.68 1.71 3.38 16.17 2.85 2.72 0.13 0.13 1.32 25 ER6a ExonRegion 0 95.24 71.18 190.42 168.45 18.73 67.12 18.54 196.01 55.33 250.71 240.84 36.37 30.95 169.23 203.67 150.39 70.64 117.52 66.26 63.83 111.51 107.09 106.31 26 E6_Da KnownBoundary 0 205.89 62.82 159.25 164.11 12.14 100.11 19.56 237.90 91.93 301.07 283.18 43.51 53.89 173.94 267.76 150.99 136.04 129.50 89.98 76.83 134.24 133.12 72.13 27 ER6b ExonRegion 0 125.83 67.17 163.76 165.39 9.75 78.62 20.12 201.11 63.91 278.29 285.26 43.02 34.04 168.70 216.10 147.36 104.46 118.73 82.41 72.20 123.48 129.78 84.31 28 ER6c ExonRegion 0 49.17 37.64 92.78 87.70 20.87 82.06 20.61 107.82 40.59 163.96 120.04 11.10 16.80 85.10 107.32 60.38 56.01 55.31 42.91 35.20 69.56 56.58 47.74 29 IG50 Intergenic 0 3.33 5.93 13.35 10.42 4.72 16.32 3.99 25.96 13.08 29.69 0.21 0.11 0.04 0.19 1.20 0.27 0.39 20.32 11.22 10.58 0.24 0.19 0.76 30 IG50_SR2 SilentIntergenicRegion 0 2.59 1.69 3.61 1.96 1.67 1.44 1.84 7.24 7.59 16.49 0.27 0.13 0.00 0.14 1.26 0.24 0.42 11.92 6.29 4.32 0.15 0.02 0.75 31 IG50_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 1.25 5.35 0.00 0.00 1.73 7.93 3.25 0.00 0.00 0.00 0.00 2.90 0.00 3.30 15.86 3.19 4.26 0.00 0.00 0.00 32 IG50_AR1 ActiveIntergenicRegion 0 7.76 29.56 66.93 57.16 21.70 99.03 16.46 129.62 44.70 103.91 0.00 0.00 0.23 0.40 0.81 0.36 0.20 66.41 39.18 45.37 0.79 1.13 1.06